Wall clock time and date at job start Tue Mar 31 2020 23:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00091 * 2 1 4 4 H 1.48497 * 109.47557 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46803 * 300.00029 * 3 2 1 6 6 H 1.48502 * 109.47323 * 59.99476 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99860 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99821 * 359.72685 * 7 2 1 10 10 N 1.46898 * 109.46997 * 180.27788 * 9 7 2 11 11 C 1.47481 * 110.99759 * 265.96786 * 10 9 7 12 12 C 1.53511 * 87.93399 * 221.29848 * 11 10 9 13 13 O 1.42902 * 114.17019 * 272.37625 * 12 11 10 14 14 C 1.35980 * 117.00212 * 250.62020 * 13 12 11 15 15 C 1.38718 * 120.01551 * 185.73670 * 14 13 12 16 16 C 1.38071 * 119.97187 * 180.02562 * 15 14 13 17 17 C 1.50699 * 119.96725 * 179.97438 * 16 15 14 18 18 Cl 1.80299 * 109.46883 * 90.00111 * 17 16 15 19 19 C 1.38826 * 120.06528 * 359.95519 * 16 15 14 20 20 C 1.38570 * 119.95978 * 359.96642 * 19 16 15 21 21 C 1.38250 * 119.96674 * 359.83727 * 20 19 16 22 22 C 1.50799 * 120.42690 * 180.18660 * 20 19 16 23 23 O 1.43070 * 109.31619 * 343.94721 * 22 20 19 24 24 C 1.43273 * 113.02647 * 48.59430 * 23 22 20 25 25 O 1.36076 * 119.51534 * 179.83375 * 19 16 15 26 26 C 1.47480 * 111.00094 * 169.99989 * 10 9 7 27 27 H 0.96996 * 119.99726 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46585 * 300.26982 * 9 7 2 29 29 H 1.08990 * 109.47212 * 60.27269 * 9 7 2 30 30 H 1.09003 * 113.47407 * 336.06474 * 11 10 9 31 31 H 1.09001 * 113.47800 * 106.53245 * 11 10 9 32 32 H 1.09004 * 114.34509 * 139.68336 * 12 11 10 33 33 H 1.08001 * 120.01321 * 0.02562 * 15 14 13 34 34 H 1.08994 * 109.47054 * 210.00169 * 17 16 15 35 35 H 1.08996 * 109.46999 * 329.99938 * 17 16 15 36 36 H 1.08004 * 119.97064 * 180.17377 * 21 20 19 37 37 H 1.08999 * 109.49714 * 223.99086 * 22 20 19 38 38 H 1.09000 * 109.51648 * 103.91091 * 22 20 19 39 39 H 1.09002 * 109.61721 * 174.78288 * 24 23 22 40 40 H 1.09001 * 109.76093 * 54.33107 * 24 23 22 41 41 H 1.08999 * 113.47639 * 253.46575 * 26 10 9 42 42 H 1.09005 * 113.47701 * 23.92929 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0073 10 7 2.2057 -3.6156 0.0133 11 6 2.4757 -4.0874 -1.3577 12 6 2.4192 -5.5224 -0.8155 13 8 3.6679 -6.0106 -0.3208 14 6 4.2876 -6.9744 -1.0529 15 6 5.4406 -7.5774 -0.5719 16 6 6.0694 -8.5556 -1.3162 17 6 7.3222 -9.2102 -0.7938 18 17 6.8803 -10.6606 0.1819 19 6 5.5486 -8.9369 -2.5453 20 6 4.3960 -8.3356 -3.0250 21 6 3.7642 -7.3591 -2.2777 22 6 3.8187 -8.7447 -4.3568 23 8 4.8041 -9.4720 -5.0963 24 6 5.4307 -10.5064 -4.3282 25 8 6.1793 -9.8997 -3.2711 26 6 1.5186 -4.8972 0.2591 27 1 -0.4849 0.8400 -0.0004 28 1 0.6245 -2.5522 0.8977 29 1 0.6245 -2.5615 -0.8822 30 1 1.6757 -3.8573 -2.0615 31 1 3.4599 -3.8020 -1.7293 32 1 1.9089 -6.2300 -1.4690 33 1 5.8461 -7.2819 0.3845 34 1 7.9502 -9.5134 -1.6315 35 1 7.8675 -8.5037 -0.1681 36 1 2.8642 -6.8924 -2.6503 37 1 3.5275 -7.8553 -4.9156 38 1 2.9448 -9.3761 -4.1964 39 1 6.1004 -11.0821 -4.9672 40 1 4.6707 -11.1647 -3.9073 41 1 1.6917 -5.2982 1.2577 42 1 0.4632 -4.8833 -0.0132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206484328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:31 Heat of formation + Delta-G solvation = -57.886042 kcal Electronic energy + Delta-G solvation = -26625.103433 eV Core-core repulsion = 22598.266840 eV Total energy + Delta-G solvation = -4026.836594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.39569 -40.21177 -38.57992 -37.14560 -36.33300 -35.96164 -33.01948 -32.89868 -30.59523 -29.23288 -27.29728 -26.85225 -26.08345 -25.53152 -25.25675 -22.45906 -21.52573 -21.23445 -19.51273 -18.86276 -17.86659 -17.36920 -16.72202 -16.38167 -15.84458 -15.60398 -15.27858 -15.07239 -14.93960 -14.70042 -14.55445 -14.15359 -14.04572 -13.75897 -13.70362 -13.41138 -13.14687 -13.04091 -12.35990 -12.29677 -12.04669 -11.93407 -11.54201 -11.25442 -11.07015 -10.86505 -10.80768 -10.60371 -10.56728 -10.41786 -10.36859 -10.00859 -9.72039 -9.29471 -9.12124 -8.47689 -7.95051 -7.90060 -6.07604 -4.08586 0.69802 1.09750 2.20368 2.79942 3.08584 3.18523 3.29058 3.36500 3.42754 3.45442 4.05509 4.18647 4.37676 4.39460 4.58811 4.60713 4.66858 4.78647 4.82115 4.86382 4.87290 5.03271 5.09001 5.18380 5.25056 5.28063 5.40622 5.65466 5.74602 5.80665 5.88707 5.99141 6.05491 6.08790 6.17759 6.23979 6.36911 6.54322 6.94415 7.07791 7.46162 7.59269 7.80940 8.04442 8.40279 8.99634 9.55975 11.03570 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016558 B = 0.002358 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.661623 B =11872.970406 C =12663.116145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.156 3.844 10 N -0.455 5.455 11 C -0.006 4.006 12 C 0.044 3.956 13 O -0.272 6.272 14 C 0.117 3.883 15 C -0.098 4.098 16 C -0.094 4.094 17 C 0.021 3.979 18 Cl -0.179 7.179 19 C 0.109 3.891 20 C -0.162 4.162 21 C -0.159 4.159 22 C 0.102 3.898 23 O -0.385 6.385 24 C 0.224 3.776 25 O -0.328 6.328 26 C 0.000 4.000 27 H 0.261 0.739 28 H 0.031 0.969 29 H 0.004 0.996 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.881 -23.988 -7.786 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.029 3.971 10 N -0.178 5.178 11 C -0.136 4.136 12 C -0.013 4.013 13 O -0.184 6.184 14 C 0.071 3.929 15 C -0.117 4.117 16 C -0.095 4.095 17 C -0.041 4.041 18 Cl -0.152 7.152 19 C 0.064 3.936 20 C -0.164 4.164 21 C -0.178 4.178 22 C 0.026 3.974 23 O -0.305 6.305 24 C 0.111 3.889 25 O -0.244 6.244 26 C -0.129 4.129 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.022 0.978 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.161 0.839 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.158 0.842 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.158 0.842 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.523 -23.648 -7.254 26.881 hybrid contribution -0.910 0.802 -0.507 1.314 sum 9.614 -22.846 -7.761 25.973 Atomic orbital electron populations 1.69959 1.06080 1.26765 1.51265 1.25009 0.94902 0.99452 0.95385 0.86417 0.80171 0.83204 0.77523 1.19576 1.21075 1.20948 1.21131 0.93688 0.89669 1.49714 0.91752 1.20315 0.90697 0.89322 0.96717 1.69103 1.33347 1.01413 1.13956 1.24258 1.02917 0.91831 0.94555 1.23740 0.83887 0.95319 0.98391 1.86231 1.34510 1.50254 1.47434 1.18844 0.93293 0.90017 0.90709 1.20171 0.94568 0.96283 1.00694 1.18825 0.98910 0.99422 0.92386 1.22945 0.94923 0.88451 0.97786 1.98730 1.94696 1.46621 1.75174 1.18024 0.92920 0.91487 0.91121 1.20012 0.97680 1.00168 0.98506 1.20958 1.02067 0.99744 0.95029 1.21571 0.89905 0.97112 0.88812 1.88289 1.54837 1.49059 1.38287 1.24416 0.93043 0.87178 0.84282 1.86218 1.42148 1.50937 1.45113 1.24008 0.96212 0.93207 0.99477 0.92942 0.95134 0.97829 0.90554 0.89898 0.89759 0.83865 0.87452 0.87696 0.84224 0.86508 0.90760 0.84173 0.92054 0.89610 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.50 -14.33 9.39 -34.44 -0.32 -14.66 16 8 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.16 3.99 4.57 -4.98 -0.02 3.97 16 10 N -0.46 -9.81 6.32 -246.12 -1.55 -11.37 16 11 C -0.01 -0.11 7.55 -7.55 -0.06 -0.16 16 12 C 0.04 0.64 4.07 -26.20 -0.11 0.54 16 13 O -0.27 -4.22 10.19 -19.68 -0.20 -4.42 16 14 C 0.12 1.54 6.68 -39.26 -0.26 1.28 16 15 C -0.10 -1.16 9.63 -39.47 -0.38 -1.54 16 16 C -0.09 -1.02 5.27 -104.47 -0.55 -1.57 16 17 C 0.02 0.19 6.55 36.00 0.24 0.42 16 18 Cl -0.18 -1.79 29.13 -51.86 -1.51 -3.30 16 19 C 0.11 1.22 6.53 -39.24 -0.26 0.97 16 20 C -0.16 -1.74 5.82 -104.45 -0.61 -2.35 16 21 C -0.16 -1.81 8.70 -39.43 -0.34 -2.16 16 22 C 0.10 0.87 6.87 36.05 0.25 1.11 16 23 O -0.39 -3.63 10.97 -59.11 -0.65 -4.28 16 24 C 0.22 1.69 7.94 101.05 0.80 2.49 16 25 O -0.33 -3.32 9.48 -43.87 -0.42 -3.74 16 26 C 0.00 0.01 7.52 -7.55 -0.06 -0.05 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 28 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 29 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 30 H 0.08 1.31 7.42 -51.93 -0.39 0.93 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.08 0.98 5.89 -51.93 -0.31 0.68 16 33 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.11 0.85 7.50 -51.93 -0.39 0.46 16 35 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.14 1.38 5.87 -52.48 -0.31 1.07 16 37 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 41 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.08 1.23 7.91 -51.93 -0.41 0.82 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -32.79 363.84 -10.43 -43.22 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -5.52 Total: -2.18 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -1.78 Total: -10.29 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.82 Total: -37.25 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -1.26 Total: -12.44 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -1.51 Total: -3.30 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.79 -10.43 -43.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206484328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.669 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds