Wall clock time and date at job start Tue Mar 31 2020 22:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34223 * 117.00498 * 2 1 4 4 O 1.20834 * 119.99981 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00596 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.64284 * 38.90875 * 5 3 2 7 7 C 1.55152 * 110.72414 * 162.25283 * 5 3 2 8 8 C 1.54694 * 101.68005 * 153.69800 * 7 5 3 9 9 N 1.47421 * 104.93787 * 323.27243 * 8 7 5 10 10 S 1.65604 * 125.65120 * 204.07235 * 9 8 7 11 11 O 1.42092 * 106.40464 * 156.15784 * 10 9 8 12 12 O 1.42097 * 106.39638 * 23.23480 * 10 9 8 13 13 C 1.76200 * 107.21833 * 269.69972 * 10 9 8 14 14 H 1.08007 * 120.00063 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00219 * 180.27548 * 13 10 9 16 16 N 1.31517 * 119.99758 * 359.71540 * 15 13 10 17 17 Si 1.86797 * 120.00405 * 179.72245 * 15 13 10 18 18 H 1.48501 * 109.46959 * 59.99445 * 17 15 13 19 19 H 1.48500 * 109.47332 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46875 * 299.99883 * 17 15 13 21 21 C 1.47026 * 108.70711 * 23.81173 * 9 8 7 22 22 H 1.08995 * 109.88498 * 118.57712 * 21 9 8 23 23 C 1.50692 * 109.88379 * 239.59428 * 21 9 8 24 24 C 1.38238 * 120.00315 * 38.27081 * 23 21 9 25 25 C 1.38229 * 120.00265 * 179.80842 * 24 23 21 26 26 C 1.38241 * 119.99991 * 0.41882 * 25 24 23 27 27 C 1.38237 * 119.99930 * 359.81099 * 26 25 24 28 28 C 1.38237 * 119.99849 * 218.53885 * 23 21 9 29 29 H 1.09003 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99653 * 1 2 3 31 31 H 1.09006 * 109.47222 * 59.99716 * 1 2 3 32 32 H 1.09000 * 111.00469 * 271.93913 * 7 5 3 33 33 H 1.08999 * 111.00621 * 35.75041 * 7 5 3 34 34 H 1.09000 * 110.38934 * 204.36421 * 8 7 5 35 35 H 1.08995 * 110.23642 * 82.10783 * 8 7 5 36 36 H 0.96994 * 120.00323 * 179.97438 * 16 15 13 37 37 H 1.07998 * 119.99516 * 359.97438 * 24 23 21 38 38 H 1.07996 * 120.00238 * 180.20830 * 25 24 23 39 39 H 1.07999 * 119.99775 * 179.78867 * 26 25 24 40 40 H 1.07998 * 120.00067 * 179.97438 * 27 26 25 41 41 H 1.07998 * 120.00243 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9913 0.5024 -0.6416 7 6 4.0421 2.6838 -0.4428 8 6 5.4201 2.7818 0.2532 9 7 5.2403 2.1030 1.5494 10 16 6.1460 2.3661 2.9106 11 8 5.3379 1.9753 4.0121 12 8 6.7018 3.6671 2.7773 13 6 7.4998 1.2394 2.8622 14 1 7.6016 0.5528 2.0347 15 6 8.4257 1.2299 3.8838 16 7 8.3015 2.0657 4.8916 17 14 9.8566 0.0301 3.8364 18 1 10.6691 0.2766 2.6180 19 1 10.7026 0.2207 5.0419 20 1 9.3360 -1.3604 3.8112 21 6 4.1196 1.1581 1.4354 22 1 4.4714 0.1423 1.6156 23 6 3.0465 1.5131 2.4320 24 6 2.7533 2.8393 2.6891 25 6 1.7662 3.1649 3.6003 26 6 1.0782 2.1644 4.2611 27 6 1.3747 0.8382 4.0076 28 6 2.3592 0.5125 3.0934 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 4.1449 2.7391 -1.5265 33 1 3.3667 3.4570 -0.0766 34 1 5.6948 3.8254 0.4064 35 1 6.1792 2.2719 -0.3400 36 1 8.9526 2.0589 5.6105 37 1 3.2936 3.6210 2.1758 38 1 1.5348 4.2010 3.7986 39 1 0.3094 2.4188 4.9756 40 1 0.8376 0.0565 4.5241 41 1 2.5909 -0.5236 2.8955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:04 Heat of formation + Delta-G solvation = -135.140898 kcal Electronic energy + Delta-G solvation = -29169.425119 eV Core-core repulsion = 25141.282210 eV Total energy + Delta-G solvation = -4028.142909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.88639 -39.05860 -37.47393 -36.22780 -35.22608 -33.93824 -33.09591 -31.54104 -30.99784 -30.41953 -28.34884 -27.28819 -26.12620 -23.57833 -22.41949 -21.87118 -21.27577 -19.79316 -18.73734 -17.80622 -17.53381 -16.67114 -16.50529 -16.16808 -15.99191 -15.29691 -14.93529 -14.78920 -14.45163 -14.01943 -13.77421 -13.57285 -13.28269 -13.03656 -12.97415 -12.75913 -12.65291 -12.26852 -12.09276 -11.97822 -11.52230 -11.45861 -11.24352 -11.20936 -11.05569 -10.76944 -10.68420 -10.63248 -10.52854 -10.42288 -10.26298 -10.25230 -10.13593 -9.24700 -8.95368 -8.46251 -8.43409 -8.15220 -6.70431 -5.33287 1.71931 1.87660 2.12476 2.34070 2.73703 3.07575 3.12057 3.17365 4.03363 4.12388 4.39675 4.58802 4.64982 4.75099 4.92583 5.05085 5.05694 5.15088 5.23702 5.26900 5.35601 5.46841 5.48413 5.52583 5.59518 5.76186 5.84009 5.89157 5.97195 6.02561 6.10042 6.21917 6.32960 6.38149 6.43677 6.45111 6.69877 6.84966 6.91357 7.05502 7.31662 7.39725 7.44002 7.81963 7.95259 8.87661 10.23165 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.004763 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.616326 B = 5876.878537 C = 6342.431040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.478 3.522 4 O -0.497 6.497 5 C -0.089 4.089 6 H 0.119 0.881 7 C -0.117 4.117 8 C 0.118 3.882 9 N -1.013 6.013 10 S 2.723 3.277 11 O -0.983 6.983 12 O -1.001 7.001 13 C -1.023 5.023 14 H 0.101 0.899 15 C 0.133 3.867 16 N -0.845 5.845 17 Si 0.920 3.080 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.264 1.264 21 C 0.213 3.787 22 H 0.093 0.907 23 C -0.098 4.098 24 C -0.078 4.078 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.126 4.126 28 C -0.096 4.096 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.291 0.709 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.746 -4.515 -9.842 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.320 3.680 4 O -0.383 6.383 5 C -0.109 4.109 6 H 0.137 0.863 7 C -0.156 4.156 8 C -0.008 4.008 9 N -0.847 5.847 10 S 2.825 3.175 11 O -0.973 6.973 12 O -0.992 6.992 13 C -1.156 5.156 14 H 0.120 0.880 15 C -0.085 4.085 16 N -0.475 5.475 17 Si 0.744 3.256 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.188 1.188 21 C 0.105 3.895 22 H 0.111 0.889 23 C -0.100 4.100 24 C -0.096 4.096 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.144 4.144 28 C -0.114 4.114 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.061 -3.452 -8.937 16.198 hybrid contribution 1.007 -1.072 -0.113 1.475 sum -12.053 -4.524 -9.050 15.737 Atomic orbital electron populations 1.23208 0.76719 1.03351 1.02405 1.86499 1.23104 1.33481 1.84167 1.23228 0.91402 0.81457 0.71893 1.90644 1.66765 1.36199 1.44690 1.22221 0.87762 1.01849 0.99102 0.86286 1.22852 0.97349 0.94497 1.00916 1.21874 0.95976 0.98651 0.84288 1.59444 1.44946 1.52579 1.27686 1.00397 0.73303 0.74399 0.69438 1.93407 1.70687 1.84443 1.48794 1.93358 1.79130 1.41458 1.85226 1.30603 1.29907 1.38913 1.16158 0.88031 1.24747 0.97455 0.94023 0.92254 1.69886 1.35920 1.32945 1.08741 0.86211 0.80046 0.80803 0.78580 1.18814 1.20071 1.18806 1.19803 0.85228 0.94459 0.90029 0.88884 1.20043 0.97114 0.94147 0.98656 1.20844 0.96286 0.95726 0.96790 1.21014 0.96707 0.99031 0.97051 1.21027 0.99929 0.93162 0.99550 1.20954 0.98606 0.96188 0.98648 1.20867 0.95892 0.98612 0.96040 0.88376 0.91838 0.92244 0.89519 0.88956 0.89589 0.91388 0.89811 0.86669 0.86531 0.86687 0.86507 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.42 10.56 -39.24 -0.41 -4.84 16 3 C 0.48 6.72 5.33 36.01 0.19 6.91 16 4 O -0.50 -7.94 14.85 -18.76 -0.28 -8.22 16 5 C -0.09 -1.19 3.38 -89.93 -0.30 -1.50 16 6 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 7 C -0.12 -1.53 6.23 -24.70 -0.15 -1.68 16 8 C 0.12 1.87 7.09 -2.65 -0.02 1.85 16 9 N -1.01 -20.22 2.65 -105.76 -0.28 -20.50 16 10 S 2.72 72.23 5.02 -107.50 -0.54 71.69 16 11 O -0.98 -28.29 15.77 -57.17 -0.90 -29.19 16 12 O -1.00 -29.29 17.34 -57.17 -0.99 -30.29 16 13 C -1.02 -28.09 9.75 30.60 0.30 -27.80 16 14 H 0.10 2.53 7.81 -52.48 -0.41 2.12 16 15 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 16 N -0.85 -24.94 13.19 55.43 0.73 -24.21 16 17 Si 0.92 20.49 29.54 -169.99 -5.02 15.47 16 18 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 21 C 0.21 3.67 3.23 -68.10 -0.22 3.45 16 22 H 0.09 1.52 8.03 -51.93 -0.42 1.10 16 23 C -0.10 -1.81 1.90 -104.63 -0.20 -2.01 16 24 C -0.08 -1.50 7.98 -39.58 -0.32 -1.81 16 25 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 26 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 27 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 28 C -0.10 -1.62 9.46 -39.58 -0.37 -1.99 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.32 6.70 -51.93 -0.35 0.97 16 34 H 0.09 1.41 7.78 -51.93 -0.40 1.00 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.29 7.75 8.31 -40.82 -0.34 7.41 16 37 H 0.12 2.22 7.10 -52.49 -0.37 1.84 16 38 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.12 1.77 8.05 -52.49 -0.42 1.35 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -36.82 357.53 -8.94 -45.76 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.31 Total: 5.59 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: -1.32 Total: -26.66 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.45 Total: -44.71 kcal Atomic # 8 Polarization: -69.94 SS G_CDS: -2.59 Total: -72.53 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 72.23 SS G_CDS: -0.54 Total: 71.69 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.82 -8.94 -45.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.383 kcal (2) G-P(sol) polarization free energy of solvation -36.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds