Wall clock time and date at job start Tue Mar 31 2020 22:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20827 * 120.00294 * 2 1 4 4 O 1.34226 * 120.00053 * 179.97438 * 2 1 3 5 5 C 1.45205 * 117.00289 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47053 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.47005 * 174.99872 * 6 5 4 8 8 C 1.52997 * 109.47330 * 54.99521 * 6 5 4 9 9 O 1.42895 * 109.47456 * 305.00188 * 8 6 5 10 10 N 1.46498 * 109.47297 * 294.99325 * 6 5 4 11 11 C 1.34774 * 120.00348 * 205.00539 * 10 6 5 12 12 O 1.21549 * 119.99904 * 359.97438 * 11 10 6 13 13 C 1.47867 * 120.00079 * 180.02562 * 11 10 6 14 14 C 1.39669 * 120.09925 * 0.02562 * 13 11 10 15 15 C 1.38043 * 120.03800 * 179.97438 * 14 13 11 16 16 C 1.38176 * 120.24168 * 359.75416 * 15 14 13 17 17 C 1.39179 * 120.20357 * 0.50266 * 16 15 14 18 18 S 1.76194 * 120.02163 * 179.76778 * 17 16 15 19 19 C 1.76196 * 100.00182 * 265.25136 * 18 17 16 20 20 H 1.08000 * 120.00393 * 5.12593 * 19 18 17 21 21 C 1.38736 * 120.00006 * 185.12109 * 19 18 17 22 22 N 1.31616 * 119.99932 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99686 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47166 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46857 * 120.00071 * 23 21 19 26 26 H 1.48498 * 109.46876 * 239.99864 * 23 21 19 27 27 C 1.38875 * 119.95687 * 359.49916 * 17 16 15 28 28 H 1.08997 * 109.47333 * 240.00020 * 1 2 3 29 29 H 1.09009 * 109.46878 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47171 * 120.00255 * 1 2 3 31 31 H 1.08995 * 109.47003 * 59.99707 * 5 4 2 32 32 H 1.09001 * 109.46705 * 299.99447 * 5 4 2 33 33 H 1.09004 * 109.46956 * 65.00336 * 8 6 5 34 34 H 1.09003 * 109.47141 * 184.99414 * 8 6 5 35 35 H 0.96700 * 114.00225 * 180.02562 * 9 8 6 36 36 H 0.97008 * 119.99747 * 25.00340 * 10 6 5 37 37 H 1.08002 * 119.98588 * 359.96545 * 14 13 11 38 38 H 1.08000 * 119.87868 * 180.02562 * 15 14 13 39 39 H 1.08005 * 119.89464 * 180.25271 * 16 15 14 40 40 H 0.97004 * 119.99833 * 179.97438 * 22 21 19 41 41 H 1.07997 * 120.12436 * 180.27334 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1781 -1.1624 0.0005 5 6 3.6282 -1.0865 0.0011 6 6 4.2129 -2.5003 0.0023 7 1 5.2978 -2.4449 -0.0869 8 6 3.6436 -3.2887 -1.1790 9 8 2.2159 -3.2625 -1.1254 10 7 3.8597 -3.1738 1.2544 11 6 4.6293 -4.1774 1.7201 12 8 5.6162 -4.5241 1.1010 13 6 4.2725 -4.8575 2.9837 14 6 3.1381 -4.4619 3.6960 15 6 2.8059 -5.0981 4.8752 16 6 3.5894 -6.1308 5.3535 17 6 4.7250 -6.5297 4.6546 18 16 5.7241 -7.8431 5.2720 19 6 6.9340 -6.9172 6.1571 20 1 6.8339 -5.8457 6.2481 21 6 8.0153 -7.5646 6.7371 22 7 8.1370 -8.8705 6.6267 23 14 9.2977 -6.5829 7.6760 24 1 8.9327 -5.1437 7.6546 25 1 9.3541 -7.0590 9.0815 26 1 10.6260 -6.7658 7.0377 27 6 5.0670 -5.8955 3.4674 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0278 -0.0005 30 1 -0.3633 -0.5139 -0.8899 31 1 3.9637 -0.5541 0.8910 32 1 3.9644 -0.5546 -0.8890 33 1 3.9805 -2.8381 -2.1126 34 1 3.9904 -4.3208 -1.1279 35 1 1.7864 -3.7442 -1.8456 36 1 3.0719 -2.8974 1.7484 37 1 2.5205 -3.6577 3.3241 38 1 1.9279 -4.7903 5.4237 39 1 3.3220 -6.6273 6.2746 40 1 8.8933 -9.3230 7.0320 41 1 5.9452 -6.2058 2.9206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362644297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:11 Heat of formation + Delta-G solvation = -174.238139 kcal Electronic energy + Delta-G solvation = -26263.545754 eV Core-core repulsion = 22233.707461 eV Total energy + Delta-G solvation = -4029.838293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61456 -41.09640 -39.38513 -38.26660 -37.08930 -35.67092 -34.65916 -32.91791 -31.95145 -31.40608 -30.43383 -27.75012 -27.07004 -25.19416 -23.73219 -22.64354 -22.05069 -21.35414 -20.05901 -19.10223 -18.74405 -18.04913 -17.87953 -17.33458 -17.13570 -16.94200 -16.70831 -16.43560 -16.17765 -15.74369 -15.47173 -15.04998 -14.80526 -14.62696 -14.48827 -14.22691 -13.86095 -13.74991 -13.39745 -13.26926 -13.19942 -13.04940 -13.02708 -12.98803 -12.65765 -12.41558 -12.34090 -11.74418 -11.66772 -11.49510 -11.27371 -11.17044 -10.82524 -10.72960 -10.31540 -9.91479 -9.70014 -8.80806 -8.39943 -6.19687 -0.19058 0.25540 1.28585 1.29246 1.35746 1.45911 1.63057 1.74992 1.79821 2.01620 2.23739 2.79585 2.93137 3.31960 3.41475 3.49502 3.65526 3.82628 3.94272 3.99981 4.02423 4.22361 4.35250 4.36325 4.44060 4.47389 4.55055 4.62335 4.66968 4.70780 4.76426 4.92407 5.03329 5.21313 5.28704 5.32797 5.38371 5.50320 5.56900 5.85795 6.15521 6.41018 6.82941 6.96800 7.00653 7.08032 8.67342 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018027 B = 0.002378 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.834879 B =11770.575802 C =11883.554275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.453 3.547 3 O -0.564 6.564 4 O -0.323 6.323 5 C 0.066 3.934 6 C 0.147 3.853 7 H 0.116 0.884 8 C 0.070 3.930 9 O -0.556 6.556 10 N -0.697 5.697 11 C 0.566 3.434 12 O -0.578 6.578 13 C -0.157 4.157 14 C -0.063 4.063 15 C -0.121 4.121 16 C -0.062 4.062 17 C -0.129 4.129 18 S -0.095 6.095 19 C -0.534 4.534 20 H 0.067 0.933 21 C 0.019 3.981 22 N -0.906 5.906 23 Si 0.992 3.008 24 H -0.266 1.266 25 H -0.265 1.265 26 H -0.272 1.272 27 C -0.043 4.043 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.389 0.611 36 H 0.416 0.584 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.135 0.865 40 H 0.274 0.726 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.234 17.398 -14.491 29.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.300 3.700 3 O -0.456 6.456 4 O -0.238 6.238 5 C -0.009 4.009 6 C 0.043 3.957 7 H 0.134 0.866 8 C -0.009 4.009 9 O -0.363 6.363 10 N -0.350 5.350 11 C 0.355 3.645 12 O -0.458 6.458 13 C -0.162 4.162 14 C -0.081 4.081 15 C -0.140 4.140 16 C -0.083 4.083 17 C -0.240 4.240 18 S 0.140 5.860 19 C -0.681 4.681 20 H 0.085 0.915 21 C -0.186 4.186 22 N -0.542 5.542 23 Si 0.814 3.186 24 H -0.191 1.191 25 H -0.190 1.190 26 H -0.198 1.198 27 C -0.065 4.065 28 H 0.136 0.864 29 H 0.120 0.880 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.237 0.763 36 H 0.254 0.746 37 H 0.185 0.815 38 H 0.192 0.808 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.189 16.459 -14.487 28.489 hybrid contribution 1.255 1.046 0.290 1.659 sum -16.935 17.505 -14.197 28.192 Atomic orbital electron populations 1.21723 0.83923 1.06473 1.07500 1.24769 0.93729 0.80976 0.70554 1.90691 1.72094 1.34720 1.48127 1.86746 1.20497 1.33565 1.82983 1.23185 0.78133 0.95594 1.03961 1.21378 1.00307 0.90162 0.83875 0.86642 1.22385 0.82932 0.98584 0.96999 1.86579 1.17042 1.78074 1.54568 1.45642 1.29510 1.35016 1.24835 1.18343 0.82135 0.79657 0.84387 1.90754 1.28905 1.65739 1.60432 1.19940 0.99396 0.99779 0.97118 1.21676 0.93865 0.98672 0.93912 1.21540 1.00787 0.95211 0.96465 1.22078 0.92395 0.95425 0.98422 1.22494 1.00540 1.02949 0.98023 1.83483 1.29337 1.08460 1.64728 1.23083 1.10986 0.95539 1.38529 0.91521 1.26005 0.99337 0.96349 0.96913 1.70111 1.31174 1.09225 1.43720 0.84998 0.77286 0.78265 0.78036 1.19067 1.19029 1.19756 1.21624 0.97447 0.93379 0.94051 0.86376 0.87953 0.86393 0.90640 0.88843 0.90812 0.94801 0.76257 0.74605 0.81471 0.80762 0.84667 0.91697 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 10.43 71.23 0.74 -0.04 16 2 C 0.45 6.76 8.07 71.23 0.57 7.33 16 3 O -0.56 -12.87 16.83 21.96 0.37 -12.50 16 4 O -0.32 -4.74 7.51 -43.98 -0.33 -5.07 16 5 C 0.07 1.00 5.20 71.98 0.37 1.38 16 6 C 0.15 2.61 2.86 44.99 0.13 2.74 16 7 H 0.12 2.24 7.58 -2.38 -0.02 2.22 16 8 C 0.07 1.10 6.85 71.98 0.49 1.59 16 9 O -0.56 -7.32 11.14 -126.65 -1.41 -8.73 16 10 N -0.70 -14.58 4.96 -445.40 -2.21 -16.79 16 11 C 0.57 17.39 7.74 86.79 0.67 18.06 16 12 O -0.58 -22.37 16.01 -3.87 -0.06 -22.43 16 13 C -0.16 -5.12 5.87 -20.11 -0.12 -5.23 16 14 C -0.06 -1.47 9.54 22.57 0.22 -1.26 16 15 C -0.12 -2.94 10.02 22.21 0.22 -2.72 16 16 C -0.06 -2.16 9.79 22.48 0.22 -1.94 16 17 C -0.13 -5.69 5.45 22.65 0.12 -5.56 16 18 S -0.09 -5.19 21.40 -56.49 -1.21 -6.40 16 19 C -0.53 -31.46 9.46 67.94 0.64 -30.82 16 20 H 0.07 3.90 7.79 -2.91 -0.02 3.88 16 21 C 0.02 1.10 5.49 84.84 0.47 1.57 16 22 N -0.91 -54.78 13.22 21.64 0.29 -54.49 16 23 Si 0.99 44.87 29.55 68.60 2.03 46.90 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 C -0.04 -1.82 9.34 22.70 0.21 -1.61 16 28 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.10 0.51 8.12 -2.38 -0.02 0.49 16 30 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.08 1.21 8.13 -2.39 -0.02 1.19 16 32 H 0.09 1.28 8.13 -2.39 -0.02 1.26 16 33 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.39 2.25 9.12 -74.06 -0.68 1.58 16 36 H 0.42 6.75 6.42 -92.70 -0.60 6.16 16 37 H 0.17 2.29 6.40 -2.91 -0.02 2.27 16 38 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.10 5.01 7.65 -2.91 -0.02 4.99 16 Total: -1.00 -83.56 374.39 2.25 -81.31 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -0.18 Total: 14.71 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 4.97 Total: -16.51 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -1.92 Total: -71.28 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -1.43 Total: -48.74 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: -5.19 SS G_CDS: -1.21 Total: -6.40 kcal Total: -83.56 2.25 -81.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362644297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.925 kcal (2) G-P(sol) polarization free energy of solvation -83.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds