Wall clock time and date at job start Tue Mar 31 2020 23:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39648 * 120.17927 * 274.40537 * 3 2 1 5 5 C 1.37845 * 119.80606 * 179.97438 * 4 3 2 6 6 C 1.38620 * 120.30394 * 0.02562 * 5 4 3 7 7 C 1.38230 * 120.17593 * 0.02562 * 6 5 4 8 8 C 1.38171 * 120.08753 * 359.97438 * 7 6 5 9 9 C 1.50809 * 108.84804 * 179.76390 * 7 6 5 10 10 N 1.46615 * 107.70840 * 0.38575 * 9 7 6 11 11 C 1.34780 * 126.54704 * 179.88125 * 10 9 7 12 12 O 1.21586 * 119.99429 * 359.71976 * 11 10 9 13 13 N 1.34773 * 120.00353 * 179.71595 * 11 10 9 14 14 C 1.46500 * 120.00046 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47057 * 34.99999 * 14 13 11 16 16 C 1.50697 * 109.47337 * 154.99896 * 14 13 11 17 17 H 1.08000 * 120.00299 * 116.84240 * 16 14 13 18 18 C 1.37881 * 119.99869 * 296.84498 * 16 14 13 19 19 N 1.31512 * 119.99931 * 173.83457 * 18 16 14 20 20 Si 1.86802 * 120.00168 * 353.84120 * 18 16 14 21 21 H 1.48500 * 109.47363 * 85.12979 * 20 18 16 22 22 H 1.48496 * 109.46931 * 205.13523 * 20 18 16 23 23 H 1.48502 * 109.46868 * 325.13170 * 20 18 16 24 24 C 1.52996 * 109.46990 * 275.00193 * 14 13 11 25 25 F 1.39893 * 109.47552 * 65.08029 * 24 14 13 26 26 F 1.39906 * 109.46847 * 185.07943 * 24 14 13 27 27 F 1.39898 * 109.46991 * 305.07597 * 24 14 13 28 28 C 1.46611 * 106.91323 * 359.62679 * 10 9 7 29 29 H 1.07995 * 120.09892 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.84294 * 180.02562 * 5 4 3 31 31 H 1.08001 * 120.00546 * 180.02562 * 8 7 6 32 32 H 1.09002 * 109.92398 * 240.77698 * 9 7 6 33 33 H 1.08992 * 109.69511 * 119.87296 * 9 7 6 34 34 H 0.96993 * 120.00235 * 359.97438 * 13 11 10 35 35 H 0.97003 * 120.00411 * 179.97438 * 19 18 16 36 36 H 1.08998 * 109.81566 * 119.78927 * 28 10 9 37 37 H 1.09007 * 109.81012 * 240.68601 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2701 -0.0918 1.2036 5 6 4.6485 -0.0910 1.1946 6 6 5.3401 0.0016 -0.0031 7 6 4.6511 0.0944 -1.1979 8 6 3.2694 0.0947 -1.2025 9 6 5.6456 0.1875 -2.3278 10 7 6.9897 0.1360 -1.7443 11 6 8.1580 0.1879 -2.4143 12 8 8.1599 0.2823 -3.6265 13 7 9.3241 0.1353 -1.7406 14 6 10.5940 0.1923 -2.4689 15 1 10.4892 0.8510 -3.3310 16 6 11.6715 0.7235 -1.5590 17 1 12.5150 0.1009 -1.3000 18 6 11.5804 2.0046 -1.0573 19 7 12.4539 2.4267 -0.1694 20 14 10.2161 3.1406 -1.6385 21 1 8.9914 2.8946 -0.8356 22 1 10.6429 4.5529 -1.4705 23 1 9.9296 2.8771 -3.0716 24 6 10.9734 -1.2120 -2.9431 25 9 10.0327 -1.6589 -3.8771 26 9 12.2398 -1.1774 -3.5366 27 9 10.9948 -2.0836 -1.8490 28 6 6.8203 0.0235 -0.2924 29 1 2.7347 -0.1645 2.1387 30 1 5.1920 -0.1629 2.1251 31 1 2.7325 0.1668 -2.1368 32 1 5.5115 1.1269 -2.8642 33 1 5.5065 -0.6513 -3.0097 34 1 9.3226 0.0605 -0.7736 35 1 12.3901 3.3280 0.1834 36 1 7.2797 -0.8989 0.0628 37 1 7.2803 0.8800 0.2007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932896543.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:15 Heat of formation + Delta-G solvation = -111.945315 kcal Electronic energy + Delta-G solvation = -29137.592039 eV Core-core repulsion = 24465.447025 eV Total energy + Delta-G solvation = -4672.145014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.094 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.10854 -46.61466 -46.59910 -40.97851 -39.26958 -37.30422 -35.93301 -34.90919 -32.64648 -32.08507 -31.51760 -29.09563 -28.09617 -25.69731 -25.05493 -22.80612 -22.19448 -21.41218 -19.95211 -18.73502 -18.52339 -17.63208 -17.53815 -16.91726 -16.50619 -16.42203 -16.11034 -15.50690 -15.18468 -14.65773 -14.46072 -14.38731 -13.92158 -13.74228 -13.56027 -13.48367 -13.27376 -13.10935 -13.06305 -13.04937 -13.01778 -12.84618 -12.79443 -12.72436 -12.68776 -12.25779 -11.89774 -11.78957 -11.33458 -11.22889 -10.72095 -10.24983 -10.01337 -9.83067 -9.40001 -9.32692 -9.05356 -8.65466 -8.26503 -6.57950 -4.71279 0.31176 0.85203 2.28185 2.51708 2.65154 3.04602 3.15552 3.26865 3.41573 3.42299 3.45624 3.84987 3.93523 4.05786 4.13664 4.30003 4.44892 4.77933 4.90192 4.96356 4.97961 5.05511 5.17702 5.30035 5.31761 5.41370 5.44337 5.49980 5.58186 5.70468 5.79597 5.95880 6.19172 6.29680 6.38835 6.82632 7.02515 7.10770 7.29004 7.83310 8.38063 8.46222 8.93282 8.97104 10.50037 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.003358 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.942940 B = 8336.079375 C = 9121.678112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.259 3.741 3 C -0.029 4.029 4 C -0.066 4.066 5 C -0.095 4.095 6 C -0.066 4.066 7 C -0.102 4.102 8 C -0.046 4.046 9 C 0.170 3.830 10 N -0.639 5.639 11 C 0.718 3.282 12 O -0.578 6.578 13 N -0.726 5.726 14 C 0.219 3.781 15 H 0.092 0.908 16 C -0.536 4.536 17 H 0.097 0.903 18 C 0.098 3.902 19 N -0.860 5.860 20 Si 0.879 3.121 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.257 1.257 24 C 0.441 3.559 25 F -0.192 7.192 26 F -0.184 7.184 27 F -0.190 7.190 28 C 0.135 3.865 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.398 0.602 35 H 0.275 0.725 36 H 0.090 0.910 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.570 -3.917 3.516 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.056 4.056 3 C -0.033 4.033 4 C -0.086 4.086 5 C -0.113 4.113 6 C -0.067 4.067 7 C -0.102 4.102 8 C -0.067 4.067 9 C 0.046 3.954 10 N -0.380 5.380 11 C 0.421 3.579 12 O -0.454 6.454 13 N -0.383 5.383 14 C 0.115 3.885 15 H 0.110 0.890 16 C -0.574 4.574 17 H 0.114 0.886 18 C -0.112 4.112 19 N -0.493 5.493 20 Si 0.705 3.295 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.181 1.181 24 C 0.385 3.615 25 F -0.174 7.174 26 F -0.165 7.165 27 F -0.172 7.172 28 C 0.012 3.988 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.234 0.766 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.100 -3.719 2.644 15.774 hybrid contribution -0.213 0.378 0.320 0.539 sum -15.312 -3.341 2.964 15.951 Atomic orbital electron populations 1.81276 1.12014 1.08910 1.07159 1.25602 0.92510 0.93675 0.93861 1.15758 0.84291 1.08487 0.94732 1.21070 0.93720 0.97036 0.96793 1.20442 0.93167 1.00420 0.97320 1.20626 0.95501 0.96799 0.93810 1.20277 0.93329 1.00782 0.95842 1.20382 0.92027 0.97022 0.97237 1.19954 0.79087 1.03236 0.93120 1.47073 1.04750 1.79833 1.06307 1.15736 0.79163 0.77878 0.85100 1.90925 1.85620 1.57620 1.11274 1.46920 1.03703 1.76836 1.10797 1.20182 0.83463 0.87659 0.97162 0.89019 1.20828 1.05823 1.00458 1.30250 0.88551 1.24911 0.95798 0.97396 0.93106 1.69874 1.35000 1.18729 1.25648 0.86777 0.81712 0.79786 0.81177 1.19747 1.21215 1.18138 1.21507 0.74191 0.91087 0.74677 1.93151 1.65552 1.91374 1.67303 1.93111 1.42012 1.96899 1.84526 1.93078 1.96280 1.72975 1.54869 1.20389 0.92115 1.03281 0.83008 0.84378 0.84244 0.84547 0.89867 0.89703 0.76577 0.91465 0.89245 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.89 18.54 41.84 0.78 -4.12 16 2 C 0.26 2.41 15.33 -22.47 -0.34 2.07 16 3 C -0.03 -0.23 5.73 -106.96 -0.61 -0.84 16 4 C -0.07 -0.42 9.76 -39.20 -0.38 -0.81 16 5 C -0.10 -0.66 10.03 -39.58 -0.40 -1.05 16 6 C -0.07 -0.61 6.22 -104.42 -0.65 -1.26 16 7 C -0.10 -0.97 6.21 -104.60 -0.65 -1.62 16 8 C -0.05 -0.36 9.75 -39.12 -0.38 -0.74 16 9 C 0.17 2.04 6.90 -5.08 -0.04 2.00 16 10 N -0.64 -9.53 3.34 -181.86 -0.61 -10.13 16 11 C 0.72 13.80 7.91 -86.92 -0.69 13.12 16 12 O -0.58 -12.92 15.28 5.29 0.08 -12.84 16 13 N -0.73 -14.25 3.17 -59.82 -0.19 -14.44 16 14 C 0.22 4.86 1.41 -69.09 -0.10 4.76 16 15 H 0.09 2.18 6.29 -51.93 -0.33 1.86 16 16 C -0.54 -13.16 8.64 -34.44 -0.30 -13.46 16 17 H 0.10 2.59 7.92 -52.49 -0.42 2.17 16 18 C 0.10 2.43 5.46 -17.82 -0.10 2.34 16 19 N -0.86 -22.68 13.96 55.43 0.77 -21.91 16 20 Si 0.88 19.54 26.14 -169.99 -4.44 15.10 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.26 -5.98 6.56 56.52 0.37 -5.61 16 24 C 0.44 9.44 2.79 37.16 0.10 9.55 16 25 F -0.19 -4.13 15.83 2.25 0.04 -4.09 16 26 F -0.18 -3.98 16.84 2.25 0.04 -3.95 16 27 F -0.19 -3.94 16.97 2.25 0.04 -3.90 16 28 C 0.14 1.53 6.21 -5.07 -0.03 1.50 16 29 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 30 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 31 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 7.09 7.64 -40.82 -0.31 6.78 16 35 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -30.07 340.09 -6.11 -36.18 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.18 Total: 3.41 kcal Atomic # 6 Polarization: 20.11 SS G_CDS: -4.56 Total: 15.55 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.75 Total: -50.60 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 9 Polarization: -12.05 SS G_CDS: 0.11 Total: -11.94 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.44 Total: 15.10 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.07 -6.11 -36.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896543.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.762 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds