Wall clock time and date at job start Tue Mar 31 2020 22:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35956 * 117.00106 * 2 1 4 4 C 1.38304 * 120.06837 * 359.97438 * 3 2 1 5 5 C 1.38691 * 120.62577 * 180.02562 * 4 3 2 6 6 C 1.37738 * 120.31987 * 0.02562 * 5 4 3 7 7 C 1.39509 * 119.70537 * 359.96137 * 6 5 4 8 8 C 1.46789 * 134.30583 * 180.02562 * 7 6 5 9 9 C 1.34000 * 106.19204 * 180.02562 * 8 7 6 10 10 C 1.50706 * 124.93108 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46949 * 90.00152 * 10 9 8 12 12 S 1.65600 * 120.00242 * 164.99842 * 11 10 9 13 13 O 1.42094 * 104.27575 * 181.07211 * 12 11 10 14 14 O 1.42097 * 104.27601 * 308.93158 * 12 11 10 15 15 C 1.81403 * 104.44440 * 65.00053 * 12 11 10 16 16 C 1.53002 * 109.46498 * 180.02562 * 15 12 11 17 17 C 1.50705 * 109.47025 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99790 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00063 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00083 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99748 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47487 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47204 * 120.00361 * 21 19 17 24 24 H 1.48507 * 109.46974 * 240.00043 * 21 19 17 25 25 O 1.34420 * 110.13461 * 0.26198 * 9 8 7 26 26 C 1.34897 * 110.87399 * 359.54991 * 25 9 8 27 27 H 1.08993 * 109.47456 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47034 * 300.00610 * 1 2 3 29 29 H 1.09007 * 109.46973 * 59.99690 * 1 2 3 30 30 H 1.08004 * 119.69108 * 0.03966 * 4 3 2 31 31 H 1.07999 * 119.84307 * 179.97438 * 5 4 3 32 32 H 1.08007 * 120.14892 * 180.02562 * 6 5 4 33 33 H 1.08002 * 126.90126 * 0.03750 * 8 7 6 34 34 H 1.09000 * 109.47318 * 209.99539 * 10 9 8 35 35 H 1.09000 * 109.47161 * 330.00169 * 10 9 8 36 36 H 0.97004 * 119.99709 * 345.00016 * 11 10 9 37 37 H 1.09001 * 109.47372 * 299.99697 * 15 12 11 38 38 H 1.08995 * 109.47394 * 60.00732 * 15 12 11 39 39 H 1.09003 * 109.47400 * 299.99700 * 16 15 12 40 40 H 1.08997 * 109.47368 * 60.00308 * 16 15 12 41 41 H 0.97003 * 120.00002 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2944 2.3722 -0.0005 5 6 1.9120 3.6140 -0.0011 6 6 3.2863 3.7071 -0.0016 7 6 4.0579 2.5449 -0.0008 8 6 5.5002 2.2717 -0.0006 9 6 5.6279 0.9378 -0.0002 10 6 6.9400 0.1965 -0.0005 11 7 7.3656 -0.0433 1.3807 12 16 8.5605 -1.1446 1.6996 13 8 8.6838 -1.1277 3.1151 14 8 8.1471 -2.3186 1.0141 15 6 10.0420 -0.4424 0.9231 16 6 11.2297 -1.3798 1.1503 17 6 12.4604 -0.7969 0.5047 18 1 12.4013 0.1479 -0.0152 19 6 13.6618 -1.4692 0.5787 20 7 13.7338 -2.6195 1.2122 21 14 15.1873 -0.7463 -0.2209 22 1 14.8429 0.5462 -0.8661 23 1 16.2291 -0.5217 0.8133 24 1 15.7027 -1.6889 -1.2462 25 8 4.4157 0.3569 -0.0060 26 6 3.4375 1.2859 -0.0005 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2161 2.3112 -0.0003 31 1 1.3126 4.5124 -0.0019 32 1 3.7644 4.6756 -0.0016 33 1 6.2981 2.9996 -0.0005 34 1 6.8185 -0.7572 -0.5139 35 1 7.6940 0.7926 -0.5147 36 1 6.9474 0.4430 2.1084 37 1 9.8709 -0.3261 -0.1471 38 1 10.2571 0.5306 1.3646 39 1 11.4010 -1.4965 2.2204 40 1 11.0144 -2.3527 0.7085 41 1 14.5790 -3.0926 1.2639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318435293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:44 Heat of formation + Delta-G solvation = -111.585279 kcal Electronic energy + Delta-G solvation = -26018.001370 eV Core-core repulsion = 21990.879909 eV Total energy + Delta-G solvation = -4027.121461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.53595 -40.51924 -38.20546 -37.90482 -37.05802 -36.60064 -35.86318 -33.34199 -33.09686 -31.34306 -30.45190 -28.34659 -27.56723 -26.74311 -23.98111 -23.58400 -22.56486 -22.17430 -20.40606 -19.26134 -19.03518 -18.61021 -18.32518 -17.86187 -17.32155 -17.05265 -16.85039 -16.50049 -16.39838 -16.17142 -15.98057 -15.44463 -15.12183 -14.86879 -14.44782 -14.38701 -14.17701 -13.71758 -13.64034 -13.31143 -13.23601 -13.20518 -13.11778 -12.93158 -12.86206 -12.74493 -12.36373 -12.25696 -12.21285 -12.20960 -12.08152 -11.71287 -11.19292 -10.79389 -10.63056 -10.52699 -9.63004 -8.85670 -8.23448 -6.36870 -0.75848 -0.13398 0.30344 1.18274 1.43656 1.43870 1.57130 1.60252 1.94157 2.23915 2.40328 2.66638 2.81333 3.10559 3.16231 3.31358 3.75762 3.86563 3.93779 4.02949 4.10642 4.16335 4.23639 4.28065 4.37012 4.37793 4.40961 4.49975 4.65026 4.70040 4.74740 4.81851 5.10881 5.15418 5.31590 5.33032 5.36610 5.44460 5.67573 5.71971 5.91573 5.95933 6.08938 6.39639 6.77885 7.33307 8.89009 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022948 B = 0.002169 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.862032 B =12906.882724 C =13591.585597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.346 6.346 3 C 0.118 3.882 4 C -0.183 4.183 5 C -0.092 4.092 6 C -0.111 4.111 7 C -0.111 4.111 8 C -0.175 4.175 9 C 0.014 3.986 10 C 0.183 3.817 11 N -1.110 6.110 12 S 2.619 3.381 13 O -0.997 6.997 14 O -0.999 6.999 15 C -0.581 4.581 16 C 0.016 3.984 17 C -0.534 4.534 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.936 5.936 21 Si 0.974 3.026 22 H -0.253 1.253 23 H -0.281 1.281 24 H -0.281 1.281 25 O -0.210 6.210 26 C -0.011 4.011 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.157 0.843 33 H 0.197 0.803 34 H 0.093 0.907 35 H 0.146 0.854 36 H 0.425 0.575 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.006 0.994 40 H 0.007 0.993 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.320 17.144 -5.390 32.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.260 6.260 3 C 0.072 3.928 4 C -0.202 4.202 5 C -0.110 4.110 6 C -0.129 4.129 7 C -0.112 4.112 8 C -0.195 4.195 9 C -0.034 4.034 10 C 0.058 3.942 11 N -0.871 5.871 12 S 2.716 3.284 13 O -0.988 6.988 14 O -0.988 6.988 15 C -0.714 4.714 16 C -0.022 4.022 17 C -0.573 4.573 18 H 0.099 0.901 19 C -0.206 4.206 20 N -0.576 5.576 21 Si 0.798 3.202 22 H -0.176 1.176 23 H -0.207 1.207 24 H -0.206 1.206 25 O -0.113 6.113 26 C -0.058 4.058 27 H 0.131 0.869 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.186 0.814 31 H 0.187 0.813 32 H 0.175 0.825 33 H 0.214 0.786 34 H 0.111 0.889 35 H 0.163 0.837 36 H 0.261 0.739 37 H 0.170 0.830 38 H 0.169 0.831 39 H 0.024 0.976 40 H 0.026 0.974 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -27.267 15.588 -5.002 31.804 hybrid contribution 0.789 0.217 -0.059 0.820 sum -26.478 15.805 -5.061 31.249 Atomic orbital electron populations 1.23410 0.75686 1.05683 1.02874 1.86141 1.24204 1.26754 1.88947 1.18148 0.86701 0.86640 1.01288 1.21376 1.01245 0.90402 1.07181 1.21276 0.94143 0.97904 0.97661 1.20869 0.93600 0.97109 1.01326 1.20126 0.93702 0.92993 1.04369 1.22742 0.94996 0.94775 1.07026 1.22423 0.84725 0.92741 1.03553 1.20135 0.89145 1.01904 0.83039 1.55461 1.54929 1.62426 1.14269 1.04577 0.76125 0.74017 0.73642 1.93509 1.87172 1.86895 1.31209 1.93508 1.81123 1.47656 1.76554 1.30298 1.14245 1.12020 1.14802 1.18861 0.92739 0.93845 0.96801 1.21570 0.93460 1.07320 1.34907 0.90133 1.26138 1.03173 0.95276 0.95970 1.70117 1.27363 1.16415 1.43680 0.85258 0.78037 0.78916 0.77980 1.17616 1.20676 1.20643 1.84013 1.14124 1.36467 1.76667 1.19332 0.88377 0.88128 1.09967 0.86895 0.90959 0.90783 0.81443 0.81330 0.82494 0.78601 0.88905 0.83680 0.73916 0.82990 0.83101 0.97582 0.97428 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.35 -7.84 10.50 -93.06 -0.98 -8.82 16 3 C 0.12 2.62 6.70 22.55 0.15 2.77 16 4 C -0.18 -2.59 9.03 22.39 0.20 -2.39 16 5 C -0.09 -1.06 10.03 22.26 0.22 -0.83 16 6 C -0.11 -1.60 10.10 22.46 0.23 -1.37 16 7 C -0.11 -2.30 6.39 -20.22 -0.13 -2.43 16 8 C -0.18 -3.24 11.01 23.54 0.26 -2.98 16 9 C 0.01 0.33 6.63 24.72 0.16 0.49 16 10 C 0.18 3.82 6.63 85.63 0.57 4.38 16 11 N -1.11 -27.31 5.88 -190.78 -1.12 -28.43 16 12 S 2.62 90.93 5.46 -56.49 -0.31 90.62 16 13 O -1.00 -41.60 18.08 -127.65 -2.31 -43.91 16 14 O -1.00 -41.90 17.50 -127.65 -2.23 -44.13 16 15 C -0.58 -20.14 6.01 71.98 0.43 -19.71 16 16 C 0.02 0.84 4.98 29.85 0.15 0.99 16 17 C -0.53 -28.65 9.11 25.60 0.23 -28.42 16 18 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 19 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 20 N -0.94 -56.64 13.29 21.45 0.28 -56.35 16 21 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 22 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 O -0.21 -6.19 10.58 -9.55 -0.10 -6.30 16 26 C -0.01 -0.28 7.35 23.05 0.17 -0.11 16 27 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 29 H 0.07 0.52 7.66 -2.38 -0.02 0.50 16 30 H 0.17 1.23 6.26 -2.91 -0.02 1.21 16 31 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 32 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 33 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.09 2.14 7.69 -2.39 -0.02 2.12 16 35 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.42 9.28 8.61 -96.74 -0.83 8.45 16 37 H 0.15 4.28 8.14 -2.39 -0.02 4.26 16 38 H 0.15 4.40 8.14 -2.39 -0.02 4.38 16 39 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -85.79 368.32 -0.28 -86.07 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.24 Total: 14.84 kcal Atomic # 6 Polarization: -52.49 SS G_CDS: 4.22 Total: -48.26 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -0.84 Total: -84.78 kcal Atomic # 8 Polarization: -97.54 SS G_CDS: -5.62 Total: -103.16 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 90.93 SS G_CDS: -0.31 Total: 90.62 kcal Total: -85.79 -0.28 -86.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318435293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.519 kcal (2) G-P(sol) polarization free energy of solvation -85.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds