Wall clock time and date at job start Tue Mar 31 2020 22:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45189 * 109.47346 * 2 1 4 4 C 1.34236 * 117.00046 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99689 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00077 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.46996 * 186.09609 * 6 4 3 8 8 C 1.46899 * 110.99708 * 291.21842 * 7 6 4 9 9 C 1.50700 * 109.47203 * 288.19259 * 8 7 6 10 10 H 1.07994 * 119.99776 * 354.62319 * 9 8 7 11 11 C 1.37870 * 119.99764 * 174.61725 * 9 8 7 12 12 N 1.31513 * 120.00418 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99683 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47358 * 60.00247 * 13 11 9 15 15 H 1.48505 * 109.47114 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47144 * 299.99948 * 13 11 9 17 17 C 1.39177 * 110.99924 * 55.17412 * 7 6 4 18 18 N 1.32424 * 120.40380 * 236.04634 * 17 7 6 19 19 N 1.28212 * 122.74595 * 179.97438 * 18 17 7 20 20 C 1.31677 * 122.98575 * 0.02562 * 19 18 17 21 21 Cl 1.73595 * 120.32982 * 179.97438 * 20 19 18 22 22 C 1.40119 * 119.33329 * 359.97438 * 20 19 18 23 23 N 1.35179 * 135.34093 * 180.02562 * 22 20 19 24 24 C 1.30328 * 109.58603 * 180.02562 * 23 22 20 25 25 N 1.35984 * 110.06375 * 359.97438 * 24 23 22 26 26 H 0.97006 * 126.33464 * 179.73874 * 25 24 23 27 27 C 1.37452 * 107.32054 * 0.02562 * 25 24 23 28 28 H 1.08995 * 109.46858 * 59.99543 * 1 2 3 29 29 H 1.08997 * 109.47135 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46610 * 299.99883 * 1 2 3 31 31 H 1.09003 * 109.46610 * 240.00117 * 2 1 3 32 32 H 1.08995 * 109.46858 * 120.00457 * 2 1 3 33 33 H 1.09000 * 109.47166 * 66.09369 * 6 4 3 34 34 H 1.09005 * 109.46702 * 306.09692 * 6 4 3 35 35 H 1.08993 * 109.47255 * 48.19808 * 8 7 6 36 36 H 1.09002 * 109.46670 * 168.19544 * 8 7 6 37 37 H 0.96998 * 120.00042 * 180.02562 * 12 11 9 38 38 H 1.08000 * 124.96801 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3449 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0015 6 6 3.9209 2.9372 -0.0012 7 7 5.3806 2.8632 -0.1487 8 6 6.0027 2.2898 1.0522 9 6 5.9317 3.2872 2.1797 10 1 5.5499 4.2810 1.9982 11 6 6.3540 2.9309 3.4428 12 7 6.8192 1.7208 3.6637 13 14 6.2652 4.1670 4.8406 14 1 4.8554 4.5891 5.0394 15 1 6.7758 3.5421 6.0872 16 1 7.0945 5.3527 4.5062 17 6 5.7310 2.1406 -1.2854 18 7 6.5282 1.0874 -1.1908 19 7 6.8791 0.3896 -2.2075 20 6 6.4796 0.6576 -3.4333 21 17 6.9981 -0.3337 -4.7607 22 6 5.6317 1.7508 -3.6554 23 7 5.0420 2.3059 -4.7377 24 6 4.3369 3.3383 -4.3696 25 7 4.4296 3.5108 -3.0239 26 1 4.0021 4.2087 -2.5031 27 6 5.2465 2.5172 -2.5393 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.6754 3.4325 0.9383 34 1 3.5000 3.5041 -0.8316 35 1 5.4729 1.3809 1.3371 36 1 7.0456 2.0519 0.8427 37 1 7.1160 1.4701 4.5525 38 1 3.7622 3.9648 -5.0357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161845.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:40 Heat of formation + Delta-G solvation = 38.519085 kcal Electronic energy + Delta-G solvation = -27889.000559 eV Core-core repulsion = 23795.096813 eV Total energy + Delta-G solvation = -4093.903746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.74613 -40.56086 -39.38930 -37.63047 -36.50585 -35.80889 -33.27719 -32.62752 -31.86969 -30.90683 -30.68209 -28.35455 -26.51389 -24.18509 -23.99649 -23.19877 -22.26164 -21.43849 -20.55558 -19.25216 -17.94298 -17.68836 -17.04491 -16.63110 -16.53303 -16.03591 -15.73901 -15.37328 -15.01843 -14.68951 -14.31585 -14.19573 -13.96003 -13.65802 -13.37543 -12.88708 -12.37365 -12.29218 -12.06304 -11.67487 -11.62201 -11.40485 -11.28928 -11.08153 -10.93626 -10.89772 -10.73769 -10.57763 -10.49469 -10.42880 -10.12816 -9.78510 -9.56653 -9.28854 -8.95658 -8.49859 -7.76793 -6.11643 -4.18794 0.64830 1.11312 1.89565 2.39468 2.47534 2.52384 2.80704 3.24745 3.30649 3.31765 3.58275 3.80869 3.95602 4.30222 4.37153 4.50820 4.70858 4.78844 4.88027 4.94453 5.00617 5.15060 5.22330 5.24312 5.42977 5.59905 5.64625 5.70516 5.75139 5.85378 5.96123 6.54445 6.64450 6.87247 7.11140 7.38862 7.52173 7.63096 7.88504 7.98844 8.17533 8.84876 9.09322 9.45333 10.97582 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.009972 B = 0.004592 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.199969 B = 6096.497858 C = 7320.981887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.423 3.577 5 O -0.474 6.474 6 C 0.075 3.925 7 N -0.444 5.444 8 C 0.184 3.816 9 C -0.534 4.534 10 H 0.064 0.936 11 C 0.064 3.936 12 N -0.882 5.882 13 Si 0.899 3.101 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.313 3.687 18 N -0.226 5.226 19 N -0.216 5.216 20 C 0.144 3.856 21 Cl -0.012 7.012 22 C 0.060 3.940 23 N -0.470 5.470 24 C 0.268 3.732 25 N -0.567 5.567 26 H 0.432 0.568 27 C 0.016 3.984 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.265 0.735 38 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 3.316 -13.910 18.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.280 6.280 4 C 0.262 3.738 5 O -0.358 6.358 6 C -0.054 4.054 7 N -0.162 5.162 8 C 0.061 3.939 9 C -0.572 4.572 10 H 0.082 0.918 11 C -0.140 4.140 12 N -0.519 5.519 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 C 0.066 3.934 18 N -0.069 5.069 19 N -0.055 5.055 20 C -0.040 4.040 21 Cl 0.016 6.984 22 C -0.072 4.072 23 N -0.190 5.190 24 C -0.021 4.021 25 N -0.179 5.179 26 H 0.274 0.726 27 C -0.108 4.108 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.166 0.834 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.747 1.915 -13.652 17.480 hybrid contribution -1.257 1.315 0.909 2.034 sum -12.005 3.230 -12.743 17.803 Atomic orbital electron populations 1.21783 0.92773 1.02784 1.03282 1.22970 0.95094 0.80660 1.02633 1.86479 1.24883 1.32206 1.84477 1.25045 0.80920 0.94320 0.73501 1.90806 1.59546 1.42478 1.43010 1.22068 0.86280 0.90411 1.06611 1.59907 1.05510 1.45594 1.05168 1.20228 0.96572 0.95306 0.81775 1.21038 1.44690 0.98617 0.92889 0.91788 1.24955 0.95012 0.95354 0.98657 1.69980 1.41133 1.18270 1.22515 0.86555 0.78390 0.81191 0.81226 1.20196 1.21167 1.20057 1.21076 0.93880 0.89415 0.89050 1.73505 1.14023 1.01259 1.18110 1.72510 1.17083 1.21665 0.94201 1.22644 0.97649 0.92219 0.91442 1.98372 1.89412 1.68691 1.41952 1.19258 1.00824 0.97385 0.89733 1.70393 1.12046 1.08854 1.27717 1.25694 0.98291 0.96037 0.82037 1.43246 1.39893 1.25544 1.09184 0.72637 1.19415 1.00910 0.94949 0.95502 0.91778 0.90414 0.91395 0.91725 0.91024 0.83426 0.89183 0.93880 0.92676 0.92493 0.75539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.29 37.16 0.38 -1.02 16 2 C 0.06 0.81 6.19 37.16 0.23 1.04 16 3 O -0.36 -5.58 10.22 -39.27 -0.40 -5.98 16 4 C 0.42 7.66 7.23 36.01 0.26 7.92 16 5 O -0.47 -10.47 12.20 -18.75 -0.23 -10.70 16 6 C 0.08 1.22 5.55 -4.98 -0.03 1.19 16 7 N -0.44 -8.94 4.71 -175.71 -0.83 -9.77 16 8 C 0.18 4.67 3.86 -4.98 -0.02 4.65 16 9 C -0.53 -13.98 8.39 -34.44 -0.29 -14.27 16 10 H 0.06 1.57 7.72 -52.49 -0.40 1.17 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 13 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 C 0.31 6.27 4.59 -154.65 -0.71 5.56 16 18 N -0.23 -5.18 9.01 31.27 0.28 -4.90 16 19 N -0.22 -4.62 11.43 33.09 0.38 -4.24 16 20 C 0.14 2.67 7.42 -16.91 -0.13 2.55 16 21 Cl -0.01 -0.19 29.16 -51.86 -1.51 -1.70 16 22 C 0.06 1.01 7.15 -84.73 -0.61 0.40 16 23 N -0.47 -6.49 11.26 -11.99 -0.14 -6.62 16 24 C 0.27 2.44 12.97 -89.65 -1.16 1.27 16 25 N -0.57 -5.96 5.73 -11.62 -0.07 -6.03 16 26 H 0.43 3.11 7.43 -40.82 -0.30 2.80 16 27 C 0.02 0.26 6.66 -83.88 -0.56 -0.30 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 33 H 0.15 2.37 7.21 -51.93 -0.37 2.00 16 34 H 0.09 1.03 5.76 -51.93 -0.30 0.73 16 35 H 0.04 1.22 5.85 -51.93 -0.30 0.92 16 36 H 0.06 1.58 7.28 -51.93 -0.38 1.20 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.23 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -35.59 341.94 -8.10 -43.69 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -3.73 Total: 0.01 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -2.72 Total: 10.65 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.37 Total: -56.63 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.63 Total: -16.68 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.51 Total: -1.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.59 -8.10 -43.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161845.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.212 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds