Wall clock time and date at job start Tue Mar 31 2020 22:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00044 * 2 1 4 4 O 1.20826 * 120.00237 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00041 * 180.02562 * 3 2 1 6 6 H 1.09002 * 115.56301 * 34.30694 * 5 3 2 7 7 C 1.53003 * 117.49704 * 248.62300 * 5 3 2 8 8 C 1.53001 * 117.49762 * 180.02562 * 5 3 2 9 9 H 1.09005 * 117.51780 * 214.96704 * 8 5 3 10 10 C 1.52998 * 117.50007 * 359.97438 * 8 5 3 11 11 N 1.46503 * 109.46982 * 185.01562 * 10 8 5 12 12 S 1.65603 * 119.99943 * 165.00494 * 11 10 8 13 13 O 1.42101 * 106.39649 * 311.45491 * 12 11 10 14 14 O 1.42098 * 106.40113 * 178.54187 * 12 11 10 15 15 C 1.76201 * 107.21765 * 64.99723 * 12 11 10 16 16 C 1.38635 * 119.74932 * 90.00578 * 15 12 11 17 17 C 1.37612 * 120.24854 * 180.02562 * 16 15 12 18 18 C 1.40720 * 119.74269 * 359.97438 * 17 16 15 19 19 C 1.41400 * 120.24188 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00210 * 335.72298 * 19 18 17 21 21 C 1.39941 * 119.99791 * 155.71785 * 19 18 17 22 22 N 1.30825 * 120.00491 * 342.30067 * 21 19 18 23 23 Si 1.86803 * 119.99860 * 162.29959 * 21 19 18 24 24 H 1.48500 * 109.46973 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47072 * 299.99828 * 23 21 19 26 26 H 1.48502 * 109.47251 * 59.99899 * 23 21 19 27 27 C 1.40712 * 119.51346 * 0.27544 * 18 17 16 28 28 C 1.37613 * 119.74352 * 359.44423 * 27 18 17 29 29 H 1.09006 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46738 * 299.99675 * 1 2 3 31 31 H 1.08994 * 109.47220 * 59.99853 * 1 2 3 32 32 H 1.09001 * 117.50017 * 145.02042 * 7 5 3 33 33 H 1.09003 * 117.51852 * 359.97438 * 7 5 3 34 34 H 1.08998 * 109.47012 * 65.01711 * 10 8 5 35 35 H 1.08993 * 109.47094 * 305.01546 * 10 8 5 36 36 H 0.97006 * 120.00074 * 344.99753 * 11 10 8 37 37 H 1.07999 * 119.87584 * 359.97438 * 16 15 12 38 38 H 1.08001 * 120.13103 * 179.97438 * 17 16 15 39 39 H 0.96998 * 120.00304 * 180.02562 * 22 21 19 40 40 H 1.08003 * 120.12551 * 179.72915 * 27 18 17 41 41 H 1.08001 * 119.87710 * 180.26899 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0784 0.4884 -0.5552 7 6 4.2464 1.8055 1.2631 8 6 4.2008 2.6671 0.0001 9 1 5.1303 2.7972 -0.5543 10 6 3.2588 3.8727 0.0006 11 7 4.0424 5.1047 -0.1196 12 16 3.2931 6.5272 -0.5164 13 8 2.4730 6.2479 -1.6429 14 8 4.3039 7.5259 -0.5195 15 6 2.2011 6.9283 0.8069 16 6 2.6564 7.7004 1.8645 17 6 1.8125 8.0194 2.9037 18 6 0.4828 7.5591 2.8896 19 6 -0.3935 7.8811 3.9516 20 1 0.0047 8.1214 4.9264 21 6 -1.7767 7.8885 3.7396 22 7 -2.2516 7.9441 2.5218 23 14 -2.9452 7.8189 5.1954 24 1 -4.3472 7.8385 4.7062 25 1 -2.7065 6.5699 5.9624 26 1 -2.7108 8.9923 6.0748 27 6 0.0332 6.7718 1.8136 28 6 0.8929 6.4699 0.7824 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 5.2058 1.3684 1.5398 33 1 3.6056 2.0981 2.0949 34 1 2.6931 3.8913 0.9321 35 1 2.5705 3.7963 -0.8410 36 1 5.0002 5.0872 0.0334 37 1 3.6775 8.0522 1.8733 38 1 2.1694 8.6207 3.7268 39 1 -3.2104 7.9496 2.3749 40 1 -0.9842 6.4096 1.7949 41 1 0.5488 5.8694 -0.0467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365735465.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:31 Heat of formation + Delta-G solvation = -120.052289 kcal Electronic energy + Delta-G solvation = -27158.520465 eV Core-core repulsion = 23131.031847 eV Total energy + Delta-G solvation = -4027.488618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.80685 -38.09789 -37.50640 -36.40605 -36.13811 -35.05023 -34.04502 -33.94692 -30.19666 -29.39894 -28.38195 -26.26594 -25.75933 -24.48830 -21.61249 -21.37384 -21.06009 -20.41847 -18.72208 -17.98397 -17.55811 -17.06102 -16.79420 -16.48366 -16.21049 -15.66329 -15.45044 -14.93793 -14.33725 -14.05902 -13.73035 -13.57682 -13.31216 -13.26424 -13.15323 -12.94246 -12.38218 -12.15593 -12.12295 -11.91446 -11.68530 -11.41282 -11.34149 -11.30635 -11.23109 -11.18567 -10.91745 -10.83234 -10.72159 -10.64674 -10.39904 -10.25848 -9.69213 -9.55213 -9.43715 -8.92993 -7.90000 -7.63327 -7.08682 -4.75024 1.32760 1.98485 2.32378 2.49202 2.89996 2.91867 2.96148 2.99325 3.42643 3.69058 3.80994 4.26545 4.39099 4.47165 4.53647 4.62173 4.79577 4.99191 5.08848 5.11124 5.26688 5.37458 5.43460 5.47130 5.50014 5.71620 5.89392 6.02850 6.13172 6.21509 6.27659 6.40003 6.73820 6.77076 6.97890 7.11228 7.36749 7.41318 7.48933 7.66472 7.71222 7.82449 8.02614 8.37835 8.56689 8.71263 9.82869 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009236 B = 0.004045 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.755096 B = 6921.049937 C = 9001.369693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.483 3.517 4 O -0.487 6.487 5 C -0.164 4.164 6 H 0.138 0.862 7 C -0.144 4.144 8 C -0.120 4.120 9 H 0.127 0.873 10 C 0.154 3.846 11 N -1.128 6.128 12 S 2.695 3.305 13 O -0.983 6.983 14 O -0.988 6.988 15 C -0.786 4.786 16 C 0.002 3.998 17 C -0.241 4.241 18 C 0.141 3.859 19 C -0.438 4.438 20 H 0.086 0.914 21 C 0.073 3.927 22 N -0.766 5.766 23 Si 0.917 3.083 24 H -0.274 1.274 25 H -0.260 1.260 26 H -0.261 1.261 27 C -0.183 4.183 28 C -0.012 4.012 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.408 0.592 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.289 0.711 40 H 0.121 0.879 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.010 -15.328 -1.432 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.325 3.675 4 O -0.373 6.373 5 C -0.183 4.183 6 H 0.156 0.844 7 C -0.180 4.180 8 C -0.139 4.139 9 H 0.145 0.855 10 C 0.028 3.972 11 N -0.885 5.885 12 S 2.794 3.206 13 O -0.973 6.973 14 O -0.978 6.978 15 C -0.882 4.882 16 C -0.018 4.018 17 C -0.261 4.261 18 C 0.137 3.863 19 C -0.466 4.466 20 H 0.104 0.896 21 C -0.150 4.150 22 N -0.388 5.388 23 Si 0.740 3.260 24 H -0.199 1.199 25 H -0.184 1.184 26 H -0.186 1.186 27 C -0.204 4.204 28 C -0.032 4.032 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.240 0.760 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.139 0.861 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.488 -14.553 -2.437 16.119 hybrid contribution -0.799 -0.165 1.303 1.538 sum 5.689 -14.719 -1.134 15.821 Atomic orbital electron populations 1.23302 0.75957 1.03571 1.03077 1.86450 1.23613 1.33318 1.84239 1.22676 0.90423 0.81514 0.72893 1.90780 1.66746 1.35706 1.44067 1.21811 0.88646 1.00949 1.06942 0.84407 1.23252 1.02156 1.01480 0.91161 1.22709 1.00719 0.89442 1.01066 0.85535 1.20970 0.91639 0.80707 1.03878 1.55815 1.18765 1.24088 1.89816 1.01136 0.73214 0.71631 0.74631 1.93487 1.69490 1.84674 1.49649 1.93484 1.59416 1.56829 1.88108 1.29145 1.10502 1.26529 1.22056 1.20150 0.97320 0.92497 0.91824 1.21012 0.95984 1.08639 1.00471 1.17846 0.91201 0.85928 0.91332 1.19890 0.90665 1.38189 0.97832 0.89558 1.26128 0.99715 0.91852 0.97266 1.69823 1.16230 1.30470 1.22263 0.86211 0.78309 0.80369 0.81102 1.19918 1.18438 1.18572 1.21326 0.99843 1.02993 0.96221 1.20282 0.91419 0.95019 0.96474 0.88196 0.91569 0.91628 0.86886 0.87414 0.90604 0.88921 0.75989 0.87848 0.88266 0.89943 0.86080 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.00 10.57 -39.24 -0.41 -4.42 16 3 C 0.48 6.02 7.72 36.01 0.28 6.30 16 4 O -0.49 -7.77 12.86 -18.75 -0.24 -8.01 16 5 C -0.16 -1.53 6.30 -91.77 -0.58 -2.11 16 6 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 7 C -0.14 -1.22 9.88 -26.75 -0.26 -1.48 16 8 C -0.12 -1.22 5.83 -90.64 -0.53 -1.75 16 9 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 10 C 0.15 2.27 4.77 -4.04 -0.02 2.25 16 11 N -1.13 -17.09 6.00 -10.61 -0.06 -17.15 16 12 S 2.70 54.01 5.73 -107.50 -0.62 53.39 16 13 O -0.98 -22.24 16.73 -57.17 -0.96 -23.19 16 14 O -0.99 -21.38 17.26 -57.17 -0.99 -22.36 16 15 C -0.79 -18.01 5.97 -39.29 -0.23 -18.24 16 16 C 0.00 0.05 9.49 -39.66 -0.38 -0.33 16 17 C -0.24 -5.83 9.80 -38.87 -0.38 -6.21 16 18 C 0.14 3.66 5.57 -106.82 -0.60 3.06 16 19 C -0.44 -10.99 9.05 -37.74 -0.34 -11.33 16 20 H 0.09 2.03 7.91 -52.48 -0.41 1.62 16 21 C 0.07 1.71 5.14 -17.34 -0.09 1.63 16 22 N -0.77 -18.86 10.95 55.55 0.61 -18.25 16 23 Si 0.92 17.36 29.59 -169.99 -5.03 12.33 16 24 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 25 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 26 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 27 C -0.18 -4.76 8.70 -38.88 -0.34 -5.10 16 28 C -0.01 -0.28 9.49 -39.66 -0.38 -0.66 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.11 1.04 8.03 -51.93 -0.42 0.63 16 34 H 0.08 1.23 7.30 -51.93 -0.38 0.85 16 35 H 0.09 1.56 6.53 -51.93 -0.34 1.22 16 36 H 0.41 4.88 8.65 -34.48 -0.30 4.58 16 37 H 0.10 2.13 7.60 -52.49 -0.40 1.74 16 38 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 39 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 40 H 0.12 3.19 6.16 -52.48 -0.32 2.86 16 41 H 0.10 2.42 7.60 -52.49 -0.40 2.02 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -33.06 364.25 -10.05 -43.11 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.06 Total: 11.67 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: -2.78 Total: -32.60 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.54 Total: -35.40 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -2.60 Total: -57.99 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: 54.01 SS G_CDS: -0.62 Total: 53.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.06 -10.05 -43.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365735465.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.940 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds