Wall clock time and date at job start Tue Mar 31 2020 22:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 117.00027 * 2 1 4 4 O 1.20827 * 119.99953 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00214 * 180.28064 * 3 2 1 6 6 C 1.50698 * 109.46824 * 299.72083 * 5 3 2 7 7 O 1.20826 * 120.00182 * 239.99856 * 6 5 3 8 8 O 1.34231 * 120.00173 * 59.99911 * 6 5 3 9 9 C 1.45203 * 117.00334 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47389 * 179.72231 * 5 3 2 11 11 N 1.31923 * 119.51096 * 67.97846 * 10 5 3 12 12 C 1.31755 * 121.81283 * 179.71217 * 11 10 5 13 13 C 1.39113 * 120.62846 * 0.56198 * 12 11 10 14 14 N 1.39280 * 120.50745 * 179.75051 * 13 12 11 15 15 C 1.32633 * 120.00276 * 359.97187 * 14 13 12 16 16 H 1.08006 * 119.99836 * 0.02562 * 15 14 13 17 17 C 1.46798 * 120.00306 * 179.97438 * 15 14 13 18 18 N 1.29326 * 120.00329 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00196 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47001 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47277 * 119.99988 * 19 17 15 22 22 H 1.48493 * 109.47219 * 240.00242 * 19 17 15 23 23 C 1.39464 * 118.98327 * 359.72598 * 13 12 11 24 24 C 1.38279 * 119.51880 * 248.25015 * 10 5 3 25 25 N 1.48007 * 120.36749 * 0.02562 * 24 10 5 26 26 O 1.31701 * 120.00156 * 219.40476 * 25 24 10 27 27 O 1.31706 * 120.00300 * 39.40438 * 25 24 10 28 28 H 1.08998 * 109.47407 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47506 * 299.99835 * 1 2 3 30 30 H 1.09003 * 109.47490 * 59.99936 * 1 2 3 31 31 H 1.08993 * 109.47212 * 59.71850 * 5 3 2 32 32 H 1.08998 * 109.46826 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.46970 * 300.00071 * 9 8 6 34 34 H 1.08996 * 109.46906 * 60.00165 * 9 8 6 35 35 H 1.07997 * 119.68586 * 180.29038 * 12 11 10 36 36 H 0.97005 * 120.00242 * 179.97438 * 14 13 12 37 37 H 0.97003 * 120.00288 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.82809 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0064 6 6 4.1101 0.5950 1.2236 7 8 4.7763 1.2198 2.0146 8 8 3.8544 -0.7047 1.4406 9 6 4.4097 -1.2936 2.6461 10 6 3.9935 2.7201 -0.0119 11 7 3.7693 3.4681 1.0514 12 6 4.1288 4.7348 1.0977 13 6 4.7536 5.3345 0.0091 14 7 5.1279 6.6752 0.0590 15 6 4.8886 7.3904 1.1500 16 1 4.4039 6.9331 2.0000 17 6 5.2836 8.8033 1.2028 18 7 5.8644 9.3508 0.1852 19 14 4.9472 9.8104 2.7397 20 1 4.2781 8.9569 3.7542 21 1 6.2298 10.3184 3.2892 22 1 4.0668 10.9563 2.3978 23 6 5.0001 4.5726 -1.1327 24 6 4.6097 3.2441 -1.1335 25 7 4.8487 2.3945 -2.3216 26 8 5.9727 2.5097 -2.9982 27 8 3.9373 1.5232 -2.7024 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9523 0.7785 -0.8966 32 1 4.1291 -2.3455 2.6991 33 1 5.4962 -1.2084 2.6248 34 1 4.0211 -0.7691 3.5189 35 1 3.9325 5.3142 1.9878 36 1 5.5635 7.0859 -0.7043 37 1 6.1251 10.2845 0.2200 38 1 5.4837 5.0079 -1.9948 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183840.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:42 Heat of formation + Delta-G solvation = -101.194594 kcal Electronic energy + Delta-G solvation = -29935.327341 eV Core-core repulsion = 25362.363240 eV Total energy + Delta-G solvation = -4572.964102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.104 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -42.16847 -41.55475 -40.92870 -39.46256 -37.53196 -37.29574 -36.78299 -36.27070 -33.76308 -32.66359 -32.40697 -30.40648 -28.59963 -28.45261 -27.40534 -26.21000 -24.20519 -23.25289 -22.99773 -21.67052 -21.42193 -19.27604 -19.13998 -18.73106 -18.60282 -18.06838 -17.65424 -17.36460 -16.99442 -16.89660 -16.87237 -16.36936 -16.29165 -15.97204 -15.37974 -14.76146 -14.66285 -14.57124 -14.37746 -14.22037 -14.00621 -13.81827 -13.67748 -13.55819 -13.11241 -12.97685 -12.87503 -12.62901 -12.03598 -11.76691 -11.74295 -11.73832 -11.72729 -11.34109 -10.71058 -10.48251 -10.41411 -10.01205 -9.89067 -9.60743 -9.52363 -5.81668 -1.65675 0.27445 0.69141 0.93856 0.94086 1.02504 1.19885 1.26309 1.68269 1.75775 1.94036 2.03790 2.10594 2.49468 2.75587 3.17015 3.24136 3.52341 3.89314 3.93309 4.03679 4.17157 4.21150 4.26267 4.33805 4.35592 4.36340 4.38086 4.54111 4.64853 4.66481 4.70068 5.01983 5.11430 5.22904 5.32030 5.34257 5.69439 6.11887 6.22516 6.68173 6.79352 7.57688 7.76801 8.65906 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012746 B = 0.003533 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.280204 B = 7922.979662 C = 8574.386149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.493 3.507 4 O -0.511 6.511 5 C -0.014 4.014 6 C 0.483 3.517 7 O -0.491 6.491 8 O -0.358 6.358 9 C 0.026 3.974 10 C -0.028 4.028 11 N -0.367 5.367 12 C -0.099 4.099 13 C 0.053 3.947 14 N -0.410 5.410 15 C 0.316 3.684 16 H 0.260 0.740 17 C -0.049 4.049 18 N -0.593 5.593 19 Si 1.045 2.955 20 H -0.202 1.202 21 H -0.246 1.246 22 H -0.246 1.246 23 C -0.105 4.105 24 C 0.021 3.979 25 N -0.109 5.109 26 O -0.686 6.686 27 O -0.658 6.658 28 H 0.141 0.859 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.209 0.791 36 H 0.441 0.559 37 H 0.382 0.618 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 23.759 24.946 34.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.335 3.665 4 O -0.399 6.399 5 C -0.035 4.035 6 C 0.325 3.675 7 O -0.378 6.378 8 O -0.274 6.274 9 C -0.066 4.066 10 C -0.179 4.179 11 N -0.075 5.075 12 C -0.267 4.267 13 C -0.047 4.047 14 N 0.009 4.991 15 C 0.132 3.868 16 H 0.276 0.724 17 C -0.287 4.287 18 N -0.216 5.216 19 Si 0.854 3.146 20 H -0.123 1.123 21 H -0.169 1.169 22 H -0.169 1.169 23 C -0.132 4.132 24 C -0.110 4.110 25 N 0.176 4.824 26 O -0.750 6.750 27 O -0.722 6.722 28 H 0.159 0.841 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.144 0.856 32 H 0.156 0.844 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.225 0.775 36 H 0.284 0.716 37 H 0.204 0.796 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.399 23.239 24.805 34.160 hybrid contribution 1.004 0.270 -2.603 2.803 sum -2.394 23.509 22.202 32.425 Atomic orbital electron populations 1.23616 0.74612 1.06000 1.02359 1.86562 1.25324 1.31729 1.83772 1.22943 0.90350 0.81840 0.71400 1.90488 1.66465 1.37040 1.45903 1.19470 0.90128 0.96169 0.97743 1.22800 0.77976 0.81056 0.85706 1.90526 1.36242 1.65769 1.45281 1.86590 1.70548 1.24304 1.45995 1.23654 0.99141 1.00088 0.83750 1.17813 1.17482 0.92303 0.90260 1.66611 1.11198 1.06263 1.23424 1.21999 1.13588 0.92159 0.98929 1.18471 1.07213 0.82030 0.96957 1.42619 1.32055 1.08138 1.16244 1.28074 0.79094 0.90077 0.89520 0.72426 1.30422 0.96429 0.94962 1.06933 1.68539 1.01855 1.21653 1.29527 0.84114 0.81761 0.77827 0.70944 1.12279 1.16910 1.16931 1.20458 1.02991 0.91919 0.97854 1.19905 1.10453 0.92349 0.88306 1.47029 1.04650 1.18248 1.12447 1.95499 1.18689 1.91047 1.69717 1.95442 1.43620 1.50072 1.83111 0.84116 0.90936 0.93108 0.85609 0.84358 0.92266 0.91017 0.77519 0.71616 0.79563 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 10.56 113.37 1.20 2.11 16 2 O -0.36 -17.02 10.00 -48.80 -0.49 -17.51 16 3 C 0.49 27.74 7.22 71.24 0.51 28.25 16 4 O -0.51 -29.28 15.56 21.96 0.34 -28.93 16 5 C -0.01 -0.89 2.48 -13.03 -0.03 -0.92 16 6 C 0.48 25.50 7.17 71.24 0.51 26.01 16 7 O -0.49 -25.64 14.96 21.96 0.33 -25.31 16 8 O -0.36 -15.83 10.00 -48.83 -0.49 -16.31 16 9 C 0.03 0.80 10.56 113.37 1.20 1.99 16 10 C -0.03 -1.69 4.48 42.56 0.19 -1.50 16 11 N -0.37 -18.10 8.72 -183.16 -1.60 -19.69 16 12 C -0.10 -3.33 10.47 84.91 0.89 -2.44 16 13 C 0.05 1.70 6.63 38.46 0.25 1.96 16 14 N -0.41 -5.37 5.30 -180.17 -0.96 -6.33 16 15 C 0.32 -0.02 9.81 86.81 0.85 0.83 16 16 H 0.26 -2.16 5.73 -2.91 -0.02 -2.17 16 17 C -0.05 0.19 5.70 87.30 0.50 0.69 16 18 N -0.59 -0.02 13.08 23.26 0.30 0.28 16 19 Si 1.05 -7.88 29.65 68.60 2.03 -5.85 16 20 H -0.20 1.82 7.11 99.48 0.71 2.53 16 21 H -0.25 1.18 7.11 99.48 0.71 1.88 16 22 H -0.25 1.18 7.11 99.48 0.71 1.88 16 23 C -0.10 -5.43 9.74 22.62 0.22 -5.21 16 24 C 0.02 1.41 6.52 36.44 0.24 1.64 16 25 N -0.11 -9.32 4.60 -46.31 -0.21 -9.54 16 26 O -0.69 -63.02 19.76 3.51 0.07 -62.95 16 27 O -0.66 -59.58 17.05 3.50 0.06 -59.52 16 28 H 0.14 3.42 8.14 -2.39 -0.02 3.40 16 29 H 0.07 2.22 8.13 -2.39 -0.02 2.20 16 30 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 31 H 0.13 9.30 5.15 -2.39 -0.01 9.29 16 32 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 34 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 35 H 0.21 3.31 5.97 -2.91 -0.02 3.30 16 36 H 0.44 5.11 7.99 -92.70 -0.74 4.37 16 37 H 0.38 -1.62 8.26 -92.71 -0.77 -2.38 16 38 H 0.11 5.91 8.06 -2.91 -0.02 5.89 16 Total: -1.00 -165.98 351.31 6.35 -159.62 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: 0.43 Total: 38.64 kcal Atomic # 6 Polarization: 46.88 SS G_CDS: 6.53 Total: 53.41 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: -2.46 Total: -35.28 kcal Atomic # 8 Polarization: -210.36 SS G_CDS: -0.18 Total: -210.54 kcal Atomic # 14 Polarization: -7.88 SS G_CDS: 2.03 Total: -5.85 kcal Total: -165.98 6.35 -159.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183840.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.430 kcal (2) G-P(sol) polarization free energy of solvation -165.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -159.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds