Wall clock time and date at job start Tue Mar 31 2020 23:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39648 * 120.17927 * 274.40537 * 3 2 1 5 5 C 1.37845 * 119.80606 * 179.97438 * 4 3 2 6 6 C 1.38620 * 120.30394 * 0.02562 * 5 4 3 7 7 C 1.38230 * 120.17593 * 0.02562 * 6 5 4 8 8 C 1.38171 * 120.08753 * 359.97438 * 7 6 5 9 9 C 1.50809 * 108.84804 * 179.76390 * 7 6 5 10 10 N 1.46615 * 107.70840 * 0.38575 * 9 7 6 11 11 C 1.34780 * 126.54704 * 179.88125 * 10 9 7 12 12 O 1.21586 * 119.99429 * 359.71976 * 11 10 9 13 13 N 1.34773 * 120.00353 * 179.71595 * 11 10 9 14 14 C 1.46500 * 120.00046 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47057 * 34.99999 * 14 13 11 16 16 C 1.50697 * 109.47337 * 154.99896 * 14 13 11 17 17 H 1.08000 * 120.00299 * 116.84240 * 16 14 13 18 18 C 1.37881 * 119.99869 * 296.84498 * 16 14 13 19 19 N 1.31512 * 119.99931 * 173.83457 * 18 16 14 20 20 Si 1.86802 * 120.00168 * 353.84120 * 18 16 14 21 21 H 1.48500 * 109.47363 * 85.12979 * 20 18 16 22 22 H 1.48496 * 109.46931 * 205.13523 * 20 18 16 23 23 H 1.48502 * 109.46868 * 325.13170 * 20 18 16 24 24 C 1.52996 * 109.46990 * 275.00193 * 14 13 11 25 25 F 1.39893 * 109.47552 * 65.08029 * 24 14 13 26 26 F 1.39906 * 109.46847 * 185.07943 * 24 14 13 27 27 F 1.39898 * 109.46991 * 305.07597 * 24 14 13 28 28 C 1.46611 * 106.91323 * 359.62679 * 10 9 7 29 29 H 1.07995 * 120.09892 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.84294 * 180.02562 * 5 4 3 31 31 H 1.08001 * 120.00546 * 180.02562 * 8 7 6 32 32 H 1.09002 * 109.92398 * 240.77698 * 9 7 6 33 33 H 1.08992 * 109.69511 * 119.87296 * 9 7 6 34 34 H 0.96993 * 120.00235 * 359.97438 * 13 11 10 35 35 H 0.97003 * 120.00411 * 179.97438 * 19 18 16 36 36 H 1.08998 * 109.81566 * 119.78927 * 28 10 9 37 37 H 1.09007 * 109.81012 * 240.68601 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2701 -0.0918 1.2036 5 6 4.6485 -0.0910 1.1946 6 6 5.3401 0.0016 -0.0031 7 6 4.6511 0.0944 -1.1979 8 6 3.2694 0.0947 -1.2025 9 6 5.6456 0.1875 -2.3278 10 7 6.9897 0.1360 -1.7443 11 6 8.1580 0.1879 -2.4143 12 8 8.1599 0.2823 -3.6265 13 7 9.3241 0.1353 -1.7406 14 6 10.5940 0.1923 -2.4689 15 1 10.4892 0.8510 -3.3310 16 6 11.6715 0.7235 -1.5590 17 1 12.5150 0.1009 -1.3000 18 6 11.5804 2.0046 -1.0573 19 7 12.4539 2.4267 -0.1694 20 14 10.2161 3.1406 -1.6385 21 1 8.9914 2.8946 -0.8356 22 1 10.6429 4.5529 -1.4705 23 1 9.9296 2.8771 -3.0716 24 6 10.9734 -1.2120 -2.9431 25 9 10.0327 -1.6589 -3.8771 26 9 12.2398 -1.1774 -3.5366 27 9 10.9948 -2.0836 -1.8490 28 6 6.8203 0.0235 -0.2924 29 1 2.7347 -0.1645 2.1387 30 1 5.1920 -0.1629 2.1251 31 1 2.7325 0.1668 -2.1368 32 1 5.5115 1.1269 -2.8642 33 1 5.5065 -0.6513 -3.0097 34 1 9.3226 0.0605 -0.7736 35 1 12.3901 3.3280 0.1834 36 1 7.2797 -0.8989 0.0628 37 1 7.2803 0.8800 0.2007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932896543.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:15 Heat of formation + Delta-G solvation = -129.221620 kcal Electronic energy + Delta-G solvation = -29138.341196 eV Core-core repulsion = 24465.447025 eV Total energy + Delta-G solvation = -4672.894171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.85747 -48.36509 -48.33934 -41.91709 -40.48760 -38.22937 -36.94833 -36.53483 -34.44983 -32.77920 -32.58914 -30.60741 -28.96266 -26.93778 -26.69648 -23.55645 -23.28949 -22.73042 -21.36250 -20.21320 -19.45197 -19.30978 -19.06163 -18.56216 -18.33140 -17.48604 -17.19983 -16.65167 -16.28480 -15.93673 -15.39612 -15.33803 -15.27046 -15.22614 -14.90102 -14.81989 -14.78525 -14.68294 -14.56371 -14.54053 -14.46872 -14.00947 -13.99641 -13.81741 -13.71223 -13.57454 -13.02365 -12.96348 -12.63710 -12.51055 -12.07656 -11.95280 -11.87176 -11.50641 -10.97153 -10.41406 -10.08893 -9.92627 -9.33352 -8.51964 -6.69253 -0.33117 0.26981 1.21061 1.35213 1.37521 1.47693 1.58642 1.83133 1.87005 2.15802 2.24030 2.66766 2.71573 2.78175 3.03959 3.20582 3.32727 3.35348 3.40977 3.65377 3.89317 4.13469 4.35928 4.42733 4.43171 4.49514 4.55016 4.57987 4.71696 4.93416 4.95264 5.05375 5.11574 5.25479 5.37613 5.47023 5.71618 5.84328 6.02136 6.40664 6.45162 6.90227 7.01281 7.44854 8.60115 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.003358 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.942940 B = 8336.079375 C = 9121.678112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.284 3.716 3 C -0.033 4.033 4 C -0.051 4.051 5 C -0.087 4.087 6 C -0.070 4.070 7 C -0.111 4.111 8 C -0.039 4.039 9 C 0.166 3.834 10 N -0.639 5.639 11 C 0.717 3.283 12 O -0.614 6.614 13 N -0.724 5.724 14 C 0.229 3.771 15 H 0.077 0.923 16 C -0.538 4.538 17 H 0.068 0.932 18 C 0.068 3.932 19 N -0.897 5.897 20 Si 0.928 3.072 21 H -0.249 1.249 22 H -0.284 1.284 23 H -0.274 1.274 24 C 0.444 3.556 25 F -0.191 7.191 26 F -0.186 7.186 27 F -0.185 7.185 28 C 0.128 3.872 29 H 0.165 0.835 30 H 0.167 0.833 31 H 0.149 0.851 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.408 0.592 35 H 0.280 0.720 36 H 0.103 0.897 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.604 -4.017 5.018 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.031 4.031 3 C -0.036 4.036 4 C -0.071 4.071 5 C -0.105 4.105 6 C -0.071 4.071 7 C -0.112 4.112 8 C -0.060 4.060 9 C 0.043 3.957 10 N -0.378 5.378 11 C 0.420 3.580 12 O -0.494 6.494 13 N -0.381 5.381 14 C 0.124 3.876 15 H 0.094 0.906 16 C -0.576 4.576 17 H 0.086 0.914 18 C -0.138 4.138 19 N -0.532 5.532 20 Si 0.753 3.247 21 H -0.173 1.173 22 H -0.210 1.210 23 H -0.200 1.200 24 C 0.388 3.612 25 F -0.172 7.172 26 F -0.168 7.168 27 F -0.166 7.166 28 C 0.006 3.994 29 H 0.183 0.817 30 H 0.185 0.815 31 H 0.167 0.833 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.246 0.754 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.183 -3.832 4.198 18.099 hybrid contribution 0.400 0.335 -0.142 0.541 sum -16.783 -3.497 4.055 17.617 Atomic orbital electron populations 1.81312 1.13352 1.10624 1.08589 1.25716 0.92528 0.92320 0.92530 1.15788 0.83361 1.09173 0.95298 1.21385 0.93577 0.94818 0.97299 1.20694 0.93271 0.99111 0.97385 1.20561 0.94105 0.97791 0.94682 1.19992 0.93482 1.02806 0.94883 1.20442 0.91350 0.96104 0.98065 1.20047 0.78322 1.03116 0.94216 1.46960 1.04418 1.78124 1.08253 1.15656 0.79900 0.77803 0.84680 1.90897 1.86375 1.59182 1.12933 1.46363 1.03275 1.77338 1.11133 1.19771 0.83869 0.87779 0.96196 0.90579 1.20729 1.05936 1.00428 1.30546 0.91434 1.25381 0.97289 0.98255 0.92919 1.69938 1.36689 1.19469 1.27069 0.86022 0.80545 0.78287 0.79894 1.17307 1.21038 1.19950 1.21362 0.74088 0.90915 0.74785 1.93155 1.65483 1.91308 1.67265 1.93105 1.42209 1.96909 1.84582 1.93085 1.96251 1.72710 1.54576 1.20597 0.94089 1.04114 0.80592 0.81703 0.81550 0.83294 0.90280 0.89833 0.75390 0.90994 0.87945 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.11 18.54 19.00 0.35 -9.75 16 2 C 0.28 4.60 15.33 88.33 1.35 5.96 16 3 C -0.03 -0.40 5.73 -21.38 -0.12 -0.52 16 4 C -0.05 -0.43 9.76 22.52 0.22 -0.21 16 5 C -0.09 -0.81 10.03 22.27 0.22 -0.59 16 6 C -0.07 -1.07 6.22 -19.73 -0.12 -1.19 16 7 C -0.11 -1.84 6.21 -19.85 -0.12 -1.96 16 8 C -0.04 -0.51 9.75 22.57 0.22 -0.29 16 9 C 0.17 3.77 6.90 85.65 0.59 4.36 16 10 N -0.64 -18.09 3.34 -847.53 -2.83 -20.92 16 11 C 0.72 26.96 7.91 179.05 1.42 28.37 16 12 O -0.61 -27.39 15.28 -3.99 -0.06 -27.45 16 13 N -0.72 -27.84 3.17 -461.42 -1.46 -29.30 16 14 C 0.23 10.19 1.41 44.24 0.06 10.25 16 15 H 0.08 3.67 6.29 -2.39 -0.02 3.65 16 16 C -0.54 -26.74 8.64 25.60 0.22 -26.52 16 17 H 0.07 3.72 7.92 -2.91 -0.02 3.69 16 18 C 0.07 3.40 5.46 84.66 0.46 3.86 16 19 N -0.90 -47.55 13.96 21.45 0.30 -47.25 16 20 Si 0.93 39.91 26.14 68.60 1.79 41.70 16 21 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.27 -12.57 6.56 99.48 0.65 -11.92 16 24 C 0.44 19.00 2.79 71.98 0.20 19.21 16 25 F -0.19 -8.12 15.83 44.97 0.71 -7.41 16 26 F -0.19 -8.13 16.84 44.97 0.76 -7.37 16 27 F -0.18 -7.54 16.97 44.97 0.76 -6.78 16 28 C 0.13 2.57 6.21 85.66 0.53 3.10 16 29 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 30 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 31 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.41 14.03 7.64 -92.71 -0.71 13.32 16 35 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -65.22 340.09 5.86 -59.36 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.40 Total: 11.36 kcal Atomic # 6 Polarization: 38.69 SS G_CDS: 5.14 Total: 43.82 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -3.64 Total: -107.22 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.06 Total: -27.45 kcal Atomic # 9 Polarization: -23.80 SS G_CDS: 2.23 Total: -21.56 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 1.79 Total: 41.70 kcal Total: -65.22 5.86 -59.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896543.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.864 kcal (2) G-P(sol) polarization free energy of solvation -65.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds