Wall clock time and date at job start Tue Mar 31 2020 23:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99262 * 2 1 4 4 H 1.48497 * 109.47353 * 269.99719 * 3 2 1 5 5 H 1.48498 * 109.47266 * 30.00383 * 3 2 1 6 6 H 1.48505 * 109.46827 * 150.00122 * 3 2 1 7 7 C 1.38792 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99890 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00204 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00025 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.46929 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99930 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99596 * 179.97438 * 11 10 9 14 14 C 1.47150 * 120.98603 * 0.02562 * 13 11 10 15 15 C 1.53297 * 108.41463 * 230.54242 * 14 13 11 16 16 O 1.42967 * 109.22068 * 307.67604 * 15 14 13 17 17 C 1.42959 * 114.16507 * 62.58210 * 16 15 14 18 18 H 1.08993 * 109.51344 * 57.39509 * 17 16 15 19 19 C 1.50700 * 109.51361 * 177.49700 * 17 16 15 20 20 N 1.29955 * 126.28613 * 45.01974 * 19 17 16 21 21 O 1.21303 * 110.24820 * 179.97438 * 20 19 17 22 22 C 1.33643 * 109.81492 * 0.02562 * 21 20 19 23 23 C 1.50697 * 126.55457 * 179.97438 * 22 21 20 24 24 C 1.53005 * 117.49333 * 8.72195 * 23 22 21 25 25 C 1.53001 * 117.49766 * 300.06425 * 23 22 21 26 26 N 1.31138 * 106.89608 * 359.76859 * 22 21 20 27 27 C 1.47227 * 121.02629 * 180.02562 * 13 11 10 28 28 H 0.96993 * 120.00635 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47584 * 59.99833 * 10 9 7 30 30 H 1.09002 * 109.46880 * 299.99676 * 10 9 7 31 31 H 1.09002 * 109.68441 * 110.79633 * 14 13 11 32 32 H 1.08999 * 109.68020 * 350.27975 * 14 13 11 33 33 H 1.08996 * 109.51604 * 67.59956 * 15 14 13 34 34 H 1.08994 * 109.51066 * 187.70414 * 15 14 13 35 35 H 1.08990 * 115.55248 * 154.39178 * 23 22 21 36 36 H 1.08992 * 117.50249 * 0.02562 * 24 23 22 37 37 H 1.09006 * 117.49584 * 145.02395 * 24 23 22 38 38 H 1.08995 * 117.50414 * 214.97666 * 25 23 22 39 39 H 1.09003 * 117.50074 * 359.97438 * 25 23 22 40 40 H 1.09000 * 109.67268 * 9.73779 * 27 13 11 41 41 H 1.09002 * 109.70663 * 249.21494 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5478 1.4404 0.7000 7 6 2.0104 -1.2019 0.0005 8 1 3.0905 -1.2018 0.0001 9 16 1.1296 -2.7280 0.0005 10 6 2.5162 -3.8912 0.0021 11 6 1.9878 -5.3026 0.0017 12 8 0.7916 -5.5023 0.0009 13 7 2.8447 -6.3429 0.0022 14 6 4.3001 -6.1256 0.0037 15 6 4.9166 -6.9679 -1.1189 16 8 4.4775 -8.3220 -0.9868 17 6 3.0648 -8.4949 -1.1216 18 1 2.7413 -8.1084 -2.0880 19 6 2.7257 -9.9602 -1.0264 20 7 3.1917 -10.8023 -0.1533 21 8 2.7245 -11.9056 -0.3431 22 6 1.8912 -11.8711 -1.3874 23 6 1.1083 -13.0295 -1.9496 24 6 1.1096 -14.3358 -1.1530 25 6 1.8995 -14.2353 -2.4603 26 7 1.8815 -10.6354 -1.8266 27 6 2.3534 -7.7308 0.0013 28 1 -0.4851 0.8399 0.0004 29 1 3.1242 -3.7307 0.8925 30 1 3.1254 -3.7315 -0.8875 31 1 4.7161 -6.4321 0.9635 32 1 4.5139 -5.0708 -0.1690 33 1 4.5997 -6.5750 -2.0850 34 1 6.0036 -6.9284 -1.0487 35 1 0.1944 -12.7653 -2.4815 36 1 1.6763 -14.3572 -0.2222 37 1 0.1966 -14.9313 -1.1613 38 1 1.5060 -14.7646 -3.3281 39 1 2.9864 -14.1905 -2.3901 40 1 1.2775 -7.7391 -0.1734 41 1 2.5730 -8.1991 0.9607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332383505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:50 Heat of formation + Delta-G solvation = 5.920160 kcal Electronic energy + Delta-G solvation = -26185.852368 eV Core-core repulsion = 22196.119076 eV Total energy + Delta-G solvation = -3989.733292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -46.86630 -41.56567 -39.66051 -38.41693 -37.12916 -36.03973 -34.59381 -33.97553 -32.40855 -31.01085 -28.96490 -27.69668 -26.26318 -26.09913 -24.58536 -23.64506 -23.29643 -21.52795 -20.78858 -19.69191 -19.35149 -18.75895 -18.38712 -17.86516 -17.37183 -17.05354 -16.89596 -16.83116 -16.51569 -16.22847 -15.84738 -15.45738 -15.00775 -14.88929 -14.53604 -14.12559 -14.03416 -13.61662 -13.38882 -13.28452 -13.18361 -13.11031 -12.90036 -12.81582 -12.60838 -12.43571 -12.32290 -12.27229 -11.95962 -11.74630 -11.55055 -11.50718 -11.15091 -11.05075 -10.77333 -10.29091 -9.86024 -8.69876 -8.35533 -6.14563 -0.07547 0.79740 1.18282 1.40175 1.41816 1.42799 1.54376 1.62414 1.80460 1.92534 2.25668 2.69121 2.79425 2.96055 2.98940 3.15031 3.32498 3.54795 3.57773 3.69360 3.79532 3.90008 3.93615 4.04833 4.12307 4.20494 4.21754 4.28589 4.41375 4.44042 4.45430 4.65202 4.75732 4.78267 4.79527 4.94287 5.08569 5.14255 5.22215 5.41290 5.73462 6.03282 6.19122 6.93159 6.95998 7.05779 8.73672 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029018 B = 0.002044 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.670440 B =13692.701307 C =14322.624365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.086 0.914 9 S -0.152 6.152 10 C -0.123 4.123 11 C 0.538 3.462 12 O -0.560 6.560 13 N -0.612 5.612 14 C 0.064 3.936 15 C 0.049 3.951 16 O -0.378 6.378 17 C 0.183 3.817 18 H 0.096 0.904 19 C 0.166 3.834 20 N -0.373 5.373 21 O 0.086 5.914 22 C 0.223 3.777 23 C -0.105 4.105 24 C -0.144 4.144 25 C -0.141 4.141 26 N -0.497 5.497 27 C 0.100 3.900 28 H 0.271 0.729 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.068 0.932 34 H 0.150 0.850 35 H 0.163 0.837 36 H 0.105 0.895 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.879 -28.716 -4.351 31.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.075 5.925 10 C -0.274 4.274 11 C 0.326 3.674 12 O -0.437 6.437 13 N -0.348 5.348 14 C -0.058 4.058 15 C -0.027 4.027 16 O -0.296 6.296 17 C 0.122 3.878 18 H 0.113 0.887 19 C -0.107 4.107 20 N -0.079 5.079 21 O 0.024 5.976 22 C 0.004 3.996 23 C -0.125 4.125 24 C -0.181 4.181 25 C -0.179 4.179 26 N -0.230 5.230 27 C -0.025 4.025 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.168 0.832 35 H 0.180 0.820 36 H 0.123 0.877 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.565 -28.432 -3.944 30.256 hybrid contribution 1.110 1.563 0.046 1.918 sum 10.675 -26.868 -3.897 29.173 Atomic orbital electron populations 1.70185 1.08024 1.28632 1.47988 1.26146 0.95963 1.03383 0.93735 0.84939 0.78227 0.75927 0.78798 1.19290 1.20478 1.18015 1.23195 0.95436 0.91680 1.58875 0.89556 1.85673 1.10402 0.99365 1.97060 1.23370 1.03707 0.93283 1.07015 1.20288 0.85807 0.86605 0.74658 1.90693 1.17207 1.85661 1.50153 1.48111 1.07918 1.04412 1.74329 1.22848 0.77539 1.03652 1.01745 1.23363 1.02141 0.79559 0.97664 1.87974 1.19135 1.29041 1.93494 1.20100 0.83747 0.84312 0.99627 0.88661 1.25145 0.95609 0.98821 0.91148 1.74671 1.19135 0.91712 1.22359 1.85268 1.44861 1.26050 1.41450 1.28501 0.90914 0.94698 0.85496 1.20709 1.01005 0.82999 1.07741 1.23357 1.04403 0.94104 0.96260 1.23341 0.99410 0.95242 0.99873 1.71811 1.20719 1.03443 1.27046 1.22017 1.00177 0.81469 0.98789 0.92009 0.86864 0.86569 0.88578 0.86342 0.91388 0.83234 0.81974 0.87699 0.84415 0.84440 0.88379 0.89463 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.85 13.22 21.65 0.29 -55.57 16 2 C 0.01 0.70 5.49 84.85 0.47 1.17 16 3 Si 1.00 43.09 29.55 68.60 2.03 45.12 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 7 C -0.54 -30.58 9.50 67.95 0.65 -29.94 16 8 H 0.09 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 10 C -0.12 -4.80 4.53 71.24 0.32 -4.48 16 11 C 0.54 20.67 7.73 87.66 0.68 21.35 16 12 O -0.56 -26.81 15.34 -3.02 -0.05 -26.85 16 13 N -0.61 -17.73 3.02 -817.09 -2.47 -20.20 16 14 C 0.06 1.24 6.54 86.35 0.56 1.81 16 15 C 0.05 0.82 6.99 72.08 0.50 1.32 16 16 O -0.38 -8.91 10.37 -148.98 -1.54 -10.46 16 17 C 0.18 4.76 3.33 29.96 0.10 4.86 16 18 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 19 C 0.17 4.50 7.10 138.46 0.98 5.49 16 20 N -0.37 -9.93 12.16 -60.28 -0.73 -10.66 16 21 O 0.09 1.88 11.08 74.83 0.83 2.70 16 22 C 0.22 4.33 7.97 88.38 0.70 5.04 16 23 C -0.10 -1.03 6.33 -11.54 -0.07 -1.10 16 24 C -0.14 -0.66 10.18 30.62 0.31 -0.34 16 25 C -0.14 -0.69 10.24 30.62 0.31 -0.38 16 26 N -0.50 -12.75 11.55 -303.15 -3.50 -16.25 16 27 C 0.10 2.86 5.92 86.35 0.51 3.38 16 28 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.11 3.95 8.01 -2.39 -0.02 3.93 16 30 H 0.12 3.96 7.66 -2.39 -0.02 3.94 16 31 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.12 2.01 6.05 -2.39 -0.01 1.99 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.16 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 0.59 8.00 -2.39 -0.02 0.57 16 37 H 0.14 0.03 8.14 -2.38 -0.02 0.01 16 38 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.09 2.88 7.09 -2.39 -0.02 2.87 16 41 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -82.28 366.24 0.78 -81.50 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.06 Total: 12.08 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 6.03 Total: 8.16 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -6.42 Total: -102.68 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.76 Total: -34.61 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -82.28 0.78 -81.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332383505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.424 kcal (2) G-P(sol) polarization free energy of solvation -82.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds