Wall clock time and date at job start Tue Mar 31 2020 22:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34714 * 117.00014 * 2 1 4 4 O 1.21467 * 120.00188 * 359.97438 * 3 2 1 5 5 C 1.47730 * 119.99481 * 180.02562 * 3 2 1 6 6 C 1.39628 * 120.14256 * 179.97438 * 5 3 2 7 7 C 1.37946 * 119.84748 * 180.02562 * 6 5 3 8 8 C 1.38375 * 120.14726 * 0.02562 * 7 6 5 9 9 C 1.50694 * 119.84881 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.87692 * 19.56005 * 9 8 7 11 11 C 1.54325 * 109.87930 * 258.54559 * 9 8 7 12 12 C 1.55157 * 102.94374 * 218.38825 * 11 9 8 13 13 C 1.54918 * 101.58155 * 35.49936 * 12 11 9 14 14 N 1.47015 * 109.88612 * 140.73761 * 9 8 7 15 15 S 1.65604 * 125.64701 * 298.31349 * 14 9 8 16 16 O 1.42109 * 106.40158 * 203.53938 * 15 14 9 17 17 O 1.42100 * 106.40066 * 336.45428 * 15 14 9 18 18 C 1.76196 * 107.21884 * 89.99684 * 15 14 9 19 19 H 1.08000 * 120.00196 * 0.02562 * 18 15 14 20 20 C 1.37878 * 119.99801 * 179.97438 * 18 15 14 21 21 N 1.31515 * 119.99950 * 179.97438 * 20 18 15 22 22 Si 1.86805 * 120.00105 * 0.02562 * 20 18 15 23 23 H 1.48495 * 109.47363 * 89.99653 * 22 20 18 24 24 H 1.48497 * 109.46849 * 209.99675 * 22 20 18 25 25 H 1.48493 * 109.46832 * 329.99316 * 22 20 18 26 26 C 1.38372 * 120.30200 * 0.23144 * 8 7 6 27 27 C 1.37946 * 120.14935 * 359.48830 * 26 8 7 28 28 H 1.08993 * 109.47477 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47302 * 299.99936 * 1 2 3 30 30 H 1.09004 * 109.47403 * 59.99901 * 1 2 3 31 31 H 1.07995 * 120.07994 * 0.04607 * 6 5 3 32 32 H 1.07997 * 119.92947 * 180.02562 * 7 6 5 33 33 H 1.08996 * 110.72124 * 100.02925 * 11 9 8 34 34 H 1.08993 * 110.72326 * 336.75117 * 11 9 8 35 35 H 1.09001 * 111.00846 * 153.57645 * 12 11 9 36 36 H 1.09000 * 111.00346 * 277.43176 * 12 11 9 37 37 H 1.08999 * 110.35942 * 81.82689 * 13 12 11 38 38 H 1.08996 * 110.36556 * 204.15522 * 13 12 11 39 39 H 0.96998 * 119.99973 * 180.02562 * 21 20 18 40 40 H 1.07996 * 119.92407 * 179.72070 * 26 8 7 41 41 H 1.07999 * 120.07376 * 180.25387 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2775 -0.0006 6 6 4.1760 2.5199 -0.0011 7 6 5.5539 2.5849 -0.0022 8 6 6.3044 1.4224 -0.0033 9 6 7.8093 1.5012 -0.0050 10 1 8.1293 2.4852 0.3380 11 6 8.3468 1.2411 -1.4281 12 6 9.6255 0.4016 -1.1685 13 6 9.1977 -0.4466 0.0552 14 7 8.3657 0.4583 0.8691 15 16 8.1024 0.3230 2.4985 16 8 9.1983 -0.4148 3.0222 17 8 7.7492 1.6208 2.9570 18 6 6.6745 -0.6866 2.7140 19 1 6.1579 -1.0824 1.8521 20 6 6.2173 -0.9721 3.9830 21 7 5.1512 -1.7252 4.1439 22 14 7.1112 -0.2881 5.4738 23 1 6.5362 1.0331 5.8328 24 1 6.9547 -1.2231 6.6168 25 1 8.5534 -0.1307 5.1570 26 6 5.6794 0.1879 -0.0081 27 6 4.3023 0.1085 -0.0012 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.5914 3.4280 -0.0004 32 1 6.0480 3.5452 -0.0022 33 1 8.5955 2.1793 -1.9238 34 1 7.6251 0.6730 -2.0150 35 1 9.8557 -0.2343 -2.0234 36 1 10.4712 1.0437 -0.9223 37 1 8.6158 -1.3102 -0.2667 38 1 10.0735 -0.7670 0.6195 39 1 4.8293 -1.9258 5.0367 40 1 6.2712 -0.7155 -0.0135 41 1 3.8158 -0.8557 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:16 Heat of formation + Delta-G solvation = -151.794738 kcal Electronic energy + Delta-G solvation = -28384.070136 eV Core-core repulsion = 24355.205062 eV Total energy + Delta-G solvation = -4028.865074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66445 -40.59003 -38.64149 -37.70126 -37.48500 -36.49051 -35.13963 -33.17893 -32.07205 -31.62502 -29.66671 -28.48209 -28.19929 -25.01174 -23.68657 -23.08616 -22.15729 -21.56967 -20.57285 -19.30125 -19.12114 -18.60725 -18.24903 -17.41107 -17.39555 -17.04106 -16.54710 -15.83357 -15.65425 -15.60284 -15.40696 -15.02436 -14.79055 -14.59646 -14.48421 -14.32225 -14.06418 -13.81337 -13.51057 -13.31852 -13.26790 -13.07328 -12.97600 -12.73587 -12.69029 -12.57820 -12.16733 -12.00815 -11.89854 -11.85522 -11.79072 -11.65911 -11.45984 -11.32278 -11.11630 -10.01679 -9.87933 -9.63997 -8.91044 -7.42641 -0.37482 0.09191 0.46292 1.00932 1.09794 1.17270 1.42907 1.68887 1.87551 2.44902 2.49618 2.81609 3.35623 3.56485 3.65795 3.78053 3.84541 3.92171 4.02813 4.25892 4.26652 4.29720 4.30120 4.37697 4.45148 4.58864 4.65261 4.71368 4.79382 4.89089 5.01620 5.07648 5.10643 5.14601 5.16603 5.23933 5.31295 5.38677 5.43464 5.45649 5.64473 5.77003 5.90323 6.14448 6.61094 6.61265 8.24093 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.005555 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.199371 B = 5039.321174 C = 6759.240459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.514 3.486 4 O -0.535 6.535 5 C -0.150 4.150 6 C -0.063 4.063 7 C -0.117 4.117 8 C -0.074 4.074 9 C 0.179 3.821 10 H 0.092 0.908 11 C -0.107 4.107 12 C -0.115 4.115 13 C 0.100 3.900 14 N -1.007 6.007 15 S 2.697 3.303 16 O -1.031 7.031 17 O -1.027 7.027 18 C -1.026 5.026 19 H 0.129 0.871 20 C 0.119 3.881 21 N -0.845 5.845 22 Si 0.808 3.192 23 H -0.248 1.248 24 H -0.222 1.222 25 H -0.233 1.233 26 C -0.106 4.106 27 C -0.061 4.061 28 H 0.132 0.868 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.161 0.839 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.287 0.713 40 H 0.131 0.869 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 3.667 -14.853 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C 0.361 3.639 4 O -0.427 6.427 5 C -0.151 4.151 6 C -0.081 4.081 7 C -0.135 4.135 8 C -0.076 4.076 9 C 0.073 3.927 10 H 0.110 0.890 11 C -0.146 4.146 12 C -0.154 4.154 13 C -0.024 4.024 14 N -0.845 5.845 15 S 2.801 3.199 16 O -1.021 7.021 17 O -1.018 7.018 18 C -1.159 5.159 19 H 0.147 0.853 20 C -0.098 4.098 21 N -0.475 5.475 22 Si 0.626 3.374 23 H -0.171 1.171 24 H -0.144 1.144 25 H -0.156 1.156 26 C -0.125 4.125 27 C -0.079 4.079 28 H 0.150 0.850 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.164 0.836 32 H 0.178 0.822 33 H 0.131 0.869 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.149 0.851 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.439 4.209 -13.965 14.592 hybrid contribution -1.002 -0.467 1.269 1.683 sum -0.563 3.742 -12.696 13.248 Atomic orbital electron populations 1.23605 0.74176 1.05879 1.02768 1.86578 1.25504 1.31935 1.83736 1.21372 0.89412 0.81446 0.71633 1.90758 1.67336 1.36639 1.47929 1.19217 0.88802 0.95822 1.11261 1.21327 0.94982 0.96410 0.95379 1.21213 0.92835 0.99182 1.00287 1.20816 0.96983 0.93653 0.96149 1.20577 0.87374 0.91689 0.93098 0.89027 1.22739 0.97318 1.02746 0.91805 1.22805 0.97488 0.98411 0.96694 1.22345 0.93924 0.93228 0.92916 1.58368 1.62550 1.39244 1.24356 1.00450 0.74966 0.73671 0.70858 1.93417 1.56881 1.74213 1.77620 1.93363 1.85896 1.43026 1.79478 1.31106 1.33647 1.49410 1.01758 0.85327 1.24920 0.93601 0.91341 0.99918 1.69993 1.20682 1.31243 1.25579 0.87755 0.82827 0.82154 0.84638 1.17137 1.14415 1.15616 1.21047 0.94141 0.98248 0.99021 1.21436 0.94147 0.97944 0.94401 0.84979 0.92220 0.90956 0.83642 0.82164 0.86926 0.89472 0.86843 0.89774 0.90979 0.91033 0.90235 0.85082 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.82 16 2 O -0.36 -11.25 9.82 -56.24 -0.55 -11.80 16 3 C 0.51 17.83 7.90 70.33 0.56 18.39 16 4 O -0.53 -19.71 16.14 19.94 0.32 -19.38 16 5 C -0.15 -5.22 5.87 -20.10 -0.12 -5.34 16 6 C -0.06 -1.99 9.60 22.54 0.22 -1.77 16 7 C -0.12 -3.46 9.65 22.23 0.21 -3.25 16 8 C -0.07 -2.39 4.58 -19.80 -0.09 -2.48 16 9 C 0.18 5.16 3.03 44.59 0.14 5.30 16 10 H 0.09 2.55 8.01 -2.38 -0.02 2.53 16 11 C -0.11 -1.95 6.46 31.78 0.21 -1.74 16 12 C -0.12 -2.01 7.09 31.99 0.23 -1.78 16 13 C 0.10 2.79 7.11 86.86 0.62 3.41 16 14 N -1.01 -36.48 2.64 -488.13 -1.29 -37.77 16 15 S 2.70 133.94 4.12 -56.49 -0.23 133.71 16 16 O -1.03 -55.40 15.34 -128.00 -1.96 -57.37 16 17 O -1.03 -54.85 16.42 -128.00 -2.10 -56.95 16 18 C -1.03 -55.79 9.41 67.73 0.64 -55.15 16 19 H 0.13 6.85 5.26 -2.91 -0.02 6.84 16 20 C 0.12 6.78 5.47 84.65 0.46 7.25 16 21 N -0.84 -48.10 13.96 21.45 0.30 -47.80 16 22 Si 0.81 41.53 26.54 68.60 1.82 43.35 16 23 H -0.25 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.22 -10.12 7.11 99.48 0.71 -9.42 16 25 H -0.23 -12.41 5.61 99.48 0.56 -11.85 16 26 C -0.11 -3.70 6.71 22.23 0.15 -3.56 16 27 C -0.06 -2.16 9.62 22.53 0.22 -1.94 16 28 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.15 4.13 7.65 -2.91 -0.02 4.11 16 32 H 0.16 3.68 8.03 -2.91 -0.02 3.65 16 33 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.48 7.78 -2.39 -0.02 1.46 16 35 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 2.11 7.78 -2.39 -0.02 2.09 16 39 H 0.29 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.13 4.55 6.76 -2.91 -0.02 4.53 16 41 H 0.14 4.63 7.61 -2.91 -0.02 4.60 16 Total: -1.00 -75.30 352.02 1.83 -73.46 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.91 Total: 21.40 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 4.63 Total: -40.85 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -0.99 Total: -85.57 kcal Atomic # 8 Polarization: -141.21 SS G_CDS: -4.30 Total: -145.51 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.82 Total: 43.35 kcal Atomic # 16 Polarization: 133.94 SS G_CDS: -0.23 Total: 133.71 kcal Total: -75.30 1.83 -73.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.330 kcal (2) G-P(sol) polarization free energy of solvation -75.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds