Wall clock time and date at job start Tue Mar 31 2020 23:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48508 * 109.47049 * 90.00269 * 3 2 1 5 5 H 1.48496 * 109.47502 * 210.00278 * 3 2 1 6 6 H 1.48505 * 109.47062 * 330.00685 * 3 2 1 7 7 C 1.37874 * 119.99898 * 180.28156 * 2 1 3 8 8 H 1.08001 * 120.00159 * 359.72071 * 7 2 1 9 9 C 1.50696 * 120.00283 * 179.72425 * 7 2 1 10 10 N 1.46494 * 109.47589 * 179.97438 * 9 7 2 11 11 C 1.34975 * 125.98031 * 124.71187 * 10 9 7 12 12 C 1.35233 * 107.86895 * 179.89940 * 11 10 9 13 13 C 1.40422 * 107.86603 * 0.36709 * 12 11 10 14 14 N 1.40092 * 125.97379 * 179.75252 * 13 12 11 15 15 C 1.34773 * 120.00346 * 0.02562 * 14 13 12 16 16 O 1.21650 * 119.99605 * 359.97438 * 15 14 13 17 17 C 1.47168 * 120.00023 * 180.02562 * 15 14 13 18 18 C 1.35896 * 120.49939 * 354.26347 * 17 15 14 19 19 O 1.33719 * 122.50249 * 179.69509 * 18 17 15 20 20 C 1.34503 * 122.86185 * 0.60763 * 19 18 17 21 21 O 1.21624 * 120.26202 * 179.69091 * 20 19 18 22 22 C 1.46873 * 119.47569 * 359.69848 * 20 19 18 23 23 C 1.39359 * 122.10351 * 180.02562 * 22 20 19 24 24 C 1.37829 * 119.49383 * 179.97438 * 23 22 20 25 25 C 1.38801 * 120.69240 * 0.02562 * 24 23 22 26 26 C 1.37923 * 120.69308 * 359.95131 * 25 24 23 27 27 C 1.39055 * 119.52136 * 0.04646 * 26 25 24 28 28 N 1.31230 * 108.04762 * 359.77287 * 13 12 11 29 29 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47218 * 299.99859 * 9 7 2 31 31 H 1.09001 * 109.47032 * 59.99713 * 9 7 2 32 32 H 1.08006 * 126.06308 * 0.03336 * 11 10 9 33 33 H 1.08004 * 126.06580 * 180.13703 * 12 11 10 34 34 H 0.97006 * 119.99926 * 179.97438 * 14 13 12 35 35 H 1.08006 * 118.74538 * 359.97438 * 18 17 15 36 36 H 1.08001 * 120.25386 * 359.97438 * 23 22 20 37 37 H 1.07998 * 119.65458 * 179.97438 * 24 23 22 38 38 H 1.08003 * 119.65548 * 179.97438 * 25 24 23 39 39 H 1.07999 * 120.24019 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4002 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.6999 7 6 2.0045 -1.1940 -0.0059 8 1 1.4645 -2.1293 -0.0059 9 6 3.5114 -1.1941 -0.0121 10 7 3.9998 -2.5752 -0.0170 11 6 4.8468 -3.1137 -0.9195 12 6 5.0527 -4.4054 -0.5762 13 6 4.2962 -4.6706 0.5767 14 7 4.2273 -5.8961 1.2519 15 6 4.9300 -6.9542 0.8013 16 8 5.6237 -6.8452 -0.1921 17 6 4.8572 -8.2418 1.5103 18 6 4.1790 -8.3458 2.6834 19 8 4.0821 -9.4964 3.3578 20 6 4.6556 -10.6385 2.9386 21 8 4.5418 -11.6576 3.5927 22 6 5.4206 -10.6454 1.6849 23 6 6.0366 -11.7973 1.1994 24 6 6.7411 -11.7428 0.0160 25 6 6.8426 -10.5544 -0.6940 26 6 6.2398 -9.4037 -0.2305 27 6 5.5243 -9.4373 0.9614 28 7 3.6646 -3.5698 0.9106 29 1 -0.4850 0.8401 0.0004 30 1 3.8711 -0.6781 -0.9024 31 1 3.8785 -0.6825 0.8776 32 1 5.2843 -2.6028 -1.7646 33 1 5.6840 -5.1092 -1.0984 34 1 3.6744 -5.9830 2.0442 35 1 3.6961 -7.4666 3.0839 36 1 5.9626 -12.7257 1.7462 37 1 7.2198 -12.6338 -0.3624 38 1 7.3992 -10.5306 -1.6192 39 1 6.3231 -8.4831 -0.7890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001360898269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:07 Heat of formation + Delta-G solvation = 16.213236 kcal Electronic energy + Delta-G solvation = -27324.580974 eV Core-core repulsion = 23199.850072 eV Total energy + Delta-G solvation = -4124.730902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.08934 -42.23001 -40.77850 -39.74827 -39.11316 -36.38127 -35.33450 -34.56270 -33.08740 -32.37625 -31.20695 -30.78839 -28.97395 -26.69672 -25.67663 -24.85641 -23.81032 -22.95016 -21.88021 -21.44153 -20.03888 -19.68607 -19.15597 -19.04263 -18.17351 -18.03978 -17.48858 -17.09420 -16.60828 -16.59292 -16.38634 -16.04455 -15.62332 -15.32362 -15.19877 -14.76206 -14.63160 -14.43171 -14.37208 -14.23817 -13.97073 -13.83604 -13.73800 -13.01101 -12.97125 -12.67480 -12.48113 -12.18903 -11.81981 -11.68540 -11.59033 -11.43719 -11.29595 -10.86778 -10.83327 -10.22271 -9.79111 -9.40387 -9.10176 -8.36247 -6.46431 -0.68987 -0.54613 0.43290 1.02912 1.05198 1.20204 1.30848 1.38858 1.40839 1.49960 1.71028 2.21807 2.28545 2.30069 2.63563 2.76217 2.96732 3.15254 3.38643 3.57791 3.81660 3.94697 4.14995 4.17872 4.22398 4.25865 4.44049 4.60253 4.62544 4.71959 4.87713 4.91536 4.96323 5.05908 5.18411 5.26134 5.31884 5.43287 5.76965 5.79428 5.86904 6.01253 6.04157 6.13037 6.41220 6.59744 6.86532 7.01807 7.16664 8.80585 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.002239 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.776857 B =12501.578702 C =13405.832814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.228 1.228 6 H -0.280 1.280 7 C -0.545 4.545 8 H 0.028 0.972 9 C 0.239 3.761 10 N -0.343 5.343 11 C 0.060 3.940 12 C -0.289 4.289 13 C 0.266 3.734 14 N -0.620 5.620 15 C 0.591 3.409 16 O -0.524 6.524 17 C -0.234 4.234 18 C 0.167 3.833 19 O -0.265 6.265 20 C 0.524 3.476 21 O -0.474 6.474 22 C -0.199 4.199 23 C -0.051 4.051 24 C -0.123 4.123 25 C -0.070 4.070 26 C -0.133 4.133 27 C 0.008 3.992 28 N -0.344 5.344 29 H 0.272 0.728 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.210 0.790 33 H 0.174 0.826 34 H 0.422 0.578 35 H 0.236 0.764 36 H 0.150 0.850 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.704 -19.767 0.207 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.151 1.151 6 H -0.206 1.206 7 C -0.584 4.584 8 H 0.046 0.954 9 C 0.119 3.881 10 N -0.125 5.125 11 C -0.088 4.088 12 C -0.320 4.320 13 C 0.011 3.989 14 N -0.270 5.270 15 C 0.380 3.620 16 O -0.400 6.400 17 C -0.239 4.239 18 C 0.102 3.898 19 O -0.174 6.174 20 C 0.372 3.628 21 O -0.361 6.361 22 C -0.200 4.200 23 C -0.069 4.069 24 C -0.141 4.141 25 C -0.087 4.087 26 C -0.150 4.150 27 C 0.007 3.993 28 N -0.174 5.174 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.226 0.774 33 H 0.191 0.809 34 H 0.261 0.739 35 H 0.252 0.748 36 H 0.168 0.832 37 H 0.185 0.815 38 H 0.179 0.821 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 16.042 -19.461 0.837 25.234 hybrid contribution -0.320 0.462 -0.036 0.564 sum 15.722 -18.998 0.801 24.673 Atomic orbital electron populations 1.70049 1.08583 1.28755 1.50739 1.25911 0.95743 1.03520 0.93320 0.85643 0.79944 0.77350 0.79584 1.19109 1.15101 1.20583 1.21236 0.90538 0.93707 1.52869 0.95378 1.19901 0.94094 0.74398 0.99713 1.48516 1.34331 1.09984 1.19700 1.23276 0.94316 0.94785 0.96378 1.21784 1.11662 0.97162 1.01379 1.19328 0.97892 0.86838 0.94810 1.42340 1.47796 1.06362 1.30500 1.17519 0.78684 0.82048 0.83705 1.90578 1.40379 1.82918 1.26122 1.20202 1.10292 0.93980 0.99394 1.24369 0.90556 0.86259 0.88625 1.83316 1.64768 1.17539 1.51734 1.20714 0.76587 0.80730 0.84761 1.90920 1.58834 1.27942 1.58400 1.20012 1.06994 0.96462 0.96576 1.21303 0.93150 0.96610 0.95820 1.21662 0.98724 0.99682 0.94012 1.21918 0.95395 0.91476 0.99940 1.22068 0.96456 1.01446 0.95070 1.18649 0.95794 0.89749 0.95147 1.77318 1.25608 0.96719 1.17775 0.91943 0.89909 0.93700 0.77353 0.80870 0.73885 0.74806 0.83198 0.81472 0.82123 0.82425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.04 13.96 21.45 0.30 -56.74 16 2 C 0.01 0.77 5.47 84.65 0.46 1.23 16 3 Si 0.95 39.56 27.47 68.60 1.88 41.45 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.23 -8.08 6.54 99.48 0.65 -7.43 16 6 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -30.43 9.79 25.60 0.25 -30.18 16 8 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 9 C 0.24 10.50 5.33 85.63 0.46 10.96 16 10 N -0.34 -14.38 3.67 -351.85 -1.29 -15.67 16 11 C 0.06 2.03 11.44 83.52 0.96 2.99 16 12 C -0.29 -9.77 9.60 22.11 0.21 -9.56 16 13 C 0.27 9.44 8.11 133.35 1.08 10.52 16 14 N -0.62 -15.96 5.39 -310.68 -1.68 -17.63 16 15 C 0.59 14.29 7.70 86.59 0.67 14.96 16 16 O -0.52 -14.87 10.78 -4.19 -0.05 -14.91 16 17 C -0.23 -4.49 5.99 -19.03 -0.11 -4.60 16 18 C 0.17 2.39 10.83 67.28 0.73 3.11 16 19 O -0.26 -4.90 9.75 24.60 0.24 -4.66 16 20 C 0.52 11.51 8.18 70.08 0.57 12.08 16 21 O -0.47 -12.66 17.39 19.43 0.34 -12.32 16 22 C -0.20 -3.90 5.89 -20.02 -0.12 -4.02 16 23 C -0.05 -0.78 9.66 22.44 0.22 -0.56 16 24 C -0.12 -1.38 10.01 22.31 0.22 -1.15 16 25 C -0.07 -0.90 10.02 22.33 0.22 -0.68 16 26 C -0.13 -2.53 9.34 22.39 0.21 -2.32 16 27 C 0.01 0.15 5.90 -19.91 -0.12 0.04 16 28 N -0.34 -14.73 12.42 -54.48 -0.68 -15.40 16 29 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.08 3.16 7.13 -2.38 -0.02 3.14 16 31 H 0.05 1.91 7.57 -2.39 -0.02 1.89 16 32 H 0.21 5.05 8.06 -2.91 -0.02 5.03 16 33 H 0.17 5.46 5.91 -2.91 -0.02 5.44 16 34 H 0.42 8.00 6.84 -92.70 -0.63 7.36 16 35 H 0.24 1.46 6.29 -2.91 -0.02 1.44 16 36 H 0.15 1.97 7.80 -2.91 -0.02 1.94 16 37 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.16 3.44 5.16 -2.91 -0.02 3.43 16 Total: -1.00 -79.13 342.06 5.44 -73.68 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.46 Total: 19.40 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.91 Total: 2.80 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -3.34 Total: -105.45 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: 0.53 Total: -31.89 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 1.88 Total: 41.45 kcal Total: -79.13 5.44 -73.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360898269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.897 kcal (2) G-P(sol) polarization free energy of solvation -79.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds