Wall clock time and date at job start Tue Mar 31 2020 22:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20827 * 120.00294 * 2 1 4 4 O 1.34226 * 120.00053 * 179.97438 * 2 1 3 5 5 C 1.45205 * 117.00289 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47053 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.47005 * 174.99872 * 6 5 4 8 8 C 1.52997 * 109.47330 * 54.99521 * 6 5 4 9 9 O 1.42895 * 109.47456 * 305.00188 * 8 6 5 10 10 N 1.46498 * 109.47297 * 294.99325 * 6 5 4 11 11 C 1.34774 * 120.00348 * 205.00539 * 10 6 5 12 12 O 1.21549 * 119.99904 * 359.97438 * 11 10 6 13 13 C 1.47867 * 120.00079 * 180.02562 * 11 10 6 14 14 C 1.39669 * 120.09925 * 0.02562 * 13 11 10 15 15 C 1.38043 * 120.03800 * 179.97438 * 14 13 11 16 16 C 1.38176 * 120.24168 * 359.75416 * 15 14 13 17 17 C 1.39179 * 120.20357 * 0.50266 * 16 15 14 18 18 S 1.76194 * 120.02163 * 179.76778 * 17 16 15 19 19 C 1.76196 * 100.00182 * 265.25136 * 18 17 16 20 20 H 1.08000 * 120.00393 * 5.12593 * 19 18 17 21 21 C 1.38736 * 120.00006 * 185.12109 * 19 18 17 22 22 N 1.31616 * 119.99932 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99686 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47166 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46857 * 120.00071 * 23 21 19 26 26 H 1.48498 * 109.46876 * 239.99864 * 23 21 19 27 27 C 1.38875 * 119.95687 * 359.49916 * 17 16 15 28 28 H 1.08997 * 109.47333 * 240.00020 * 1 2 3 29 29 H 1.09009 * 109.46878 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47171 * 120.00255 * 1 2 3 31 31 H 1.08995 * 109.47003 * 59.99707 * 5 4 2 32 32 H 1.09001 * 109.46705 * 299.99447 * 5 4 2 33 33 H 1.09004 * 109.46956 * 65.00336 * 8 6 5 34 34 H 1.09003 * 109.47141 * 184.99414 * 8 6 5 35 35 H 0.96700 * 114.00225 * 180.02562 * 9 8 6 36 36 H 0.97008 * 119.99747 * 25.00340 * 10 6 5 37 37 H 1.08002 * 119.98588 * 359.96545 * 14 13 11 38 38 H 1.08000 * 119.87868 * 180.02562 * 15 14 13 39 39 H 1.08005 * 119.89464 * 180.25271 * 16 15 14 40 40 H 0.97004 * 119.99833 * 179.97438 * 22 21 19 41 41 H 1.07997 * 120.12436 * 180.27334 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1781 -1.1624 0.0005 5 6 3.6282 -1.0865 0.0011 6 6 4.2129 -2.5003 0.0023 7 1 5.2978 -2.4449 -0.0869 8 6 3.6436 -3.2887 -1.1790 9 8 2.2159 -3.2625 -1.1254 10 7 3.8597 -3.1738 1.2544 11 6 4.6293 -4.1774 1.7201 12 8 5.6162 -4.5241 1.1010 13 6 4.2725 -4.8575 2.9837 14 6 3.1381 -4.4619 3.6960 15 6 2.8059 -5.0981 4.8752 16 6 3.5894 -6.1308 5.3535 17 6 4.7250 -6.5297 4.6546 18 16 5.7241 -7.8431 5.2720 19 6 6.9340 -6.9172 6.1571 20 1 6.8339 -5.8457 6.2481 21 6 8.0153 -7.5646 6.7371 22 7 8.1370 -8.8705 6.6267 23 14 9.2977 -6.5829 7.6760 24 1 8.9327 -5.1437 7.6546 25 1 9.3541 -7.0590 9.0815 26 1 10.6260 -6.7658 7.0377 27 6 5.0670 -5.8955 3.4674 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0278 -0.0005 30 1 -0.3633 -0.5139 -0.8899 31 1 3.9637 -0.5541 0.8910 32 1 3.9644 -0.5546 -0.8890 33 1 3.9805 -2.8381 -2.1126 34 1 3.9904 -4.3208 -1.1279 35 1 1.7864 -3.7442 -1.8456 36 1 3.0719 -2.8974 1.7484 37 1 2.5205 -3.6577 3.3241 38 1 1.9279 -4.7903 5.4237 39 1 3.3220 -6.6273 6.2746 40 1 8.8933 -9.3230 7.0320 41 1 5.9452 -6.2058 2.9206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362644297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:13 Heat of formation + Delta-G solvation = -148.754756 kcal Electronic energy + Delta-G solvation = -26262.440711 eV Core-core repulsion = 22233.707461 eV Total energy + Delta-G solvation = -4028.733251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.78881 -40.02157 -38.21446 -37.30388 -36.40549 -34.71336 -32.51245 -31.81981 -30.74164 -30.53506 -29.57747 -26.40475 -25.57533 -23.96095 -22.41033 -21.85908 -21.07922 -20.31566 -18.46623 -18.02566 -17.51274 -17.35925 -17.05116 -16.53657 -15.97605 -15.62092 -15.20356 -15.13073 -14.85581 -14.48908 -14.27852 -13.98787 -13.64229 -13.61994 -13.40111 -13.23500 -12.94967 -12.75590 -12.62379 -12.50487 -12.23779 -11.68369 -11.59663 -11.15789 -11.12803 -11.10584 -10.94292 -10.79252 -10.70451 -10.23198 -9.96999 -9.78999 -9.25830 -9.17349 -9.02013 -8.59629 -8.02901 -6.71768 -6.29195 -4.02994 1.15037 1.66593 1.92297 2.38690 2.98065 3.01352 3.19187 3.22331 3.28629 3.46987 3.96369 4.08993 4.21425 4.25866 4.42208 4.65653 4.80176 4.84233 4.87700 4.93706 5.05330 5.07284 5.11202 5.12256 5.24044 5.31494 5.41086 5.47176 5.47771 5.73787 5.86856 5.98148 6.15366 6.24841 6.29211 6.57965 6.63887 6.92659 7.18566 7.40544 7.45803 7.48169 7.57471 8.22634 8.32607 9.16867 10.77579 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018027 B = 0.002378 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.834879 B =11770.575802 C =11883.554275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.455 3.545 3 O -0.523 6.523 4 O -0.323 6.323 5 C 0.061 3.939 6 C 0.152 3.848 7 H 0.122 0.878 8 C 0.064 3.936 9 O -0.549 6.549 10 N -0.719 5.719 11 C 0.566 3.434 12 O -0.537 6.537 13 C -0.155 4.155 14 C -0.087 4.087 15 C -0.141 4.141 16 C -0.054 4.054 17 C -0.107 4.107 18 S -0.036 6.036 19 C -0.518 4.518 20 H 0.076 0.924 21 C 0.073 3.927 22 N -0.870 5.870 23 Si 0.921 3.079 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.279 1.279 27 C -0.018 4.018 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.371 0.629 36 H 0.405 0.595 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.269 0.731 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.443 14.582 -14.372 26.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.299 3.701 3 O -0.413 6.413 4 O -0.238 6.238 5 C -0.013 4.013 6 C 0.047 3.953 7 H 0.140 0.860 8 C -0.015 4.015 9 O -0.353 6.353 10 N -0.372 5.372 11 C 0.355 3.645 12 O -0.415 6.415 13 C -0.160 4.160 14 C -0.106 4.106 15 C -0.161 4.161 16 C -0.076 4.076 17 C -0.218 4.218 18 S 0.199 5.801 19 C -0.666 4.666 20 H 0.094 0.906 21 C -0.136 4.136 22 N -0.505 5.505 23 Si 0.747 3.253 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.204 1.204 27 C -0.040 4.040 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.217 0.783 36 H 0.242 0.758 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.079 0.921 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.337 13.637 -14.347 25.040 hybrid contribution 0.577 1.834 0.376 1.959 sum -14.760 15.471 -13.971 25.542 Atomic orbital electron populations 1.21603 0.87275 1.05522 1.05831 1.23920 0.92312 0.81807 0.72065 1.90700 1.71047 1.33458 1.46080 1.86738 1.20701 1.33294 1.83110 1.23277 0.77818 0.96688 1.03537 1.21223 1.00210 0.89466 0.84451 0.86042 1.22534 0.82358 0.99997 0.96646 1.86640 1.17703 1.77661 1.53299 1.45806 1.30271 1.36698 1.24451 1.18453 0.82206 0.79008 0.84813 1.90767 1.27005 1.64299 1.59436 1.19813 0.98946 1.00856 0.96359 1.21148 0.95509 0.98848 0.95144 1.21059 1.00596 0.97721 0.96712 1.21965 0.93129 0.94136 0.98325 1.22842 0.99425 1.02843 0.96665 1.83607 1.27994 1.04396 1.64115 1.22876 1.09968 0.95845 1.37895 0.90577 1.25008 0.97254 0.95270 0.96092 1.69996 1.30270 1.07593 1.42686 0.86067 0.80312 0.79841 0.79081 1.19500 1.20478 1.20441 1.21941 0.97076 0.91157 0.93813 0.88221 0.88435 0.88212 0.90382 0.89805 0.93034 0.92532 0.78272 0.75845 0.86497 0.85845 0.85068 0.92111 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 10.43 36.00 0.38 -0.29 16 2 C 0.46 4.02 8.07 36.00 0.29 4.31 16 3 O -0.52 -6.42 16.83 -18.75 -0.32 -6.73 16 4 O -0.32 -2.87 7.51 -46.99 -0.35 -3.23 16 5 C 0.06 0.54 5.20 37.16 0.19 0.73 16 6 C 0.15 1.47 2.86 -67.93 -0.19 1.28 16 7 H 0.12 1.21 7.58 -51.93 -0.39 0.82 16 8 C 0.06 0.56 6.85 37.16 0.25 0.81 16 9 O -0.55 -4.43 11.14 -58.59 -0.65 -5.08 16 10 N -0.72 -8.31 4.96 -54.75 -0.27 -8.58 16 11 C 0.57 8.86 7.74 -12.32 -0.10 8.77 16 12 O -0.54 -10.08 16.01 5.32 0.09 -9.99 16 13 C -0.15 -2.59 5.87 -105.00 -0.62 -3.20 16 14 C -0.09 -1.21 9.54 -39.12 -0.37 -1.58 16 15 C -0.14 -2.02 10.02 -39.68 -0.40 -2.42 16 16 C -0.05 -0.97 9.79 -39.25 -0.38 -1.35 16 17 C -0.11 -2.28 5.45 -39.00 -0.21 -2.49 16 18 S -0.04 -0.92 21.40 -107.50 -2.30 -3.22 16 19 C -0.52 -14.62 9.46 30.92 0.29 -14.32 16 20 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 21 C 0.07 2.04 5.49 -17.46 -0.10 1.94 16 22 N -0.87 -25.43 13.22 55.49 0.73 -24.69 16 23 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C -0.02 -0.37 9.34 -38.92 -0.36 -0.73 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.39 8.12 -51.92 -0.42 -0.03 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.37 1.63 9.12 45.56 0.42 2.05 16 36 H 0.41 4.10 6.42 -40.82 -0.26 3.84 16 37 H 0.12 1.19 6.40 -52.49 -0.34 0.85 16 38 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.14 3.02 7.65 -52.49 -0.40 2.62 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -35.66 374.39 -8.11 -43.77 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.32 Total: 4.22 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -1.33 Total: -8.56 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.46 Total: -33.28 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -1.24 Total: -25.03 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.66 -8.11 -43.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362644297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.983 kcal (2) G-P(sol) polarization free energy of solvation -35.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds