Wall clock time and date at job start Tue Mar 31 2020 22:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34223 * 117.00498 * 2 1 4 4 O 1.20834 * 119.99981 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00596 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.64284 * 38.90875 * 5 3 2 7 7 C 1.55152 * 110.72414 * 162.25283 * 5 3 2 8 8 C 1.54694 * 101.68005 * 153.69800 * 7 5 3 9 9 N 1.47421 * 104.93787 * 323.27243 * 8 7 5 10 10 S 1.65604 * 125.65120 * 204.07235 * 9 8 7 11 11 O 1.42092 * 106.40464 * 156.15784 * 10 9 8 12 12 O 1.42097 * 106.39638 * 23.23480 * 10 9 8 13 13 C 1.76200 * 107.21833 * 269.69972 * 10 9 8 14 14 H 1.08007 * 120.00063 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00219 * 180.27548 * 13 10 9 16 16 N 1.31517 * 119.99758 * 359.71540 * 15 13 10 17 17 Si 1.86797 * 120.00405 * 179.72245 * 15 13 10 18 18 H 1.48501 * 109.46959 * 59.99445 * 17 15 13 19 19 H 1.48500 * 109.47332 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46875 * 299.99883 * 17 15 13 21 21 C 1.47026 * 108.70711 * 23.81173 * 9 8 7 22 22 H 1.08995 * 109.88498 * 118.57712 * 21 9 8 23 23 C 1.50692 * 109.88379 * 239.59428 * 21 9 8 24 24 C 1.38238 * 120.00315 * 38.27081 * 23 21 9 25 25 C 1.38229 * 120.00265 * 179.80842 * 24 23 21 26 26 C 1.38241 * 119.99991 * 0.41882 * 25 24 23 27 27 C 1.38237 * 119.99930 * 359.81099 * 26 25 24 28 28 C 1.38237 * 119.99849 * 218.53885 * 23 21 9 29 29 H 1.09003 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99653 * 1 2 3 31 31 H 1.09006 * 109.47222 * 59.99716 * 1 2 3 32 32 H 1.09000 * 111.00469 * 271.93913 * 7 5 3 33 33 H 1.08999 * 111.00621 * 35.75041 * 7 5 3 34 34 H 1.09000 * 110.38934 * 204.36421 * 8 7 5 35 35 H 1.08995 * 110.23642 * 82.10783 * 8 7 5 36 36 H 0.96994 * 120.00323 * 179.97438 * 16 15 13 37 37 H 1.07998 * 119.99516 * 359.97438 * 24 23 21 38 38 H 1.07996 * 120.00238 * 180.20830 * 25 24 23 39 39 H 1.07999 * 119.99775 * 179.78867 * 26 25 24 40 40 H 1.07998 * 120.00067 * 179.97438 * 27 26 25 41 41 H 1.07998 * 120.00243 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9913 0.5024 -0.6416 7 6 4.0421 2.6838 -0.4428 8 6 5.4201 2.7818 0.2532 9 7 5.2403 2.1030 1.5494 10 16 6.1460 2.3661 2.9106 11 8 5.3379 1.9753 4.0121 12 8 6.7018 3.6671 2.7773 13 6 7.4998 1.2394 2.8622 14 1 7.6016 0.5528 2.0347 15 6 8.4257 1.2299 3.8838 16 7 8.3015 2.0657 4.8916 17 14 9.8566 0.0301 3.8364 18 1 10.6691 0.2766 2.6180 19 1 10.7026 0.2207 5.0419 20 1 9.3360 -1.3604 3.8112 21 6 4.1196 1.1581 1.4354 22 1 4.4714 0.1423 1.6156 23 6 3.0465 1.5131 2.4320 24 6 2.7533 2.8393 2.6891 25 6 1.7662 3.1649 3.6003 26 6 1.0782 2.1644 4.2611 27 6 1.3747 0.8382 4.0076 28 6 2.3592 0.5125 3.0934 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 4.1449 2.7391 -1.5265 33 1 3.3667 3.4570 -0.0766 34 1 5.6948 3.8254 0.4064 35 1 6.1792 2.2719 -0.3400 36 1 8.9526 2.0589 5.6105 37 1 3.2936 3.6210 2.1758 38 1 1.5348 4.2010 3.7986 39 1 0.3094 2.4188 4.9756 40 1 0.8376 0.0565 4.5241 41 1 2.5909 -0.5236 2.8955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:03 Heat of formation + Delta-G solvation = -160.838465 kcal Electronic energy + Delta-G solvation = -29170.539449 eV Core-core repulsion = 25141.282210 eV Total energy + Delta-G solvation = -4029.257239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.01049 -40.25136 -38.71335 -37.38124 -37.30165 -36.09884 -35.18575 -32.83427 -32.27871 -31.71346 -29.48242 -28.26393 -28.23816 -24.82485 -23.67512 -23.10296 -22.59402 -20.97531 -20.66262 -19.28650 -18.77192 -18.35119 -17.83006 -17.41073 -17.22059 -16.98778 -16.43312 -16.18954 -15.91053 -15.67559 -15.53509 -14.72671 -14.46120 -14.31269 -14.23420 -14.01670 -14.00332 -13.88387 -13.53592 -13.30377 -12.99460 -12.92799 -12.75503 -12.59427 -12.48160 -12.42333 -12.32188 -12.23235 -12.16838 -11.88336 -11.69657 -11.64342 -11.41036 -11.23690 -10.97420 -9.96405 -9.75451 -9.52922 -8.74810 -7.49792 0.20215 0.47446 0.55790 1.21273 1.33826 1.36186 1.49184 1.77470 2.20706 2.57364 2.75918 2.98011 3.33167 3.55890 3.62950 3.85153 3.93656 4.03553 4.14203 4.18568 4.24952 4.32777 4.35538 4.37993 4.40558 4.48780 4.61790 4.65982 4.75472 4.77905 4.83787 4.91373 5.08061 5.10829 5.18449 5.22073 5.31543 5.44101 5.56033 5.61173 5.66368 5.80197 5.90033 6.16505 6.77071 6.79665 8.20029 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.004763 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.616326 B = 5876.878537 C = 6342.431040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.481 3.519 4 O -0.522 6.522 5 C -0.081 4.081 6 H 0.158 0.842 7 C -0.106 4.106 8 C 0.107 3.893 9 N -1.014 6.014 10 S 2.731 3.269 11 O -1.018 7.018 12 O -1.045 7.045 13 C -1.043 5.043 14 H 0.122 0.878 15 C 0.070 3.930 16 N -0.896 5.896 17 Si 0.990 3.010 18 H -0.248 1.248 19 H -0.265 1.265 20 H -0.247 1.247 21 C 0.202 3.798 22 H 0.101 0.899 23 C -0.114 4.114 24 C -0.108 4.108 25 C -0.141 4.141 26 C -0.124 4.124 27 C -0.126 4.126 28 C -0.112 4.112 29 H 0.131 0.869 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.298 0.702 37 H 0.097 0.903 38 H 0.128 0.872 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.091 -7.289 -11.377 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C 0.324 3.676 4 O -0.410 6.410 5 C -0.101 4.101 6 H 0.176 0.824 7 C -0.145 4.145 8 C -0.017 4.017 9 N -0.851 5.851 10 S 2.834 3.166 11 O -1.008 7.008 12 O -1.035 7.035 13 C -1.177 5.177 14 H 0.140 0.860 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.807 3.193 18 H -0.172 1.172 19 H -0.189 1.189 20 H -0.171 1.171 21 C 0.095 3.905 22 H 0.119 0.881 23 C -0.115 4.115 24 C -0.126 4.126 25 C -0.159 4.159 26 C -0.141 4.141 27 C -0.144 4.144 28 C -0.130 4.130 29 H 0.149 0.851 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.146 0.854 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.426 -6.221 -10.479 18.132 hybrid contribution 0.972 -0.192 0.342 1.048 sum -12.454 -6.414 -10.137 17.291 Atomic orbital electron populations 1.23479 0.75115 1.05476 1.02112 1.86484 1.24645 1.32400 1.83649 1.23256 0.91533 0.81543 0.71255 1.90641 1.67348 1.37146 1.45850 1.22263 0.87709 1.03076 0.97077 0.82423 1.22812 0.94803 0.93947 1.02898 1.22215 0.98708 0.97852 0.82969 1.58789 1.45057 1.53702 1.27578 0.99680 0.73252 0.73602 0.70039 1.93343 1.71272 1.84621 1.51592 1.93290 1.80223 1.43685 1.86332 1.31005 1.30408 1.39282 1.16974 0.86003 1.26054 1.00810 0.95933 0.91514 1.69996 1.37598 1.35181 1.09960 0.85174 0.76120 0.78418 0.79568 1.17155 1.18938 1.17091 1.20105 0.84169 0.93840 0.92375 0.88124 1.20267 0.97748 0.94144 0.99364 1.20902 0.97514 0.96019 0.98185 1.21347 0.96898 1.00448 0.97242 1.21431 1.00160 0.93007 0.99538 1.21422 0.98028 0.97059 0.97911 1.21240 0.96252 0.99310 0.96244 0.85051 0.93017 0.91717 0.85336 0.90851 0.91201 0.88664 0.89169 0.88481 0.85417 0.83570 0.83089 0.84223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.36 -7.99 10.56 -51.35 -0.54 -8.53 16 3 C 0.48 12.73 5.33 71.24 0.38 13.11 16 4 O -0.52 -16.39 14.85 21.94 0.33 -16.06 16 5 C -0.08 -2.01 3.38 -10.35 -0.04 -2.04 16 6 H 0.16 2.66 8.14 -2.39 -0.02 2.64 16 7 C -0.11 -2.61 6.23 31.91 0.20 -2.41 16 8 C 0.11 3.36 7.09 86.78 0.62 3.97 16 9 N -1.01 -40.92 2.65 -488.53 -1.29 -42.21 16 10 S 2.73 149.62 5.02 -56.49 -0.28 149.34 16 11 O -1.02 -60.93 15.77 -128.00 -2.02 -62.95 16 12 O -1.04 -64.20 17.34 -128.00 -2.22 -66.42 16 13 C -1.04 -57.61 9.75 67.73 0.66 -56.95 16 14 H 0.12 5.96 7.81 -2.91 -0.02 5.94 16 15 C 0.07 3.89 5.46 84.65 0.46 4.35 16 16 N -0.90 -54.18 13.19 21.45 0.28 -53.90 16 17 Si 0.99 41.01 29.54 68.60 2.03 43.03 16 18 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 19 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 21 C 0.20 6.84 3.23 44.60 0.14 6.98 16 22 H 0.10 3.18 8.03 -2.39 -0.02 3.16 16 23 C -0.11 -4.22 1.90 -19.87 -0.04 -4.25 16 24 C -0.11 -4.29 7.98 22.27 0.18 -4.11 16 25 C -0.14 -5.06 10.05 22.27 0.22 -4.84 16 26 C -0.12 -3.79 10.05 22.27 0.22 -3.57 16 27 C -0.13 -3.74 10.05 22.27 0.22 -3.52 16 28 C -0.11 -3.69 9.46 22.27 0.21 -3.48 16 29 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16 31 H 0.06 1.03 8.13 -2.38 -0.02 1.01 16 32 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 2.11 6.70 -2.39 -0.02 2.10 16 34 H 0.07 2.38 7.78 -2.39 -0.02 2.36 16 35 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.30 16.25 8.31 -92.71 -0.77 15.48 16 37 H 0.10 4.05 7.10 -2.91 -0.02 4.02 16 38 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 40 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.14 3.88 8.05 -2.91 -0.02 3.86 16 Total: -1.00 -83.99 357.53 1.96 -82.03 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 1.04 Total: 30.70 kcal Atomic # 6 Polarization: -59.68 SS G_CDS: 4.64 Total: -55.03 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -1.01 Total: -96.11 kcal Atomic # 8 Polarization: -149.51 SS G_CDS: -4.45 Total: -153.96 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 16 Polarization: 149.62 SS G_CDS: -0.28 Total: 149.34 kcal Total: -83.99 1.96 -82.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.811 kcal (2) G-P(sol) polarization free energy of solvation -83.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds