Wall clock time and date at job start Tue Mar 31 2020 22:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 117.00027 * 2 1 4 4 O 1.20827 * 119.99953 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00214 * 180.28064 * 3 2 1 6 6 C 1.50698 * 109.46824 * 299.72083 * 5 3 2 7 7 O 1.20826 * 120.00182 * 239.99856 * 6 5 3 8 8 O 1.34231 * 120.00173 * 59.99911 * 6 5 3 9 9 C 1.45203 * 117.00334 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47389 * 179.72231 * 5 3 2 11 11 N 1.31923 * 119.51096 * 67.97846 * 10 5 3 12 12 C 1.31755 * 121.81283 * 179.71217 * 11 10 5 13 13 C 1.39113 * 120.62846 * 0.56198 * 12 11 10 14 14 N 1.39280 * 120.50745 * 179.75051 * 13 12 11 15 15 C 1.32633 * 120.00276 * 359.97187 * 14 13 12 16 16 H 1.08006 * 119.99836 * 0.02562 * 15 14 13 17 17 C 1.46798 * 120.00306 * 179.97438 * 15 14 13 18 18 N 1.29326 * 120.00329 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00196 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47001 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47277 * 119.99988 * 19 17 15 22 22 H 1.48493 * 109.47219 * 240.00242 * 19 17 15 23 23 C 1.39464 * 118.98327 * 359.72598 * 13 12 11 24 24 C 1.38279 * 119.51880 * 248.25015 * 10 5 3 25 25 N 1.48007 * 120.36749 * 0.02562 * 24 10 5 26 26 O 1.31701 * 120.00156 * 219.40476 * 25 24 10 27 27 O 1.31706 * 120.00300 * 39.40438 * 25 24 10 28 28 H 1.08998 * 109.47407 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47506 * 299.99835 * 1 2 3 30 30 H 1.09003 * 109.47490 * 59.99936 * 1 2 3 31 31 H 1.08993 * 109.47212 * 59.71850 * 5 3 2 32 32 H 1.08998 * 109.46826 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.46970 * 300.00071 * 9 8 6 34 34 H 1.08996 * 109.46906 * 60.00165 * 9 8 6 35 35 H 1.07997 * 119.68586 * 180.29038 * 12 11 10 36 36 H 0.97005 * 120.00242 * 179.97438 * 14 13 12 37 37 H 0.97003 * 120.00288 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.82809 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0064 6 6 4.1101 0.5950 1.2236 7 8 4.7763 1.2198 2.0146 8 8 3.8544 -0.7047 1.4406 9 6 4.4097 -1.2936 2.6461 10 6 3.9935 2.7201 -0.0119 11 7 3.7693 3.4681 1.0514 12 6 4.1288 4.7348 1.0977 13 6 4.7536 5.3345 0.0091 14 7 5.1279 6.6752 0.0590 15 6 4.8886 7.3904 1.1500 16 1 4.4039 6.9331 2.0000 17 6 5.2836 8.8033 1.2028 18 7 5.8644 9.3508 0.1852 19 14 4.9472 9.8104 2.7397 20 1 4.2781 8.9569 3.7542 21 1 6.2298 10.3184 3.2892 22 1 4.0668 10.9563 2.3978 23 6 5.0001 4.5726 -1.1327 24 6 4.6097 3.2441 -1.1335 25 7 4.8487 2.3945 -2.3216 26 8 5.9727 2.5097 -2.9982 27 8 3.9373 1.5232 -2.7024 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9523 0.7785 -0.8966 32 1 4.1291 -2.3455 2.6991 33 1 5.4962 -1.2084 2.6248 34 1 4.0211 -0.7691 3.5189 35 1 3.9325 5.3142 1.9878 36 1 5.5635 7.0859 -0.7043 37 1 6.1251 10.2845 0.2200 38 1 5.4837 5.0079 -1.9948 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183840.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:45 Heat of formation + Delta-G solvation = -83.969795 kcal Electronic energy + Delta-G solvation = -29934.580418 eV Core-core repulsion = 25362.363240 eV Total energy + Delta-G solvation = -4572.217178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.104 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.00125 -39.72916 -39.69152 -38.22720 -36.81669 -36.09679 -35.99728 -34.11375 -33.36150 -32.20911 -31.82063 -28.79753 -27.65926 -27.12665 -25.83276 -24.86666 -23.02053 -22.05428 -21.57823 -20.21102 -19.14376 -18.21868 -18.00392 -17.63233 -17.34407 -16.96820 -16.47083 -16.14834 -15.94929 -15.76212 -15.63856 -15.16572 -14.85797 -14.69012 -14.01839 -13.68260 -13.53099 -13.23487 -12.83515 -12.71311 -12.59534 -12.56451 -12.04424 -11.99980 -11.89539 -11.83659 -11.23805 -11.07636 -10.94363 -10.87557 -10.73495 -10.64978 -10.59289 -10.54297 -10.12786 -10.07248 -9.73189 -9.38895 -8.94932 -7.65101 -7.60878 -4.16910 -0.09578 1.58086 1.63890 1.94432 2.09930 2.45541 2.72282 2.73338 2.79337 2.83860 3.09226 3.41486 3.99300 4.29903 4.53856 4.56055 4.93530 5.05442 5.11248 5.16461 5.21885 5.23890 5.29149 5.45830 5.54251 5.57540 5.59334 5.60185 5.68193 6.15396 6.29260 6.31766 6.44176 6.53014 6.62606 6.73893 7.18929 7.25484 7.64037 7.89656 8.00704 8.40355 8.66116 8.81010 9.47584 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012746 B = 0.003533 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.280204 B = 7922.979662 C = 8574.386149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.348 6.348 3 C 0.481 3.519 4 O -0.474 6.474 5 C -0.004 4.004 6 C 0.469 3.531 7 O -0.465 6.465 8 O -0.350 6.350 9 C 0.036 3.964 10 C -0.017 4.017 11 N -0.364 5.364 12 C 0.027 3.973 13 C 0.095 3.905 14 N -0.458 5.458 15 C -0.315 4.315 16 H 0.128 0.872 17 C 0.042 3.958 18 N -0.806 5.806 19 Si 0.948 3.052 20 H -0.252 1.252 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.139 4.139 24 C 0.050 3.950 25 N -0.013 5.013 26 O -0.170 6.170 27 O -0.194 6.194 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.153 0.847 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.157 0.843 36 H 0.404 0.596 37 H 0.301 0.699 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 -9.757 2.759 10.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.265 6.265 3 C 0.321 3.679 4 O -0.358 6.358 5 C -0.025 4.025 6 C 0.308 3.692 7 O -0.349 6.349 8 O -0.267 6.267 9 C -0.058 4.058 10 C -0.156 4.156 11 N -0.072 5.072 12 C -0.148 4.148 13 C -0.037 4.037 14 N -0.046 5.046 15 C -0.449 4.449 16 H 0.145 0.855 17 C -0.178 4.178 18 N -0.432 5.432 19 Si 0.770 3.230 20 H -0.175 1.175 21 H -0.193 1.193 22 H -0.193 1.193 23 C -0.169 4.169 24 C -0.039 4.039 25 N 0.464 4.536 26 O -0.368 6.368 27 O -0.382 6.382 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.169 0.831 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.174 0.826 36 H 0.240 0.760 37 H 0.113 0.887 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.396 -8.809 4.271 10.732 hybrid contribution 0.582 0.972 -0.856 1.419 sum -3.814 -7.838 3.415 9.362 Atomic orbital electron populations 1.23240 0.76660 1.03387 1.02472 1.86558 1.22989 1.32688 1.84274 1.22715 0.90158 0.81781 0.73255 1.90685 1.65857 1.36177 1.43107 1.19449 0.90474 0.94361 0.98223 1.22894 0.78846 0.80584 0.86832 1.90709 1.34880 1.64864 1.44427 1.86574 1.70600 1.25514 1.43982 1.23247 0.99113 0.98253 0.85177 1.17845 1.13086 0.93412 0.91254 1.67029 1.12200 1.05525 1.22458 1.21878 1.04255 0.90384 0.98322 1.18129 1.04864 0.85549 0.95188 1.40046 1.43680 1.05297 1.15577 1.21203 1.36644 0.91595 0.95414 0.85483 1.27310 0.93902 0.96997 0.99607 1.68624 1.28046 1.15646 1.30870 0.85485 0.79385 0.79012 0.79124 1.17497 1.19317 1.19333 1.20084 1.05876 0.91170 0.99732 1.20558 1.08460 0.91053 0.83827 1.50724 1.00673 1.00349 1.01806 1.96228 1.10279 1.75011 1.55280 1.96155 1.36927 1.31795 1.73329 0.88194 0.92120 0.91886 0.83056 0.88147 0.92018 0.91967 0.82553 0.76026 0.88689 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.35 -5.44 10.00 -41.96 -0.42 -5.86 16 3 C 0.48 9.06 7.22 36.00 0.26 9.32 16 4 O -0.47 -10.05 15.56 -18.75 -0.29 -10.34 16 5 C 0.00 -0.09 2.48 -94.08 -0.23 -0.32 16 6 C 0.47 8.66 7.17 36.00 0.26 8.92 16 7 O -0.47 -9.64 14.96 -18.75 -0.28 -9.93 16 8 O -0.35 -5.35 10.00 -41.97 -0.42 -5.77 16 9 C 0.04 0.40 10.56 101.05 1.07 1.47 16 10 C -0.02 -0.38 4.48 -82.54 -0.37 -0.75 16 11 N -0.36 -8.12 8.72 -9.24 -0.08 -8.20 16 12 C 0.03 0.58 10.47 -17.26 -0.18 0.40 16 13 C 0.10 1.98 6.63 -83.69 -0.55 1.42 16 14 N -0.46 -9.38 5.30 -8.30 -0.04 -9.43 16 15 C -0.32 -6.52 9.81 -13.75 -0.13 -6.65 16 16 H 0.13 2.52 5.73 -52.48 -0.30 2.22 16 17 C 0.04 0.83 5.70 -15.15 -0.09 0.74 16 18 N -0.81 -16.61 13.08 56.00 0.73 -15.88 16 19 Si 0.95 15.40 29.65 -169.99 -5.04 10.36 16 20 H -0.25 -4.07 7.11 56.52 0.40 -3.67 16 21 H -0.27 -4.36 7.11 56.52 0.40 -3.96 16 22 H -0.27 -4.37 7.11 56.52 0.40 -3.97 16 23 C -0.14 -2.84 9.74 -39.04 -0.38 -3.22 16 24 C 0.05 1.05 6.52 -79.85 -0.52 0.53 16 25 N -0.01 -0.26 4.60 34.01 0.16 -0.10 16 26 O -0.17 -3.47 19.76 -31.57 -0.62 -4.09 16 27 O -0.19 -3.93 17.05 -31.57 -0.54 -4.47 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.15 2.81 5.15 -51.93 -0.27 2.54 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 35 H 0.16 3.11 5.97 -52.49 -0.31 2.80 16 36 H 0.40 8.13 7.99 -40.82 -0.33 7.80 16 37 H 0.30 5.62 8.26 -40.82 -0.34 5.29 16 38 H 0.14 2.51 8.06 -52.48 -0.42 2.09 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -27.45 351.31 -4.66 -32.11 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -3.30 Total: 12.96 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 0.19 Total: 13.35 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.76 Total: -33.61 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -2.57 Total: -40.46 kcal Atomic # 14 Polarization: 15.40 SS G_CDS: -5.04 Total: 10.36 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.45 -4.66 -32.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183840.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.861 kcal (2) G-P(sol) polarization free energy of solvation -27.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds