Wall clock time and date at job start Tue Mar 31 2020 22:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 116.99715 * 2 1 4 4 O 1.20825 * 120.00376 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99837 * 179.97438 * 3 2 1 6 6 O 1.42898 * 109.47092 * 180.02562 * 5 3 2 7 7 C 1.42898 * 113.99686 * 180.02562 * 6 5 3 8 8 C 1.53004 * 109.47171 * 179.97438 * 7 6 5 9 9 N 1.46492 * 109.47018 * 64.99880 * 8 7 6 10 10 C 1.34784 * 120.00217 * 180.02562 * 9 8 7 11 11 O 1.21552 * 119.99611 * 359.97438 * 10 9 8 12 12 C 1.47865 * 120.00304 * 179.97438 * 10 9 8 13 13 C 1.39665 * 120.09843 * 359.97438 * 12 10 9 14 14 C 1.38047 * 120.03832 * 180.02562 * 13 12 10 15 15 C 1.38176 * 120.23812 * 359.67600 * 14 13 12 16 16 C 1.39179 * 120.20540 * 0.60009 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.69520 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31631 * 119.99738 * 180.02562 * 20 18 17 22 22 Si 1.86791 * 120.00147 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46962 * 89.99772 * 22 20 18 24 24 H 1.48502 * 109.47274 * 210.00042 * 22 20 18 25 25 H 1.48499 * 109.47299 * 330.00031 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.42658 * 16 15 14 27 27 H 1.08995 * 109.47276 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47623 * 300.00687 * 1 2 3 29 29 H 1.09007 * 109.47048 * 60.00501 * 1 2 3 30 30 H 1.09005 * 109.47251 * 59.99863 * 5 3 2 31 31 H 1.09003 * 109.46783 * 300.00126 * 5 3 2 32 32 H 1.09005 * 109.47443 * 59.99954 * 7 6 5 33 33 H 1.09004 * 109.47804 * 299.99585 * 7 6 5 34 34 H 1.09005 * 109.46655 * 304.99889 * 8 7 6 35 35 H 1.09002 * 109.47164 * 184.99820 * 8 7 6 36 36 H 0.96996 * 120.00373 * 359.97438 * 9 8 7 37 37 H 1.08002 * 119.98607 * 0.02562 * 13 12 10 38 38 H 1.07993 * 119.87788 * 179.97438 * 14 13 12 39 39 H 1.08004 * 119.89897 * 180.29644 * 15 14 13 40 40 H 0.96995 * 120.00040 * 180.02562 * 21 20 18 41 41 H 1.08000 * 120.12505 * 180.25503 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9714 2.6453 0.0011 7 6 5.3881 2.8325 0.0011 8 6 5.7047 4.3294 0.0010 9 7 5.2347 4.9280 1.2526 10 6 5.4066 6.2461 1.4756 11 8 5.9521 6.9380 0.6382 12 6 4.9317 6.8505 2.7388 13 6 4.3042 6.0575 3.7021 14 6 3.8608 6.6231 4.8807 15 6 4.0411 7.9727 5.1159 16 6 4.6600 8.7734 4.1605 17 16 4.8803 10.4953 4.4621 18 6 3.4454 11.1321 3.6620 19 1 2.7106 10.4552 3.2517 20 6 3.2593 12.5031 3.5593 21 7 2.1871 12.9787 2.9620 22 14 4.5303 13.6739 4.2684 23 1 5.5487 13.9849 3.2333 24 1 3.8622 14.9285 4.6984 25 1 5.1905 13.0390 5.4373 26 6 5.1089 8.2132 2.9716 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.9564 0.7806 -0.8892 31 1 3.9556 0.7810 0.8909 32 1 5.8156 2.3710 -0.8891 33 1 5.8158 2.3704 0.8909 34 1 5.2032 4.8067 -0.8410 35 1 6.7816 4.4730 -0.0886 36 1 4.7991 4.3760 1.9207 37 1 4.1657 5.0011 3.5249 38 1 3.3755 6.0076 5.6237 39 1 3.6963 8.4086 6.0420 40 1 2.0571 13.9372 2.8899 41 1 5.5932 8.8312 2.2301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001302142879.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:39 Heat of formation + Delta-G solvation = -165.081065 kcal Electronic energy + Delta-G solvation = -25382.763664 eV Core-core repulsion = 21353.322451 eV Total energy + Delta-G solvation = -4029.441212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.52633 -41.24030 -39.41635 -38.90372 -37.47594 -35.92006 -34.73159 -32.71371 -31.99721 -31.00379 -29.58758 -27.93787 -27.51421 -25.22017 -23.93456 -23.13579 -22.27828 -21.74953 -20.11531 -19.14694 -18.72505 -18.07140 -17.97020 -17.53845 -17.31538 -17.15722 -16.95111 -16.61718 -16.29785 -16.11830 -15.65751 -15.16881 -15.00077 -14.81938 -14.71157 -14.39941 -14.16889 -13.88194 -13.67581 -13.55356 -13.16511 -13.09575 -13.07878 -12.94136 -12.69403 -12.39514 -12.28115 -11.86217 -11.85749 -11.51459 -11.26233 -11.22265 -10.96059 -10.75064 -10.30244 -9.93183 -9.76328 -9.15538 -8.55004 -6.29480 -0.22622 0.18937 1.05252 1.10333 1.30766 1.35031 1.43187 1.64417 1.75304 2.09299 2.20933 2.58152 2.82875 2.87261 2.95220 3.64759 3.71546 3.87978 3.92544 4.00877 4.18587 4.23574 4.25631 4.30018 4.30396 4.32707 4.42882 4.50285 4.58557 4.63008 4.70624 4.85081 4.89001 5.17849 5.27320 5.30106 5.33203 5.41785 5.67468 5.80855 5.97282 6.08935 6.43301 6.69728 6.86924 7.11282 8.58913 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015698 B = 0.002139 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.204400 B =13088.535081 C =13635.423964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.454 3.546 4 O -0.536 6.536 5 C 0.073 3.927 6 O -0.403 6.403 7 C 0.058 3.942 8 C 0.114 3.886 9 N -0.704 5.704 10 C 0.560 3.440 11 O -0.583 6.583 12 C -0.159 4.159 13 C -0.060 4.060 14 C -0.122 4.122 15 C -0.058 4.058 16 C -0.121 4.121 17 S -0.110 6.110 18 C -0.526 4.526 19 H 0.043 0.957 20 C 0.038 3.962 21 N -0.921 5.921 22 Si 0.925 3.075 23 H -0.262 1.262 24 H -0.256 1.256 25 H -0.225 1.225 26 C -0.043 4.043 27 H 0.137 0.863 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.416 0.584 37 H 0.170 0.830 38 H 0.177 0.823 39 H 0.142 0.858 40 H 0.278 0.722 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.016 -34.383 -1.603 34.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.297 3.703 4 O -0.425 6.425 5 C -0.004 4.004 6 O -0.323 6.323 7 C -0.017 4.017 8 C -0.009 4.009 9 N -0.357 5.357 10 C 0.348 3.652 11 O -0.464 6.464 12 C -0.164 4.164 13 C -0.078 4.078 14 C -0.141 4.141 15 C -0.079 4.079 16 C -0.232 4.232 17 S 0.123 5.877 18 C -0.673 4.673 19 H 0.061 0.939 20 C -0.167 4.167 21 N -0.558 5.558 22 Si 0.745 3.255 23 H -0.186 1.186 24 H -0.180 1.180 25 H -0.148 1.148 26 C -0.065 4.065 27 H 0.155 0.845 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.254 0.746 37 H 0.188 0.812 38 H 0.195 0.805 39 H 0.160 0.840 40 H 0.088 0.912 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.768 -32.729 -1.718 33.277 hybrid contribution -1.448 0.434 -0.802 1.711 sum 4.320 -32.295 -2.520 32.680 Atomic orbital electron populations 1.23544 0.74656 1.05858 1.02307 1.86448 1.24904 1.32080 1.83937 1.24119 0.92983 0.81286 0.71870 1.90748 1.68108 1.37909 1.45726 1.21953 0.85880 0.85051 1.07490 1.87992 1.24159 1.24068 1.96074 1.22985 0.79871 0.93911 1.04953 1.21600 1.00573 0.92870 0.85837 1.45669 1.60914 1.07581 1.21569 1.18378 0.78141 0.82736 0.85975 1.90751 1.45293 1.62653 1.47744 1.19982 1.06046 0.93996 0.96380 1.21732 0.93529 1.00634 0.91952 1.21563 1.00199 0.93975 0.98400 1.22087 0.93010 0.94512 0.98271 1.22092 1.04702 0.98514 0.97862 1.82538 1.34478 0.97509 1.73139 1.22391 1.06340 0.95337 1.43199 0.93867 1.25791 0.97755 0.99067 0.94067 1.70044 1.28646 1.14909 1.42232 0.85728 0.79222 0.79360 0.81153 1.18646 1.18045 1.14843 1.21652 0.95100 0.94466 0.95291 0.84487 0.92266 0.92452 0.85533 0.85035 0.87851 0.88619 0.92822 0.88390 0.74615 0.81224 0.80539 0.84049 0.91236 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -4.53 10.57 -51.42 -0.54 -5.07 16 3 C 0.45 7.40 8.03 71.24 0.57 7.97 16 4 O -0.54 -14.46 16.25 28.40 0.46 -14.00 16 5 C 0.07 0.54 6.53 71.24 0.47 1.01 16 6 O -0.40 -5.79 9.82 -129.90 -1.28 -7.07 16 7 C 0.06 0.45 6.07 71.98 0.44 0.89 16 8 C 0.11 1.96 6.06 86.38 0.52 2.49 16 9 N -0.70 -15.36 5.45 -465.94 -2.54 -17.90 16 10 C 0.56 18.57 7.77 86.79 0.67 19.24 16 11 O -0.58 -24.63 16.34 -3.88 -0.06 -24.69 16 12 C -0.16 -5.45 5.87 -20.11 -0.12 -5.56 16 13 C -0.06 -1.48 9.54 22.57 0.22 -1.27 16 14 C -0.12 -3.08 10.02 22.21 0.22 -2.85 16 15 C -0.06 -2.02 9.79 22.48 0.22 -1.80 16 16 C -0.12 -5.33 5.45 22.65 0.12 -5.21 16 17 S -0.11 -5.66 19.38 -56.49 -1.09 -6.75 16 18 C -0.53 -32.57 10.01 67.94 0.68 -31.89 16 19 H 0.04 2.98 8.02 -2.91 -0.02 2.95 16 20 C 0.04 2.32 5.50 84.84 0.47 2.78 16 21 N -0.92 -58.72 13.97 21.64 0.30 -58.42 16 22 Si 0.93 45.08 27.74 68.60 1.90 46.98 16 23 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.23 -10.37 6.74 99.48 0.67 -9.70 16 26 C -0.04 -1.88 9.34 22.70 0.21 -1.66 16 27 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 29 H 0.06 0.66 8.13 -2.38 -0.02 0.64 16 30 H 0.13 0.17 8.14 -2.38 -0.02 0.15 16 31 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 33 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.05 1.22 8.14 -2.38 -0.02 1.21 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.42 6.47 6.50 -92.71 -0.60 5.87 16 37 H 0.17 2.45 6.40 -2.91 -0.02 2.43 16 38 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.28 16.25 8.31 -92.71 -0.77 15.48 16 41 H 0.11 5.23 7.65 -2.91 -0.02 5.20 16 Total: -1.00 -93.10 377.26 3.46 -89.64 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.42 Total: 11.66 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 5.89 Total: -14.37 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -2.24 Total: -76.32 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -1.42 Total: -50.83 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Atomic # 16 Polarization: -5.66 SS G_CDS: -1.09 Total: -6.75 kcal Total: -93.10 3.46 -89.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001302142879.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.442 kcal (2) G-P(sol) polarization free energy of solvation -93.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds