Wall clock time and date at job start Tue Mar 31 2020 22:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00044 * 2 1 4 4 O 1.20826 * 120.00237 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00041 * 180.02562 * 3 2 1 6 6 H 1.09002 * 115.56301 * 34.30694 * 5 3 2 7 7 C 1.53003 * 117.49704 * 248.62300 * 5 3 2 8 8 C 1.53001 * 117.49762 * 180.02562 * 5 3 2 9 9 H 1.09005 * 117.51780 * 214.96704 * 8 5 3 10 10 C 1.52998 * 117.50007 * 359.97438 * 8 5 3 11 11 N 1.46503 * 109.46982 * 185.01562 * 10 8 5 12 12 S 1.65603 * 119.99943 * 165.00494 * 11 10 8 13 13 O 1.42101 * 106.39649 * 311.45491 * 12 11 10 14 14 O 1.42098 * 106.40113 * 178.54187 * 12 11 10 15 15 C 1.76201 * 107.21765 * 64.99723 * 12 11 10 16 16 C 1.38635 * 119.74932 * 90.00578 * 15 12 11 17 17 C 1.37612 * 120.24854 * 180.02562 * 16 15 12 18 18 C 1.40720 * 119.74269 * 359.97438 * 17 16 15 19 19 C 1.41400 * 120.24188 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00210 * 335.72298 * 19 18 17 21 21 C 1.39941 * 119.99791 * 155.71785 * 19 18 17 22 22 N 1.30825 * 120.00491 * 342.30067 * 21 19 18 23 23 Si 1.86803 * 119.99860 * 162.29959 * 21 19 18 24 24 H 1.48500 * 109.46973 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47072 * 299.99828 * 23 21 19 26 26 H 1.48502 * 109.47251 * 59.99899 * 23 21 19 27 27 C 1.40712 * 119.51346 * 0.27544 * 18 17 16 28 28 C 1.37613 * 119.74352 * 359.44423 * 27 18 17 29 29 H 1.09006 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46738 * 299.99675 * 1 2 3 31 31 H 1.08994 * 109.47220 * 59.99853 * 1 2 3 32 32 H 1.09001 * 117.50017 * 145.02042 * 7 5 3 33 33 H 1.09003 * 117.51852 * 359.97438 * 7 5 3 34 34 H 1.08998 * 109.47012 * 65.01711 * 10 8 5 35 35 H 1.08993 * 109.47094 * 305.01546 * 10 8 5 36 36 H 0.97006 * 120.00074 * 344.99753 * 11 10 8 37 37 H 1.07999 * 119.87584 * 359.97438 * 16 15 12 38 38 H 1.08001 * 120.13103 * 179.97438 * 17 16 15 39 39 H 0.96998 * 120.00304 * 180.02562 * 22 21 19 40 40 H 1.08003 * 120.12551 * 179.72915 * 27 18 17 41 41 H 1.08001 * 119.87710 * 180.26899 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0784 0.4884 -0.5552 7 6 4.2464 1.8055 1.2631 8 6 4.2008 2.6671 0.0001 9 1 5.1303 2.7972 -0.5543 10 6 3.2588 3.8727 0.0006 11 7 4.0424 5.1047 -0.1196 12 16 3.2931 6.5272 -0.5164 13 8 2.4730 6.2479 -1.6429 14 8 4.3039 7.5259 -0.5195 15 6 2.2011 6.9283 0.8069 16 6 2.6564 7.7004 1.8645 17 6 1.8125 8.0194 2.9037 18 6 0.4828 7.5591 2.8896 19 6 -0.3935 7.8811 3.9516 20 1 0.0047 8.1214 4.9264 21 6 -1.7767 7.8885 3.7396 22 7 -2.2516 7.9441 2.5218 23 14 -2.9452 7.8189 5.1954 24 1 -4.3472 7.8385 4.7062 25 1 -2.7065 6.5699 5.9624 26 1 -2.7108 8.9923 6.0748 27 6 0.0332 6.7718 1.8136 28 6 0.8929 6.4699 0.7824 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 5.2058 1.3684 1.5398 33 1 3.6056 2.0981 2.0949 34 1 2.6931 3.8913 0.9321 35 1 2.5705 3.7963 -0.8410 36 1 5.0002 5.0872 0.0334 37 1 3.6775 8.0522 1.8733 38 1 2.1694 8.6207 3.7268 39 1 -3.2104 7.9496 2.3749 40 1 -0.9842 6.4096 1.7949 41 1 0.5488 5.8694 -0.0467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365735465.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:30 Heat of formation + Delta-G solvation = -142.515432 kcal Electronic energy + Delta-G solvation = -27159.494540 eV Core-core repulsion = 23131.031847 eV Total energy + Delta-G solvation = -4028.462693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.74698 -39.40081 -38.96262 -38.12968 -37.15467 -36.80142 -35.82660 -35.22131 -32.08726 -31.31033 -29.21643 -27.63894 -27.37377 -25.30044 -23.33617 -22.97669 -22.33595 -21.38260 -20.27279 -19.43606 -18.94114 -18.62199 -18.19304 -17.65425 -17.34797 -17.23502 -16.73601 -16.10171 -15.87503 -15.55359 -15.23352 -14.95293 -14.72530 -14.59376 -14.25595 -14.13274 -13.99856 -13.87276 -13.55041 -13.16140 -13.12581 -13.02620 -12.97126 -12.93606 -12.89422 -12.56961 -12.34054 -12.05200 -11.82499 -11.63867 -11.55729 -11.50171 -11.38184 -11.22784 -11.14159 -10.29984 -9.80823 -9.56775 -8.88422 -6.66981 -0.30858 0.47412 1.04077 1.04820 1.33346 1.42844 1.48590 1.68418 2.09326 2.22691 2.50687 2.73569 2.92287 3.43988 3.52018 3.68641 3.72808 3.78370 4.00881 4.25677 4.28353 4.29847 4.30607 4.32809 4.55659 4.66875 4.72001 4.83544 4.85986 4.89767 4.93485 5.01137 5.09485 5.22442 5.26860 5.40690 5.50546 5.57885 5.75093 5.91071 6.13042 6.27187 6.47222 6.66120 6.72640 6.79445 8.06856 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009236 B = 0.004045 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.755096 B = 6921.049937 C = 9001.369693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.475 3.525 4 O -0.534 6.534 5 C -0.160 4.160 6 H 0.176 0.824 7 C -0.126 4.126 8 C -0.129 4.129 9 H 0.160 0.840 10 C 0.152 3.848 11 N -1.105 6.105 12 S 2.726 3.274 13 O -1.009 7.009 14 O -0.998 6.998 15 C -0.798 4.798 16 C 0.000 4.000 17 C -0.257 4.257 18 C 0.112 3.888 19 C -0.467 4.467 20 H 0.095 0.905 21 C 0.032 3.968 22 N -0.801 5.801 23 Si 0.994 3.006 24 H -0.265 1.265 25 H -0.256 1.256 26 H -0.252 1.252 27 C -0.208 4.208 28 C -0.018 4.018 29 H 0.136 0.864 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.427 0.573 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.298 0.702 40 H 0.107 0.893 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.816 -16.928 -0.668 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.320 3.680 4 O -0.423 6.423 5 C -0.179 4.179 6 H 0.193 0.807 7 C -0.163 4.163 8 C -0.149 4.149 9 H 0.178 0.822 10 C 0.026 3.974 11 N -0.867 5.867 12 S 2.821 3.179 13 O -0.999 6.999 14 O -0.989 6.989 15 C -0.891 4.891 16 C -0.020 4.020 17 C -0.277 4.277 18 C 0.109 3.891 19 C -0.494 4.494 20 H 0.113 0.887 21 C -0.187 4.187 22 N -0.424 5.424 23 Si 0.813 3.187 24 H -0.189 1.189 25 H -0.180 1.180 26 H -0.176 1.176 27 C -0.229 4.229 28 C -0.038 4.038 29 H 0.154 0.846 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.171 0.829 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.264 0.736 37 H 0.148 0.852 38 H 0.133 0.867 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.305 -16.151 -1.655 18.236 hybrid contribution -1.330 0.263 0.980 1.673 sum 6.974 -15.888 -0.675 17.365 Atomic orbital electron populations 1.23511 0.75168 1.05635 1.02164 1.86456 1.24496 1.32673 1.83730 1.23471 0.91917 0.81131 0.71513 1.90779 1.68043 1.37161 1.46317 1.22045 0.86510 1.01227 1.08147 0.80707 1.23390 1.03241 0.99845 0.89816 1.22693 1.00915 0.87723 1.03538 0.82212 1.20926 0.92435 0.82281 1.01747 1.55265 1.19660 1.22612 1.89211 1.00207 0.72305 0.72067 0.73283 1.93457 1.70589 1.85299 1.50524 1.93460 1.59157 1.58291 1.87983 1.29646 1.10648 1.25962 1.22830 1.20473 0.98366 0.91881 0.91276 1.21275 0.95698 1.09101 1.01602 1.18197 0.92492 0.86589 0.91851 1.20230 0.91839 1.39258 0.98026 0.88679 1.27096 1.00907 0.90543 1.00155 1.69875 1.17184 1.30783 1.24530 0.85064 0.75965 0.80603 0.77083 1.18945 1.17983 1.17584 1.21321 0.99643 1.04378 0.97527 1.20372 0.92248 0.95061 0.96130 0.84619 0.92728 0.92392 0.82919 0.89248 0.92811 0.91413 0.73584 0.85221 0.86700 0.89095 0.87540 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -7.69 10.57 -51.35 -0.54 -8.24 16 3 C 0.47 11.73 7.72 71.24 0.55 12.28 16 4 O -0.53 -17.90 12.86 21.96 0.28 -17.62 16 5 C -0.16 -2.58 6.30 -11.54 -0.07 -2.66 16 6 H 0.18 1.55 8.14 -2.39 -0.02 1.53 16 7 C -0.13 -1.76 9.88 30.58 0.30 -1.45 16 8 C -0.13 -2.31 5.83 -10.81 -0.06 -2.37 16 9 H 0.16 1.81 8.14 -2.38 -0.02 1.79 16 10 C 0.15 4.45 4.77 86.38 0.41 4.87 16 11 N -1.11 -32.16 6.00 -187.49 -1.12 -33.28 16 12 S 2.73 108.49 5.73 -56.49 -0.32 108.17 16 13 O -1.01 -46.18 16.73 -128.00 -2.14 -48.33 16 14 O -1.00 -41.88 17.26 -128.00 -2.21 -44.09 16 15 C -0.80 -37.23 5.97 22.46 0.13 -37.10 16 16 C 0.00 -0.01 9.49 22.22 0.21 0.20 16 17 C -0.26 -12.66 9.80 22.73 0.22 -12.44 16 18 C 0.11 6.06 5.57 -21.29 -0.12 5.94 16 19 C -0.47 -24.03 9.05 23.46 0.21 -23.82 16 20 H 0.10 4.55 7.91 -2.91 -0.02 4.52 16 21 C 0.03 1.54 5.14 85.26 0.44 1.98 16 22 N -0.80 -40.78 10.95 21.83 0.24 -40.54 16 23 Si 0.99 35.53 29.59 68.60 2.03 37.56 16 24 H -0.27 -8.99 7.11 99.48 0.71 -8.28 16 25 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 26 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 27 C -0.21 -11.42 8.70 22.73 0.20 -11.22 16 28 C -0.02 -0.92 9.49 22.22 0.21 -0.71 16 29 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 32 H 0.15 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.62 8.03 -2.39 -0.02 1.60 16 34 H 0.05 1.81 7.30 -2.39 -0.02 1.80 16 35 H 0.07 2.35 6.53 -2.39 -0.02 2.34 16 36 H 0.43 9.10 8.65 -96.74 -0.84 8.26 16 37 H 0.13 5.19 7.60 -2.91 -0.02 5.17 16 38 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 39 H 0.30 13.55 8.30 -92.71 -0.77 12.79 16 40 H 0.11 6.01 6.16 -2.91 -0.02 5.99 16 41 H 0.10 5.13 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -75.20 364.25 0.28 -74.92 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: 0.24 Total: 36.23 kcal Atomic # 6 Polarization: -68.62 SS G_CDS: 3.83 Total: -64.79 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -0.89 Total: -73.82 kcal Atomic # 8 Polarization: -113.66 SS G_CDS: -4.61 Total: -118.27 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Atomic # 16 Polarization: 108.49 SS G_CDS: -0.32 Total: 108.17 kcal Total: -75.20 0.28 -74.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365735465.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.593 kcal (2) G-P(sol) polarization free energy of solvation -75.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds