Wall clock time and date at job start Tue Mar 31 2020 22:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47351 * 2 1 4 4 C 1.50701 * 109.47003 * 120.00160 * 2 1 3 5 5 H 1.08000 * 119.99924 * 120.00322 * 4 2 1 6 6 C 1.37875 * 120.00261 * 299.99933 * 4 2 1 7 7 N 1.31517 * 119.99624 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00278 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47091 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46905 * 119.99710 * 8 6 4 11 11 H 1.48492 * 109.47076 * 240.00035 * 8 6 4 12 12 N 1.46498 * 109.47183 * 239.99905 * 2 1 3 13 13 C 1.34779 * 120.00066 * 85.00025 * 12 2 1 14 14 O 1.21287 * 119.99458 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00253 * 180.02562 * 13 12 2 16 16 C 1.53006 * 109.46914 * 179.97438 * 15 13 12 17 17 H 1.08999 * 109.53884 * 54.83894 * 16 15 13 18 18 C 1.53824 * 109.53547 * 174.99865 * 16 15 13 19 19 S 1.82106 * 106.86197 * 185.63719 * 18 16 15 20 20 O 1.42097 * 110.76259 * 68.44367 * 19 18 16 21 21 O 1.42092 * 110.76356 * 205.96143 * 19 18 16 22 22 C 1.76700 * 102.90127 * 317.20240 * 19 18 16 23 23 C 1.38245 * 119.07692 * 193.13591 * 22 19 18 24 24 C 1.38170 * 120.28804 * 180.44866 * 23 22 19 25 25 C 1.38293 * 119.67859 * 0.11620 * 24 23 22 26 26 C 1.37798 * 120.16578 * 359.71778 * 25 24 23 27 27 C 1.38422 * 120.42625 * 13.19910 * 22 19 18 28 28 O 1.35152 * 123.56616 * 358.06445 * 27 22 19 29 29 H 1.08994 * 109.47442 * 59.99936 * 1 2 3 30 30 H 1.09001 * 109.47351 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47379 * 299.99845 * 1 2 3 32 32 H 0.96998 * 119.99672 * 179.97438 * 7 6 4 33 33 H 0.96998 * 120.00310 * 265.00248 * 12 2 1 34 34 H 1.08995 * 109.47549 * 60.00132 * 15 13 12 35 35 H 1.09000 * 109.46862 * 299.99812 * 15 13 12 36 36 H 1.09008 * 109.97609 * 304.97403 * 18 16 15 37 37 H 1.08999 * 109.97502 * 66.29504 * 18 16 15 38 38 H 1.08004 * 119.85866 * 0.46250 * 23 22 19 39 39 H 1.07991 * 120.16016 * 180.09866 * 24 23 22 40 40 H 1.07998 * 119.91918 * 179.74080 * 25 24 23 41 41 H 1.07997 * 119.73792 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.1483 -2.2858 3.6037 10 1 3.1472 -0.1859 4.8160 11 1 1.1677 -1.5867 4.8164 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4114 15 6 2.6488 -0.7288 -3.5877 16 6 2.6998 0.2543 -4.7591 17 1 3.2988 1.1215 -4.4813 18 6 3.3286 -0.4349 -5.9821 19 16 3.5094 0.8386 -7.2712 20 8 4.4930 1.7947 -6.9003 21 8 3.5031 0.2505 -8.5646 22 6 1.9790 1.7167 -7.1756 23 6 1.6406 2.5895 -8.1929 24 6 0.4543 3.2960 -8.1391 25 6 -0.3943 3.1281 -7.0602 26 6 -0.0613 2.2562 -6.0464 27 6 1.1319 1.5335 -6.0963 28 8 1.3832 0.6702 -5.0872 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.7089 1.1613 3.4844 33 1 2.2489 -1.6318 -1.1526 34 1 1.9759 -1.5505 -3.8327 35 1 3.6479 -1.1213 -3.3986 36 1 4.3059 -0.8403 -5.7195 37 1 2.6763 -1.2331 -6.3360 38 1 2.3062 2.7197 -9.0334 39 1 0.1913 3.9761 -8.9357 40 1 -1.3205 3.6815 -7.0122 41 1 -0.7290 2.1308 -5.2068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411783506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:38 Heat of formation + Delta-G solvation = -110.429040 kcal Electronic energy + Delta-G solvation = -27274.371917 eV Core-core repulsion = 23247.300595 eV Total energy + Delta-G solvation = -4027.071323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72249 -39.08142 -37.96875 -37.31721 -36.25444 -34.90120 -33.61121 -32.42046 -31.51600 -30.22698 -29.68613 -27.93164 -25.30086 -24.25851 -23.24091 -22.15641 -20.94602 -19.54407 -19.39045 -18.78423 -17.70077 -17.48419 -16.69759 -16.28380 -16.02502 -15.65587 -15.42216 -15.25928 -15.00991 -14.84188 -14.31807 -14.20924 -13.98456 -13.40398 -13.19407 -12.72339 -12.71909 -12.57225 -12.41191 -12.34699 -12.30598 -12.10063 -11.82289 -11.66312 -11.29397 -11.15630 -10.99817 -10.92229 -10.76407 -10.71158 -10.34565 -10.28409 -9.63505 -9.13675 -9.07670 -8.61453 -8.59851 -7.98063 -6.16847 -4.26415 -0.30959 0.61763 1.08592 2.39895 2.57642 3.20264 3.22164 3.25415 3.28305 3.29762 3.30959 3.56071 3.99761 4.11351 4.29248 4.36474 4.47099 4.58058 4.70740 4.81254 4.93932 5.06429 5.12228 5.14759 5.15843 5.37133 5.51473 5.56709 5.60027 5.75649 5.88801 6.15150 6.40766 6.78124 6.92376 7.10701 7.18884 7.39542 7.50049 7.64239 7.86378 8.10512 8.58347 8.72444 9.04131 9.41341 10.89135 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.020768 B = 0.002725 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.930277 B =10273.014317 C =11197.620657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.500 3.500 14 O -0.544 6.544 15 C -0.133 4.133 16 C 0.127 3.873 17 H 0.104 0.896 18 C -0.645 4.645 19 S 2.496 3.504 20 O -0.925 6.925 21 O -0.931 6.931 22 C -0.721 4.721 23 C 0.006 3.994 24 C -0.169 4.169 25 C -0.037 4.037 26 C -0.157 4.157 27 C 0.227 3.773 28 O -0.294 6.294 29 H 0.015 0.985 30 H 0.026 0.974 31 H 0.090 0.910 32 H 0.264 0.736 33 H 0.389 0.611 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 -1.990 -20.359 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.356 5.356 13 C 0.283 3.717 14 O -0.422 6.422 15 C -0.174 4.174 16 C 0.070 3.930 17 H 0.122 0.878 18 C -0.774 4.774 19 S 2.675 3.325 20 O -0.922 6.922 21 O -0.928 6.928 22 C -0.809 4.809 23 C -0.013 4.013 24 C -0.188 4.188 25 C -0.056 4.056 26 C -0.177 4.177 27 C 0.179 3.821 28 O -0.207 6.207 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.221 0.779 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.177 0.823 37 H 0.172 0.828 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.291 -0.940 -20.658 20.720 hybrid contribution -0.172 -1.066 1.298 1.688 sum 1.118 -2.006 -19.360 19.496 Atomic orbital electron populations 1.22069 0.98442 0.99086 1.00937 1.18753 0.91055 0.93993 0.79928 0.93323 1.21249 1.32489 1.13246 0.90326 0.92024 1.24897 0.94798 0.94947 0.99112 1.69913 1.35845 1.22415 1.23827 0.86389 0.78609 0.79502 0.82554 1.19748 1.20860 1.20868 1.46511 1.65085 1.13552 1.10480 1.20130 0.79307 0.87684 0.84539 1.90702 1.50809 1.15878 1.84855 1.21800 1.04972 0.98548 0.92056 1.21965 0.81733 0.97806 0.91540 0.87831 1.31158 1.12610 1.18123 1.15526 1.05503 0.74568 0.76316 0.76085 1.93641 1.56464 1.57960 1.84119 1.93599 1.86250 1.78348 1.34585 1.30052 1.24831 1.21389 1.04655 1.20467 0.95935 0.90439 0.94466 1.21146 0.95260 1.02497 0.99929 1.21213 0.98454 0.94108 0.91781 1.20973 0.97567 0.97786 1.01332 1.18351 0.93353 0.86368 0.84046 1.85425 1.29786 1.57471 1.48018 0.96586 0.95519 0.89187 0.92592 0.77880 0.87528 0.86428 0.82287 0.82817 0.84869 0.84829 0.84557 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.15 0.34 -3.22 16 2 C 0.26 6.50 2.56 -69.09 -0.18 6.32 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -13.76 8.73 -34.44 -0.30 -14.06 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.47 11.32 55.43 0.63 -23.85 16 8 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.71 -13.66 5.07 -54.93 -0.28 -13.94 16 13 C 0.50 9.00 7.68 -10.99 -0.08 8.92 16 14 O -0.54 -12.15 15.10 -8.57 -0.13 -12.28 16 15 C -0.13 -1.53 5.42 -27.88 -0.15 -1.68 16 16 C 0.13 1.50 2.21 -26.30 -0.06 1.45 16 17 H 0.10 1.34 7.94 -51.93 -0.41 0.92 16 18 C -0.64 -5.10 6.14 37.59 0.23 -4.87 16 19 S 2.50 27.23 5.40 -107.50 -0.58 26.65 16 20 O -0.92 -12.86 17.96 -57.50 -1.03 -13.90 16 21 O -0.93 -11.83 17.84 -57.50 -1.03 -12.85 16 22 C -0.72 -8.84 5.71 -39.51 -0.23 -9.06 16 23 C 0.01 0.07 9.56 -39.60 -0.38 -0.31 16 24 C -0.17 -1.62 10.07 -39.59 -0.40 -2.01 16 25 C -0.04 -0.37 10.02 -39.72 -0.40 -0.77 16 26 C -0.16 -1.94 9.90 -39.24 -0.39 -2.33 16 27 C 0.23 3.02 6.52 -39.01 -0.25 2.76 16 28 O -0.29 -4.09 8.72 -31.27 -0.27 -4.36 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 33 H 0.39 6.27 8.54 -40.82 -0.35 5.92 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.16 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.15 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -36.08 358.59 -9.88 -45.97 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.24 Total: 5.18 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.33 Total: -17.21 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.35 Total: -37.78 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -2.46 Total: -43.39 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 27.23 SS G_CDS: -0.58 Total: 26.65 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.08 -9.88 -45.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411783506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.463 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds