Wall clock time and date at job start Tue Mar 31 2020 23:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99262 * 2 1 4 4 H 1.48497 * 109.47353 * 269.99719 * 3 2 1 5 5 H 1.48498 * 109.47266 * 30.00383 * 3 2 1 6 6 H 1.48505 * 109.46827 * 150.00122 * 3 2 1 7 7 C 1.38792 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99890 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00204 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00025 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.46929 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99930 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99596 * 179.97438 * 11 10 9 14 14 C 1.47150 * 120.98603 * 0.02562 * 13 11 10 15 15 C 1.53297 * 108.41463 * 230.54242 * 14 13 11 16 16 O 1.42967 * 109.22068 * 307.67604 * 15 14 13 17 17 C 1.42959 * 114.16507 * 62.58210 * 16 15 14 18 18 H 1.08993 * 109.51344 * 57.39509 * 17 16 15 19 19 C 1.50700 * 109.51361 * 177.49700 * 17 16 15 20 20 N 1.29955 * 126.28613 * 45.01974 * 19 17 16 21 21 O 1.21303 * 110.24820 * 179.97438 * 20 19 17 22 22 C 1.33643 * 109.81492 * 0.02562 * 21 20 19 23 23 C 1.50697 * 126.55457 * 179.97438 * 22 21 20 24 24 C 1.53005 * 117.49333 * 8.72195 * 23 22 21 25 25 C 1.53001 * 117.49766 * 300.06425 * 23 22 21 26 26 N 1.31138 * 106.89608 * 359.76859 * 22 21 20 27 27 C 1.47227 * 121.02629 * 180.02562 * 13 11 10 28 28 H 0.96993 * 120.00635 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47584 * 59.99833 * 10 9 7 30 30 H 1.09002 * 109.46880 * 299.99676 * 10 9 7 31 31 H 1.09002 * 109.68441 * 110.79633 * 14 13 11 32 32 H 1.08999 * 109.68020 * 350.27975 * 14 13 11 33 33 H 1.08996 * 109.51604 * 67.59956 * 15 14 13 34 34 H 1.08994 * 109.51066 * 187.70414 * 15 14 13 35 35 H 1.08990 * 115.55248 * 154.39178 * 23 22 21 36 36 H 1.08992 * 117.50249 * 0.02562 * 24 23 22 37 37 H 1.09006 * 117.49584 * 145.02395 * 24 23 22 38 38 H 1.08995 * 117.50414 * 214.97666 * 25 23 22 39 39 H 1.09003 * 117.50074 * 359.97438 * 25 23 22 40 40 H 1.09000 * 109.67268 * 9.73779 * 27 13 11 41 41 H 1.09002 * 109.70663 * 249.21494 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5478 1.4404 0.7000 7 6 2.0104 -1.2019 0.0005 8 1 3.0905 -1.2018 0.0001 9 16 1.1296 -2.7280 0.0005 10 6 2.5162 -3.8912 0.0021 11 6 1.9878 -5.3026 0.0017 12 8 0.7916 -5.5023 0.0009 13 7 2.8447 -6.3429 0.0022 14 6 4.3001 -6.1256 0.0037 15 6 4.9166 -6.9679 -1.1189 16 8 4.4775 -8.3220 -0.9868 17 6 3.0648 -8.4949 -1.1216 18 1 2.7413 -8.1084 -2.0880 19 6 2.7257 -9.9602 -1.0264 20 7 3.1917 -10.8023 -0.1533 21 8 2.7245 -11.9056 -0.3431 22 6 1.8912 -11.8711 -1.3874 23 6 1.1083 -13.0295 -1.9496 24 6 1.1096 -14.3358 -1.1530 25 6 1.8995 -14.2353 -2.4603 26 7 1.8815 -10.6354 -1.8266 27 6 2.3534 -7.7308 0.0013 28 1 -0.4851 0.8399 0.0004 29 1 3.1242 -3.7307 0.8925 30 1 3.1254 -3.7315 -0.8875 31 1 4.7161 -6.4321 0.9635 32 1 4.5139 -5.0708 -0.1690 33 1 4.5997 -6.5750 -2.0850 34 1 6.0036 -6.9284 -1.0487 35 1 0.1944 -12.7653 -2.4815 36 1 1.6763 -14.3572 -0.2222 37 1 0.1966 -14.9313 -1.1613 38 1 1.5060 -14.7646 -3.3281 39 1 2.9864 -14.1905 -2.3901 40 1 1.2775 -7.7391 -0.1734 41 1 2.5730 -8.1991 0.9607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332383505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:52 Heat of formation + Delta-G solvation = 32.676379 kcal Electronic energy + Delta-G solvation = -26184.692131 eV Core-core repulsion = 22196.119076 eV Total energy + Delta-G solvation = -3988.573055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.95874 -40.35904 -38.36926 -38.01561 -36.21315 -34.78126 -33.06461 -32.46284 -31.38090 -29.59053 -27.83703 -25.62543 -25.44497 -25.05913 -23.68121 -23.02651 -22.68186 -20.69954 -19.43787 -18.43069 -18.02408 -17.73047 -17.08049 -16.91103 -16.51251 -15.91907 -15.70703 -15.43680 -15.15685 -14.90980 -14.83399 -14.07002 -13.68747 -13.54631 -13.46409 -13.09988 -12.68142 -12.60233 -12.37997 -12.21113 -12.15085 -12.04703 -11.84824 -11.55949 -11.38844 -11.22346 -11.09152 -11.06000 -11.05150 -10.79361 -10.47273 -10.06797 -9.85094 -9.49863 -9.09989 -8.64900 -8.28044 -6.54953 -6.24906 -3.96385 0.75526 1.72650 2.34580 2.63396 2.77289 2.92335 3.17207 3.20085 3.21516 3.27689 3.48003 3.61587 3.71598 4.08573 4.16353 4.22227 4.30667 4.46178 4.58864 4.65268 4.81255 4.87810 4.94419 5.01543 5.06743 5.10345 5.14263 5.29891 5.31592 5.35028 5.38943 5.44904 5.51368 5.59468 5.66020 5.68793 5.78865 6.02762 6.32169 6.64407 7.35336 7.56048 7.83709 8.31505 8.39735 9.20257 10.82479 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029018 B = 0.002044 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.670440 B =13692.701307 C =14322.624365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.151 4.151 11 C 0.538 3.462 12 O -0.510 6.510 13 N -0.623 5.623 14 C 0.071 3.929 15 C 0.050 3.950 16 O -0.370 6.370 17 C 0.173 3.827 18 H 0.099 0.901 19 C 0.180 3.820 20 N -0.354 5.354 21 O 0.083 5.917 22 C 0.209 3.791 23 C -0.081 4.081 24 C -0.158 4.158 25 C -0.153 4.153 26 N -0.465 5.465 27 C 0.095 3.905 28 H 0.269 0.731 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.152 0.848 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.339 -27.685 -3.951 29.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.301 4.301 11 C 0.326 3.674 12 O -0.383 6.383 13 N -0.361 5.361 14 C -0.052 4.052 15 C -0.027 4.027 16 O -0.288 6.288 17 C 0.113 3.887 18 H 0.117 0.883 19 C -0.094 4.094 20 N -0.059 5.059 21 O 0.021 5.979 22 C -0.011 4.011 23 C -0.100 4.100 24 C -0.195 4.195 25 C -0.191 4.191 26 N -0.199 5.199 27 C -0.029 4.029 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.169 0.831 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.970 -27.363 -3.538 28.457 hybrid contribution 1.853 1.456 -0.073 2.358 sum 8.823 -25.906 -3.612 27.605 Atomic orbital electron populations 1.70013 1.05959 1.27530 1.46697 1.24997 0.95040 0.99058 0.94479 0.86158 0.79404 0.81515 0.78363 1.20248 1.20721 1.19679 1.22848 0.94890 0.91543 1.59154 0.90881 1.85447 1.04707 0.96340 1.96713 1.23559 1.06741 0.94913 1.04885 1.20426 0.86120 0.86069 0.74761 1.90708 1.15060 1.85055 1.47483 1.48157 1.06520 1.05124 1.76308 1.22473 0.80319 1.02306 1.00102 1.23108 1.00323 0.81114 0.98150 1.87963 1.19917 1.27380 1.93555 1.20306 0.83382 0.84405 1.00626 0.88340 1.25052 0.95089 0.98577 0.90648 1.74714 1.18211 0.91111 1.21845 1.85309 1.44623 1.26889 1.41101 1.27670 0.92215 0.94349 0.86824 1.20345 1.00458 0.83450 1.05791 1.23208 1.03588 0.96210 0.96524 1.23197 0.99705 0.97368 0.98837 1.71814 1.19823 1.02179 1.26047 1.22062 1.01102 0.81828 0.97939 0.92129 0.89012 0.89073 0.90238 0.87718 0.91796 0.86771 0.83059 0.87347 0.86713 0.86695 0.87849 0.87372 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.10 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.01 4.53 36.01 0.16 -2.84 16 11 C 0.54 10.30 7.73 -10.98 -0.08 10.21 16 12 O -0.51 -11.73 15.34 5.56 0.09 -11.65 16 13 N -0.62 -9.27 3.02 -172.19 -0.52 -9.79 16 14 C 0.07 0.79 6.54 -3.53 -0.02 0.77 16 15 C 0.05 0.49 6.99 37.31 0.26 0.75 16 16 O -0.37 -4.65 10.37 -35.23 -0.37 -5.01 16 17 C 0.17 2.26 3.33 -27.71 -0.09 2.17 16 18 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 19 C 0.18 2.41 7.10 -156.36 -1.11 1.30 16 20 N -0.35 -4.71 12.16 30.91 0.38 -4.33 16 21 O 0.08 0.91 11.08 18.10 0.20 1.11 16 22 C 0.21 2.06 7.97 -13.05 -0.10 1.96 16 23 C -0.08 -0.45 6.33 -91.77 -0.58 -1.03 16 24 C -0.16 -0.54 10.18 -26.69 -0.27 -0.81 16 25 C -0.15 -0.54 10.24 -26.69 -0.27 -0.82 16 26 N -0.47 -5.88 11.55 -9.86 -0.11 -5.99 16 27 C 0.10 1.35 5.92 -3.48 -0.02 1.33 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.09 1.69 8.01 -51.92 -0.42 1.27 16 30 H 0.09 1.64 7.66 -51.91 -0.40 1.25 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.07 6.05 -51.93 -0.31 0.75 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.15 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.40 8.00 -51.93 -0.42 -0.02 16 37 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.11 1.69 7.09 -51.93 -0.37 1.32 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -36.37 366.24 -8.52 -44.89 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.26 Total: -2.06 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -1.94 Total: 0.18 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.48 Total: -45.39 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.08 Total: -15.54 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.37 -8.52 -44.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332383505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.564 kcal (2) G-P(sol) polarization free energy of solvation -36.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds