Wall clock time and date at job start Tue Mar 31 2020 22:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45199 * 109.47230 * 2 1 4 4 C 1.34237 * 116.99892 * 179.97438 * 3 2 1 5 5 O 1.20819 * 119.99784 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99522 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.46905 * 186.11572 * 6 4 3 8 8 C 1.46900 * 111.00352 * 291.76415 * 7 6 4 9 9 C 1.50699 * 109.46980 * 288.28532 * 8 7 6 10 10 H 1.08001 * 120.00074 * 354.78625 * 9 8 7 11 11 C 1.37879 * 119.99987 * 174.77901 * 9 8 7 12 12 N 1.31509 * 120.00071 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99702 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47075 * 90.00649 * 13 11 9 15 15 H 1.48506 * 109.46694 * 210.00446 * 13 11 9 16 16 H 1.48499 * 109.47502 * 329.99916 * 13 11 9 17 17 C 1.38381 * 110.99821 * 55.71649 * 7 6 4 18 18 N 1.32903 * 120.76529 * 236.04551 * 17 7 6 19 19 C 1.32153 * 121.18272 * 179.97438 * 18 17 7 20 20 Cl 1.73603 * 118.79061 * 180.02562 * 19 18 17 21 21 N 1.31776 * 122.42563 * 359.97438 * 19 18 17 22 22 C 1.32896 * 120.62734 * 0.02562 * 21 19 18 23 23 N 1.37197 * 134.90210 * 179.97438 * 22 21 19 24 24 H 0.97008 * 126.27619 * 0.03700 * 23 22 21 25 25 C 1.36340 * 107.44589 * 180.02562 * 23 22 21 26 26 N 1.30130 * 109.97474 * 0.02562 * 25 23 22 27 27 C 1.35497 * 109.43682 * 359.97438 * 26 25 23 28 28 H 1.09000 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47001 * 299.99590 * 1 2 3 30 30 H 1.08993 * 109.46941 * 59.99653 * 1 2 3 31 31 H 1.09000 * 109.47336 * 239.99727 * 2 1 3 32 32 H 1.09002 * 109.47454 * 120.00051 * 2 1 3 33 33 H 1.09000 * 109.47075 * 66.12460 * 6 4 3 34 34 H 1.08994 * 109.47769 * 306.11968 * 6 4 3 35 35 H 1.09001 * 109.46736 * 48.28665 * 8 7 6 36 36 H 1.09004 * 109.46962 * 168.28702 * 8 7 6 37 37 H 0.96998 * 119.99944 * 180.02562 * 12 11 9 38 38 H 1.08003 * 125.01258 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 7 5.3805 2.8634 -0.1468 8 6 6.0010 2.2783 1.0493 9 6 5.9277 3.2644 2.1865 10 1 5.5433 4.2590 2.0150 11 6 6.3514 2.8968 3.4461 12 7 6.8199 1.6859 3.6549 13 14 6.2598 4.1189 4.8559 14 1 4.9442 3.9954 5.5333 15 1 7.3459 3.8352 5.8281 16 1 6.4168 5.4976 4.3269 17 6 5.7294 2.1551 -1.2833 18 7 6.5279 1.0955 -1.2056 19 6 6.8659 0.4128 -2.2854 20 17 7.9122 -0.9616 -2.1121 21 7 6.4372 0.7362 -3.4888 22 6 5.6345 1.7808 -3.6635 23 7 5.0301 2.3673 -4.7465 24 1 5.1002 2.0776 -5.6697 25 6 4.3124 3.4317 -4.2874 26 7 4.4414 3.5312 -2.9964 27 6 5.2473 2.5394 -2.5460 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.6748 3.4326 0.9393 34 1 3.5003 3.5042 -0.8306 35 1 5.4711 1.3664 1.3243 36 1 7.0444 2.0430 0.8391 37 1 7.1175 1.4272 4.5411 38 1 3.7237 4.0946 -4.9043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157150599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:42 Heat of formation + Delta-G solvation = 10.956645 kcal Electronic energy + Delta-G solvation = -27914.194485 eV Core-core repulsion = 23819.095541 eV Total energy + Delta-G solvation = -4095.098943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.76292 -41.92266 -40.53937 -38.96910 -37.83840 -37.24623 -35.06331 -34.22603 -33.39501 -32.73555 -31.01927 -29.97057 -28.23615 -25.47332 -25.20319 -24.27456 -23.32481 -22.67348 -21.99961 -20.40862 -19.23596 -18.96557 -18.52080 -18.09232 -17.70715 -17.31010 -17.21016 -16.85376 -16.30170 -16.13243 -15.54814 -15.33557 -15.24805 -15.00839 -14.63658 -14.16423 -13.67823 -13.52347 -13.29959 -13.03035 -12.91682 -12.80186 -12.61804 -12.57776 -12.56929 -12.51957 -12.41744 -12.11447 -11.95184 -11.62314 -11.59486 -11.37819 -10.83090 -10.60452 -10.33436 -10.28410 -9.18263 -8.17457 -6.31464 -0.62886 -0.01158 0.16530 1.06601 1.44107 1.46551 1.54133 1.58064 1.59201 1.67007 2.23279 2.44184 2.61099 3.01088 3.15186 3.21483 3.32770 3.69971 3.89486 3.93337 4.02414 4.04401 4.24719 4.28144 4.42148 4.55104 4.76202 4.82278 4.87484 5.06229 5.12605 5.27761 5.36323 5.48755 5.60723 5.76874 5.93203 6.18895 6.32963 6.60926 6.63999 6.77518 6.89374 7.37603 8.93316 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.008541 B = 0.005106 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.570675 B = 5482.328676 C = 6592.592229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.429 3.571 5 O -0.522 6.522 6 C 0.080 3.920 7 N -0.442 5.442 8 C 0.210 3.790 9 C -0.539 4.539 10 H 0.076 0.924 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.974 3.026 14 H -0.269 1.269 15 H -0.286 1.286 16 H -0.259 1.259 17 C 0.427 3.573 18 N -0.551 5.551 19 C 0.390 3.610 20 Cl 0.033 6.967 21 N -0.534 5.534 22 C 0.283 3.717 23 N -0.559 5.559 24 H 0.452 0.548 25 C 0.305 3.695 26 N -0.493 5.493 27 C -0.078 4.078 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.009 0.991 36 H 0.011 0.989 37 H 0.264 0.736 38 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.353 1.739 -18.588 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.021 4.021 3 O -0.270 6.270 4 C 0.271 3.729 5 O -0.410 6.410 6 C -0.047 4.047 7 N -0.157 5.157 8 C 0.086 3.914 9 C -0.577 4.577 10 H 0.094 0.906 11 C -0.193 4.193 12 N -0.568 5.568 13 Si 0.797 3.203 14 H -0.194 1.194 15 H -0.212 1.212 16 H -0.183 1.183 17 C 0.180 3.820 18 N -0.277 5.277 19 C 0.093 3.907 20 Cl 0.061 6.939 21 N -0.260 5.260 22 C 0.038 3.962 23 N -0.176 5.176 24 H 0.296 0.704 25 C 0.018 3.982 26 N -0.213 5.213 27 C -0.204 4.204 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.027 0.973 36 H 0.029 0.971 37 H 0.073 0.927 38 H 0.312 0.688 Dipole moment (debyes) X Y Z Total from point charges -11.637 1.546 -17.804 21.326 hybrid contribution 0.660 -1.176 0.244 1.370 sum -10.977 0.370 -17.560 20.712 Atomic orbital electron populations 1.21793 0.89090 1.04499 1.04127 1.23252 0.97885 0.79505 1.01470 1.86499 1.23272 1.33449 1.83761 1.25301 0.81433 0.94296 0.71898 1.90759 1.60610 1.43916 1.45700 1.22196 0.83417 0.90144 1.08949 1.59177 1.08221 1.44760 1.03512 1.19587 0.94028 0.93936 0.83860 1.21503 1.43447 0.99421 0.93323 0.90597 1.25955 0.94452 0.97196 1.01720 1.70167 1.42912 1.20496 1.23225 0.85321 0.77933 0.79105 0.77892 1.19386 1.21216 1.18284 1.19546 0.87863 0.84384 0.90176 1.68002 1.20000 1.07418 1.32291 1.22365 0.92955 0.91728 0.83659 1.98392 1.61471 1.36690 1.97330 1.66506 1.16390 1.18357 1.24773 1.18751 0.95367 0.92504 0.89628 1.42813 1.40235 1.25581 1.09019 0.70363 1.27020 0.92788 0.87937 0.90474 1.70303 1.18538 1.21329 1.11141 1.19801 1.06642 1.00238 0.93674 0.88097 0.91027 0.90477 0.92371 0.92781 0.84016 0.83013 0.97340 0.97095 0.92729 0.68756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 10.29 71.98 0.74 -1.80 16 2 C 0.05 1.51 6.19 71.98 0.45 1.95 16 3 O -0.35 -12.06 10.22 -51.49 -0.53 -12.58 16 4 C 0.43 17.68 7.24 71.23 0.52 18.19 16 5 O -0.52 -25.58 12.20 21.99 0.27 -25.31 16 6 C 0.08 3.15 5.56 85.56 0.48 3.63 16 7 N -0.44 -20.80 4.70 -709.28 -3.33 -24.13 16 8 C 0.21 11.95 3.86 85.56 0.33 12.28 16 9 C -0.54 -30.71 8.40 25.60 0.22 -30.49 16 10 H 0.08 4.06 7.70 -2.91 -0.02 4.04 16 11 C 0.01 0.33 5.46 84.66 0.46 0.80 16 12 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 13 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 16 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 17 C 0.43 19.24 4.56 133.46 0.61 19.85 16 18 N -0.55 -26.58 7.96 -187.68 -1.49 -28.07 16 19 C 0.39 16.32 8.16 180.78 1.48 17.79 16 20 Cl 0.03 1.22 29.25 -2.72 -0.08 1.14 16 21 N -0.53 -19.31 10.43 -188.60 -1.97 -21.27 16 22 C 0.28 8.85 8.51 133.86 1.14 9.98 16 23 N -0.56 -9.34 6.20 -195.83 -1.21 -10.55 16 24 H 0.45 3.60 8.96 -92.70 -0.83 2.77 16 25 C 0.30 4.24 12.98 179.95 2.34 6.58 16 26 N -0.49 -13.30 9.94 -191.37 -1.90 -15.20 16 27 C -0.08 -2.82 6.60 39.69 0.26 -2.56 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 32 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 33 H 0.14 5.47 7.21 -2.39 -0.02 5.45 16 34 H 0.15 5.04 6.55 -2.39 -0.02 5.02 16 35 H 0.01 0.55 5.80 -2.39 -0.01 0.53 16 36 H 0.01 0.70 7.28 -2.38 -0.02 0.68 16 37 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.30 -0.34 8.06 -2.91 -0.02 -0.37 16 Total: -1.00 -86.07 343.43 1.38 -84.69 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 0.31 Total: 6.46 kcal Atomic # 6 Polarization: 47.20 SS G_CDS: 9.01 Total: 56.21 kcal Atomic # 7 Polarization: -147.25 SS G_CDS: -9.63 Total: -156.87 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.26 Total: -37.89 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 17 Polarization: 1.22 SS G_CDS: -0.08 Total: 1.14 kcal Total: -86.07 1.38 -84.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157150599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.649 kcal (2) G-P(sol) polarization free energy of solvation -86.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds