Wall clock time and date at job start Tue Mar 31 2020 22:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34714 * 117.00014 * 2 1 4 4 O 1.21467 * 120.00188 * 359.97438 * 3 2 1 5 5 C 1.47730 * 119.99481 * 180.02562 * 3 2 1 6 6 C 1.39628 * 120.14256 * 179.97438 * 5 3 2 7 7 C 1.37946 * 119.84748 * 180.02562 * 6 5 3 8 8 C 1.38375 * 120.14726 * 0.02562 * 7 6 5 9 9 C 1.50694 * 119.84881 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.87692 * 19.56005 * 9 8 7 11 11 C 1.54325 * 109.87930 * 258.54559 * 9 8 7 12 12 C 1.55157 * 102.94374 * 218.38825 * 11 9 8 13 13 C 1.54918 * 101.58155 * 35.49936 * 12 11 9 14 14 N 1.47015 * 109.88612 * 140.73761 * 9 8 7 15 15 S 1.65604 * 125.64701 * 298.31349 * 14 9 8 16 16 O 1.42109 * 106.40158 * 203.53938 * 15 14 9 17 17 O 1.42100 * 106.40066 * 336.45428 * 15 14 9 18 18 C 1.76196 * 107.21884 * 89.99684 * 15 14 9 19 19 H 1.08000 * 120.00196 * 0.02562 * 18 15 14 20 20 C 1.37878 * 119.99801 * 179.97438 * 18 15 14 21 21 N 1.31515 * 119.99950 * 179.97438 * 20 18 15 22 22 Si 1.86805 * 120.00105 * 0.02562 * 20 18 15 23 23 H 1.48495 * 109.47363 * 89.99653 * 22 20 18 24 24 H 1.48497 * 109.46849 * 209.99675 * 22 20 18 25 25 H 1.48493 * 109.46832 * 329.99316 * 22 20 18 26 26 C 1.38372 * 120.30200 * 0.23144 * 8 7 6 27 27 C 1.37946 * 120.14935 * 359.48830 * 26 8 7 28 28 H 1.08993 * 109.47477 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47302 * 299.99936 * 1 2 3 30 30 H 1.09004 * 109.47403 * 59.99901 * 1 2 3 31 31 H 1.07995 * 120.07994 * 0.04607 * 6 5 3 32 32 H 1.07997 * 119.92947 * 180.02562 * 7 6 5 33 33 H 1.08996 * 110.72124 * 100.02925 * 11 9 8 34 34 H 1.08993 * 110.72326 * 336.75117 * 11 9 8 35 35 H 1.09001 * 111.00846 * 153.57645 * 12 11 9 36 36 H 1.09000 * 111.00346 * 277.43176 * 12 11 9 37 37 H 1.08999 * 110.35942 * 81.82689 * 13 12 11 38 38 H 1.08996 * 110.36556 * 204.15522 * 13 12 11 39 39 H 0.96998 * 119.99973 * 180.02562 * 21 20 18 40 40 H 1.07996 * 119.92407 * 179.72070 * 26 8 7 41 41 H 1.07999 * 120.07376 * 180.25387 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2775 -0.0006 6 6 4.1760 2.5199 -0.0011 7 6 5.5539 2.5849 -0.0022 8 6 6.3044 1.4224 -0.0033 9 6 7.8093 1.5012 -0.0050 10 1 8.1293 2.4852 0.3380 11 6 8.3468 1.2411 -1.4281 12 6 9.6255 0.4016 -1.1685 13 6 9.1977 -0.4466 0.0552 14 7 8.3657 0.4583 0.8691 15 16 8.1024 0.3230 2.4985 16 8 9.1983 -0.4148 3.0222 17 8 7.7492 1.6208 2.9570 18 6 6.6745 -0.6866 2.7140 19 1 6.1579 -1.0824 1.8521 20 6 6.2173 -0.9721 3.9830 21 7 5.1512 -1.7252 4.1439 22 14 7.1112 -0.2881 5.4738 23 1 6.5362 1.0331 5.8328 24 1 6.9547 -1.2231 6.6168 25 1 8.5534 -0.1307 5.1570 26 6 5.6794 0.1879 -0.0081 27 6 4.3023 0.1085 -0.0012 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.5914 3.4280 -0.0004 32 1 6.0480 3.5452 -0.0022 33 1 8.5955 2.1793 -1.9238 34 1 7.6251 0.6730 -2.0150 35 1 9.8557 -0.2343 -2.0234 36 1 10.4712 1.0437 -0.9223 37 1 8.6158 -1.3102 -0.2667 38 1 10.0735 -0.7670 0.6195 39 1 4.8293 -1.9258 5.0367 40 1 6.2712 -0.7155 -0.0135 41 1 3.8158 -0.8557 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:19 Heat of formation + Delta-G solvation = -128.506046 kcal Electronic energy + Delta-G solvation = -28383.060263 eV Core-core repulsion = 24355.205062 eV Total energy + Delta-G solvation = -4027.855201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -40.38670 -39.35715 -37.43102 -36.21730 -35.66816 -34.45242 -33.02610 -31.93503 -30.81784 -30.39196 -28.53563 -27.18182 -26.36394 -23.79107 -22.39018 -21.79710 -21.12158 -20.27273 -18.72838 -17.80611 -17.54377 -17.00942 -16.74808 -16.19414 -16.09460 -15.25554 -14.97283 -14.45925 -14.39420 -14.08289 -13.50272 -13.48306 -13.38260 -13.35405 -13.16118 -12.93496 -12.72513 -12.55551 -12.17880 -12.07114 -11.88617 -11.44804 -11.30034 -11.07933 -11.01706 -10.89175 -10.71479 -10.70260 -10.64575 -10.54113 -10.42710 -10.32731 -9.85951 -9.20231 -9.17326 -8.62725 -8.57135 -8.22972 -6.78264 -5.31038 0.94487 1.75628 1.93943 2.74522 2.85293 3.06310 3.17521 3.26085 3.95503 3.99598 4.26960 4.57100 4.69271 4.79781 4.89013 4.97309 5.12371 5.16315 5.20594 5.23681 5.28811 5.41947 5.50291 5.53160 5.64687 5.70860 5.79622 5.84948 5.94608 5.96236 6.04262 6.11610 6.13445 6.32368 6.34041 6.39207 6.53653 6.60878 6.68975 6.92630 7.15763 7.20246 7.49681 7.89853 8.23155 8.72777 10.32805 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.005555 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.199371 B = 5039.321174 C = 6759.240459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.351 6.351 3 C 0.515 3.485 4 O -0.516 6.516 5 C -0.133 4.133 6 C -0.060 4.060 7 C -0.116 4.116 8 C -0.066 4.066 9 C 0.190 3.810 10 H 0.086 0.914 11 C -0.119 4.119 12 C -0.130 4.130 13 C 0.117 3.883 14 N -1.006 6.006 15 S 2.681 3.319 16 O -1.005 7.005 17 O -1.003 7.003 18 C -1.013 5.013 19 H 0.131 0.869 20 C 0.158 3.842 21 N -0.819 5.819 22 Si 0.794 3.206 23 H -0.247 1.247 24 H -0.255 1.255 25 H -0.222 1.222 26 C -0.093 4.093 27 C -0.049 4.049 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.279 0.721 40 H 0.136 0.864 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 2.957 -13.174 13.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.268 6.268 3 C 0.361 3.639 4 O -0.407 6.407 5 C -0.134 4.134 6 C -0.078 4.078 7 C -0.134 4.134 8 C -0.068 4.068 9 C 0.083 3.917 10 H 0.104 0.896 11 C -0.158 4.158 12 C -0.169 4.169 13 C -0.008 4.008 14 N -0.841 5.841 15 S 2.786 3.214 16 O -0.996 6.996 17 O -0.993 6.993 18 C -1.147 5.147 19 H 0.148 0.852 20 C -0.062 4.062 21 N -0.448 5.448 22 Si 0.614 3.386 23 H -0.171 1.171 24 H -0.179 1.179 25 H -0.144 1.144 26 C -0.111 4.111 27 C -0.067 4.067 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.153 0.847 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.350 3.533 -12.309 12.810 hybrid contribution -0.717 -0.220 0.848 1.132 sum -1.068 3.313 -11.461 11.978 Atomic orbital electron populations 1.23240 0.76430 1.03610 1.02339 1.86592 1.23202 1.32748 1.84222 1.21330 0.89338 0.81211 0.72015 1.90783 1.66976 1.36094 1.46807 1.19012 0.88447 0.95311 1.10645 1.21073 0.94411 0.96332 0.95970 1.20848 0.93025 0.98159 1.01413 1.20560 0.96024 0.93678 0.96520 1.20146 0.88125 0.92440 0.90946 0.89568 1.22696 0.97384 1.00873 0.94815 1.22791 0.97520 0.98668 0.97879 1.21944 0.94623 0.92529 0.91745 1.58823 1.61984 1.37580 1.25745 1.01263 0.76171 0.74774 0.69191 1.93458 1.56731 1.73723 1.75670 1.93406 1.85727 1.42579 1.77632 1.30616 1.32698 1.49503 1.01902 0.85163 1.24341 0.92942 0.90824 0.98079 1.69973 1.19898 1.30273 1.24614 0.87982 0.84152 0.81613 0.84819 1.17117 1.17904 1.14426 1.21002 0.94142 0.97814 0.98176 1.21371 0.93853 0.97719 0.93792 0.88093 0.91909 0.92090 0.84912 0.85114 0.90217 0.90287 0.90206 0.90771 0.91788 0.90100 0.91020 0.84675 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.35 -5.48 9.82 -40.53 -0.40 -5.88 16 3 C 0.51 8.89 7.90 34.61 0.27 9.16 16 4 O -0.52 -9.54 16.14 -19.24 -0.31 -9.85 16 5 C -0.13 -2.31 5.87 -104.98 -0.62 -2.93 16 6 C -0.06 -0.97 9.60 -39.17 -0.38 -1.34 16 7 C -0.12 -1.81 9.65 -39.64 -0.38 -2.20 16 8 C -0.07 -1.11 4.58 -104.52 -0.48 -1.58 16 9 C 0.19 2.97 3.03 -68.11 -0.21 2.76 16 10 H 0.09 1.31 8.01 -51.93 -0.42 0.90 16 11 C -0.12 -1.32 6.46 -24.90 -0.16 -1.48 16 12 C -0.13 -1.39 7.09 -24.58 -0.17 -1.57 16 13 C 0.12 1.74 7.11 -2.52 -0.02 1.72 16 14 N -1.01 -18.83 2.64 -105.64 -0.28 -19.11 16 15 S 2.68 66.62 4.12 -107.50 -0.44 66.18 16 16 O -1.01 -26.87 15.34 -57.17 -0.88 -27.75 16 17 O -1.00 -26.80 16.42 -57.17 -0.94 -27.74 16 18 C -1.01 -27.19 9.41 30.60 0.29 -26.90 16 19 H 0.13 3.39 5.26 -52.49 -0.28 3.11 16 20 C 0.16 4.45 5.47 -17.82 -0.10 4.35 16 21 N -0.82 -23.08 13.96 55.43 0.77 -22.31 16 22 Si 0.79 20.62 26.54 -169.99 -4.51 16.11 16 23 H -0.25 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.22 -5.89 5.61 56.52 0.32 -5.58 16 26 C -0.09 -1.63 6.71 -39.64 -0.27 -1.90 16 27 C -0.05 -0.86 9.62 -39.17 -0.38 -1.23 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.13 1.95 7.65 -52.49 -0.40 1.55 16 32 H 0.13 1.68 8.03 -52.49 -0.42 1.26 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.82 7.78 -51.93 -0.40 0.42 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.23 7.78 -51.93 -0.40 0.83 16 39 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.14 2.32 6.76 -52.49 -0.35 1.96 16 41 H 0.14 2.24 7.61 -52.49 -0.40 1.84 16 LS Contribution 352.02 15.07 5.30 5.30 Total: -1.00 -34.39 352.02 -8.46 -42.84 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.26 Total: 3.82 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -1.52 Total: -21.62 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.49 Total: -41.42 kcal Atomic # 8 Polarization: -68.69 SS G_CDS: -2.52 Total: -71.22 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.51 Total: 16.11 kcal Atomic # 16 Polarization: 66.62 SS G_CDS: -0.44 Total: 66.18 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.39 -8.46 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.661 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds