Wall clock time and date at job start Tue Mar 31 2020 22:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45202 * 109.47049 * 2 1 4 4 C 1.34230 * 116.99827 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00213 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99734 * 180.02562 * 4 3 2 7 7 C 1.53004 * 109.47139 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.46743 * 304.99768 * 7 6 4 9 9 C 1.50696 * 109.47232 * 185.00282 * 7 6 4 10 10 H 1.08004 * 119.99807 * 325.35042 * 9 7 6 11 11 C 1.37874 * 120.00113 * 145.35620 * 9 7 6 12 12 N 1.31515 * 120.00175 * 359.85663 * 11 9 7 13 13 Si 1.86806 * 119.99989 * 179.85295 * 11 9 7 14 14 H 1.48501 * 109.46824 * 59.99868 * 13 11 9 15 15 H 1.48501 * 109.47178 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47184 * 300.00220 * 13 11 9 17 17 N 1.46494 * 109.47291 * 64.99579 * 7 6 4 18 18 C 1.46167 * 127.49881 * 53.62975 * 17 7 6 19 19 C 1.50098 * 114.55696 * 179.97438 * 18 17 7 20 20 C 1.39474 * 128.71248 * 180.02562 * 19 18 17 21 21 C 1.37778 * 120.66396 * 179.97438 * 20 19 18 22 22 C 1.38259 * 120.54522 * 359.97438 * 21 20 19 23 23 C 1.38360 * 119.28266 * 0.02562 * 22 21 20 24 24 C 1.37639 * 119.88088 * 359.97438 * 23 22 21 25 25 S 1.66936 * 127.50319 * 233.63163 * 17 7 6 26 26 O 1.42099 * 107.33718 * 67.71533 * 25 17 7 27 27 O 1.42105 * 107.47941 * 292.33321 * 25 17 7 28 28 H 1.09006 * 109.47348 * 300.00117 * 1 2 3 29 29 H 1.09002 * 109.47511 * 59.99692 * 1 2 3 30 30 H 1.09002 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47017 * 240.00558 * 2 1 3 32 32 H 1.09000 * 109.47255 * 119.99831 * 2 1 3 33 33 H 1.08999 * 109.47725 * 59.99982 * 6 4 3 34 34 H 1.09003 * 109.47309 * 299.99679 * 6 4 3 35 35 H 0.97001 * 120.00137 * 179.97438 * 12 11 9 36 36 H 1.08997 * 108.47872 * 58.66803 * 18 17 7 37 37 H 1.08999 * 108.47682 * 301.33553 * 18 17 7 38 38 H 1.07995 * 119.66671 * 359.96541 * 20 19 18 39 39 H 1.07994 * 119.73111 * 179.70488 * 21 20 19 40 40 H 1.08001 * 120.35832 * 179.97438 * 22 21 20 41 41 H 1.08006 * 120.06136 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9374 0.0000 7 6 5.4486 2.8574 -0.0014 8 1 5.7813 2.2491 0.8397 9 6 6.0244 4.2444 0.1230 10 1 5.5216 5.0812 -0.3389 11 6 7.1931 4.4451 0.8264 12 7 7.8039 3.4265 1.3912 13 14 7.9090 6.1640 0.9772 14 1 6.9276 7.0515 1.6512 15 1 9.1596 6.1110 1.7762 16 1 8.2092 6.6957 -0.3765 17 7 5.9046 2.2498 -1.2540 18 6 5.5728 2.6634 -2.6161 19 6 6.2052 1.8302 -3.6926 20 6 6.0919 1.9609 -5.0765 21 6 6.7523 1.0950 -5.9205 22 6 7.5402 0.0802 -5.4098 23 6 7.6598 -0.0589 -4.0384 24 6 6.9974 0.8096 -3.2008 25 16 6.9162 0.9344 -1.4363 26 8 6.2159 -0.2073 -0.9617 27 8 8.2054 1.3210 -0.9805 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 3.5852 3.4691 0.8904 34 1 3.5843 3.4701 -0.8895 35 1 8.6263 3.5677 1.8858 36 1 5.8893 3.6978 -2.7498 37 1 4.4903 2.6201 -2.7362 38 1 5.4804 2.7488 -5.4908 39 1 6.6501 1.2070 -6.9897 40 1 8.0562 -0.5972 -6.0741 41 1 8.2723 -0.8469 -3.6258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250378321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:40 Heat of formation + Delta-G solvation = -136.188295 kcal Electronic energy + Delta-G solvation = -28571.059546 eV Core-core repulsion = 24542.871219 eV Total energy + Delta-G solvation = -4028.188328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.31988 -40.55679 -38.14422 -37.76788 -37.07424 -36.47207 -35.07305 -33.40847 -32.55053 -32.04571 -30.90587 -28.06074 -26.66123 -24.79963 -24.17969 -23.08367 -22.70823 -21.30610 -20.01167 -19.05871 -18.23057 -18.18421 -17.97896 -17.49781 -16.87754 -16.85893 -16.67794 -16.25628 -15.96403 -15.47742 -15.24603 -15.11007 -14.86547 -14.40909 -14.29366 -14.16106 -13.69573 -13.57468 -13.52696 -13.27277 -12.90481 -12.81644 -12.74332 -12.70070 -12.63233 -12.56908 -12.41045 -12.39116 -12.06749 -11.84481 -11.43061 -11.40429 -11.18085 -11.08435 -10.69015 -10.35886 -10.00827 -9.37633 -8.16711 -6.34630 -0.35430 -0.16152 0.21818 1.46195 1.47842 1.49238 1.58097 1.89074 2.03298 2.44309 2.50610 2.76586 2.97321 3.27575 3.72436 3.98738 4.03698 4.04523 4.17037 4.20201 4.26132 4.29206 4.39885 4.41636 4.44582 4.50945 4.60653 4.71536 4.87459 4.87844 4.93688 4.96136 5.01690 5.09599 5.19287 5.23860 5.33407 5.52957 5.63497 5.71426 5.87153 6.11801 6.27924 6.81488 7.03730 7.36723 8.87468 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.007275 B = 0.007090 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3847.627661 B = 3948.108900 C = 6515.610476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.050 3.950 3 O -0.364 6.364 4 C 0.438 3.562 5 O -0.510 6.510 6 C -0.104 4.104 7 C 0.308 3.692 8 H 0.036 0.964 9 C -0.522 4.522 10 H 0.088 0.912 11 C 0.021 3.979 12 N -0.897 5.897 13 Si 0.964 3.036 14 H -0.253 1.253 15 H -0.297 1.297 16 H -0.268 1.268 17 N -0.955 5.955 18 C 0.103 3.897 19 C -0.052 4.052 20 C -0.109 4.109 21 C -0.064 4.064 22 C -0.133 4.133 23 C -0.030 4.030 24 C -0.676 4.676 25 S 2.627 3.373 26 O -0.993 6.993 27 O -1.001 7.001 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.266 0.734 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.169 0.831 39 H 0.181 0.819 40 H 0.172 0.828 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 -1.408 -14.419 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 O -0.282 6.282 4 C 0.281 3.719 5 O -0.397 6.397 6 C -0.143 4.143 7 C 0.209 3.791 8 H 0.054 0.946 9 C -0.564 4.564 10 H 0.106 0.894 11 C -0.184 4.184 12 N -0.532 5.532 13 Si 0.789 3.211 14 H -0.177 1.177 15 H -0.223 1.223 16 H -0.193 1.193 17 N -0.801 5.801 18 C -0.023 4.023 19 C -0.054 4.054 20 C -0.128 4.128 21 C -0.081 4.081 22 C -0.152 4.152 23 C -0.049 4.049 24 C -0.765 4.765 25 S 2.726 3.274 26 O -0.982 6.982 27 O -0.990 6.990 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.187 0.813 39 H 0.198 0.802 40 H 0.190 0.810 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.122 -2.365 -13.481 17.023 hybrid contribution 0.966 0.311 0.140 1.024 sum -9.156 -2.054 -13.341 16.311 Atomic orbital electron populations 1.21782 0.89674 1.04214 1.03888 1.23182 0.97425 0.80159 1.01607 1.86503 1.24390 1.32786 1.84513 1.24740 0.80541 0.94135 0.72440 1.90930 1.60468 1.43830 1.44469 1.21976 0.96118 0.89077 1.07149 1.18257 0.88134 0.93250 0.79456 0.94568 1.21601 1.08725 0.93099 1.32979 0.89410 1.26047 0.97152 1.00867 0.94334 1.70063 1.17698 1.32947 1.32537 0.85528 0.77619 0.79522 0.78458 1.17666 1.22329 1.19317 1.58101 1.66049 1.46651 1.09300 1.19940 1.01755 1.00425 0.80141 1.20681 0.94497 0.93043 0.97198 1.21212 1.01051 1.01417 0.89129 1.21783 0.92367 0.91912 1.02046 1.21824 0.99863 0.99892 0.93590 1.20538 0.94465 0.95308 0.94578 1.30624 1.12285 1.07940 1.25658 1.03957 0.74369 0.74848 0.74191 1.93531 1.73420 1.51690 1.79574 1.93531 1.42502 1.82905 1.80112 0.91067 0.90861 0.88428 0.92496 0.92637 0.85666 0.85639 0.92542 0.87672 0.87919 0.81310 0.80161 0.81018 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 10.29 71.98 0.74 -1.82 16 2 C 0.05 1.43 6.19 71.98 0.45 1.87 16 3 O -0.36 -12.11 10.22 -51.42 -0.53 -12.64 16 4 C 0.44 17.57 7.82 71.23 0.56 18.13 16 5 O -0.51 -25.18 12.45 29.06 0.36 -24.82 16 6 C -0.10 -3.87 5.18 29.85 0.15 -3.72 16 7 C 0.31 14.90 2.20 44.25 0.10 14.99 16 8 H 0.04 2.12 7.11 -2.39 -0.02 2.10 16 9 C -0.52 -25.70 8.52 25.60 0.22 -25.48 16 10 H 0.09 3.84 7.81 -2.91 -0.02 3.81 16 11 C 0.02 1.11 5.46 84.65 0.46 1.58 16 12 N -0.90 -53.82 12.79 21.45 0.27 -53.54 16 13 Si 0.96 41.71 29.54 68.60 2.03 43.74 16 14 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 15 H -0.30 -13.31 7.11 99.48 0.71 -12.61 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 17 N -0.95 -44.31 2.40 -503.14 -1.21 -45.52 16 18 C 0.10 3.63 6.25 85.51 0.53 4.17 16 19 C -0.05 -1.72 6.06 -19.75 -0.12 -1.84 16 20 C -0.11 -2.47 10.03 22.46 0.23 -2.24 16 21 C -0.06 -1.16 10.00 22.17 0.22 -0.94 16 22 C -0.13 -2.91 10.10 22.30 0.23 -2.68 16 23 C -0.03 -0.95 10.03 22.16 0.22 -0.73 16 24 C -0.68 -26.67 6.36 22.13 0.14 -26.53 16 25 S 2.63 134.10 6.14 -56.49 -0.35 133.76 16 26 O -0.99 -55.77 15.42 -119.27 -1.84 -57.61 16 27 O -1.00 -59.56 18.08 -128.14 -2.32 -61.88 16 28 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 32 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 33 H 0.13 4.22 8.14 -2.39 -0.02 4.20 16 34 H 0.13 3.82 7.39 -2.39 -0.02 3.80 16 35 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.10 3.01 7.54 -2.39 -0.02 2.99 16 38 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -85.50 360.22 1.60 -83.91 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 1.05 Total: 19.84 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 4.12 Total: -25.24 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -0.93 Total: -99.06 kcal Atomic # 8 Polarization: -152.62 SS G_CDS: -4.32 Total: -156.94 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: 134.10 SS G_CDS: -0.35 Total: 133.76 kcal Total: -85.50 1.60 -83.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250378321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.281 kcal (2) G-P(sol) polarization free energy of solvation -85.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds