Wall clock time and date at job start Tue Mar 31 2020 22:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47351 * 2 1 4 4 C 1.50701 * 109.47003 * 120.00160 * 2 1 3 5 5 H 1.08000 * 119.99924 * 120.00322 * 4 2 1 6 6 C 1.37875 * 120.00261 * 299.99933 * 4 2 1 7 7 N 1.31517 * 119.99624 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00278 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47091 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46905 * 119.99710 * 8 6 4 11 11 H 1.48492 * 109.47076 * 240.00035 * 8 6 4 12 12 N 1.46498 * 109.47183 * 239.99905 * 2 1 3 13 13 C 1.34779 * 120.00066 * 85.00025 * 12 2 1 14 14 O 1.21287 * 119.99458 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00253 * 180.02562 * 13 12 2 16 16 C 1.53006 * 109.46914 * 179.97438 * 15 13 12 17 17 H 1.08999 * 109.53884 * 54.83894 * 16 15 13 18 18 C 1.53824 * 109.53547 * 174.99865 * 16 15 13 19 19 S 1.82106 * 106.86197 * 185.63719 * 18 16 15 20 20 O 1.42097 * 110.76259 * 68.44367 * 19 18 16 21 21 O 1.42092 * 110.76356 * 205.96143 * 19 18 16 22 22 C 1.76700 * 102.90127 * 317.20240 * 19 18 16 23 23 C 1.38245 * 119.07692 * 193.13591 * 22 19 18 24 24 C 1.38170 * 120.28804 * 180.44866 * 23 22 19 25 25 C 1.38293 * 119.67859 * 0.11620 * 24 23 22 26 26 C 1.37798 * 120.16578 * 359.71778 * 25 24 23 27 27 C 1.38422 * 120.42625 * 13.19910 * 22 19 18 28 28 O 1.35152 * 123.56616 * 358.06445 * 27 22 19 29 29 H 1.08994 * 109.47442 * 59.99936 * 1 2 3 30 30 H 1.09001 * 109.47351 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47379 * 299.99845 * 1 2 3 32 32 H 0.96998 * 119.99672 * 179.97438 * 7 6 4 33 33 H 0.96998 * 120.00310 * 265.00248 * 12 2 1 34 34 H 1.08995 * 109.47549 * 60.00132 * 15 13 12 35 35 H 1.09000 * 109.46862 * 299.99812 * 15 13 12 36 36 H 1.09008 * 109.97609 * 304.97403 * 18 16 15 37 37 H 1.08999 * 109.97502 * 66.29504 * 18 16 15 38 38 H 1.08004 * 119.85866 * 0.46250 * 23 22 19 39 39 H 1.07991 * 120.16016 * 180.09866 * 24 23 22 40 40 H 1.07998 * 119.91918 * 179.74080 * 25 24 23 41 41 H 1.07997 * 119.73792 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.1483 -2.2858 3.6037 10 1 3.1472 -0.1859 4.8160 11 1 1.1677 -1.5867 4.8164 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4114 15 6 2.6488 -0.7288 -3.5877 16 6 2.6998 0.2543 -4.7591 17 1 3.2988 1.1215 -4.4813 18 6 3.3286 -0.4349 -5.9821 19 16 3.5094 0.8386 -7.2712 20 8 4.4930 1.7947 -6.9003 21 8 3.5031 0.2505 -8.5646 22 6 1.9790 1.7167 -7.1756 23 6 1.6406 2.5895 -8.1929 24 6 0.4543 3.2960 -8.1391 25 6 -0.3943 3.1281 -7.0602 26 6 -0.0613 2.2562 -6.0464 27 6 1.1319 1.5335 -6.0963 28 8 1.3832 0.6702 -5.0872 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.7089 1.1613 3.4844 33 1 2.2489 -1.6318 -1.1526 34 1 1.9759 -1.5505 -3.8327 35 1 3.6479 -1.1213 -3.3986 36 1 4.3059 -0.8403 -5.7195 37 1 2.6763 -1.2331 -6.3360 38 1 2.3062 2.7197 -9.0334 39 1 0.1913 3.9761 -8.9357 40 1 -1.3205 3.6815 -7.0122 41 1 -0.7290 2.1308 -5.2068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411783506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:37 Heat of formation + Delta-G solvation = -137.860995 kcal Electronic energy + Delta-G solvation = -27275.561456 eV Core-core repulsion = 23247.300595 eV Total energy + Delta-G solvation = -4028.260862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.65279 -40.43051 -38.94405 -38.24343 -37.18449 -36.68711 -34.59471 -34.23635 -32.34991 -31.25296 -31.06078 -29.15631 -27.32674 -25.15386 -24.18309 -23.32239 -22.34138 -21.11847 -20.24267 -19.73425 -19.02055 -18.41312 -17.86961 -17.52951 -17.11352 -16.95577 -16.74197 -16.31633 -16.10150 -15.92496 -15.71052 -15.20547 -14.99647 -14.69006 -14.45413 -14.12774 -13.79677 -13.62496 -13.52768 -13.38000 -13.26612 -13.24504 -13.05343 -12.93856 -12.77540 -12.66184 -12.64275 -12.26533 -12.17384 -12.10808 -11.79166 -11.55588 -11.07472 -10.70444 -10.55143 -10.47828 -9.70151 -9.48710 -8.16830 -6.34127 -1.11145 -0.22892 0.21889 1.44895 1.46210 1.56082 1.57918 1.72328 1.90857 2.33185 2.41764 2.43442 2.59743 2.93961 3.14144 3.32910 3.54962 3.59812 3.73461 3.97849 4.01046 4.18559 4.24018 4.28693 4.33459 4.52867 4.60180 4.74016 4.76286 4.77753 4.88169 4.94243 5.11522 5.12416 5.33076 5.45927 5.63286 5.64287 5.71835 5.93109 6.12103 6.29660 6.75451 7.01326 7.34578 7.63120 8.89625 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.020768 B = 0.002725 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.930277 B =10273.014317 C =11197.620657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.270 3.730 3 H -0.004 1.004 4 C -0.544 4.544 5 H 0.077 0.923 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.257 1.257 10 H -0.286 1.286 11 H -0.281 1.281 12 N -0.706 5.706 13 C 0.491 3.509 14 O -0.595 6.595 15 C -0.119 4.119 16 C 0.112 3.888 17 H 0.083 0.917 18 C -0.615 4.615 19 S 2.504 3.496 20 O -0.963 6.963 21 O -0.952 6.952 22 C -0.736 4.736 23 C -0.015 4.015 24 C -0.165 4.165 25 C -0.034 4.034 26 C -0.185 4.185 27 C 0.204 3.796 28 O -0.314 6.314 29 H 0.010 0.990 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.264 0.736 33 H 0.408 0.592 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.204 0.796 37 H 0.186 0.814 38 H 0.148 0.852 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -4.519 -21.378 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.167 3.833 3 H 0.014 0.986 4 C -0.582 4.582 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.180 1.180 10 H -0.212 1.212 11 H -0.206 1.206 12 N -0.355 5.355 13 C 0.278 3.722 14 O -0.477 6.477 15 C -0.159 4.159 16 C 0.055 3.945 17 H 0.101 0.899 18 C -0.746 4.746 19 S 2.687 3.313 20 O -0.961 6.961 21 O -0.949 6.949 22 C -0.823 4.823 23 C -0.033 4.033 24 C -0.184 4.184 25 C -0.052 4.052 26 C -0.204 4.204 27 C 0.157 3.843 28 O -0.228 6.228 29 H 0.029 0.971 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.159 0.841 35 H 0.182 0.818 36 H 0.221 0.779 37 H 0.204 0.796 38 H 0.166 0.834 39 H 0.185 0.815 40 H 0.185 0.815 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.127 -3.484 -21.737 22.117 hybrid contribution -0.478 -0.211 1.589 1.673 sum 1.648 -3.696 -20.148 20.551 Atomic orbital electron populations 1.21883 0.98580 0.99370 0.99348 1.18287 0.90925 0.91900 0.82237 0.98598 1.21612 1.32338 1.13505 0.90732 0.90512 1.25822 0.94952 0.95590 1.02451 1.70072 1.37208 1.24062 1.24456 0.85298 0.78036 0.78561 0.78436 1.18048 1.21226 1.20638 1.46229 1.65351 1.14355 1.09598 1.21294 0.77842 0.87278 0.85747 1.90688 1.52664 1.18562 1.85772 1.21888 1.07929 0.98226 0.87810 1.22111 0.81250 0.97781 0.93347 0.89930 1.31013 1.15441 1.16712 1.11481 1.05119 0.73472 0.76386 0.76343 1.93593 1.57698 1.60006 1.84767 1.93568 1.86327 1.78517 1.36477 1.30251 1.25188 1.22129 1.04700 1.20915 0.97025 0.90556 0.94844 1.21589 0.94326 1.02069 1.00412 1.21605 0.99537 0.93151 0.90908 1.21203 0.97825 0.99130 1.02230 1.18550 0.94079 0.87195 0.84498 1.85397 1.30931 1.57893 1.48548 0.97070 0.94058 0.91846 0.92676 0.75643 0.84146 0.81828 0.77903 0.79632 0.83396 0.81467 0.81535 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.63 9.26 71.98 0.67 -5.96 16 2 C 0.27 13.57 2.56 44.24 0.11 13.68 16 3 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 4 C -0.54 -27.82 8.73 25.60 0.22 -27.60 16 5 H 0.08 3.61 7.74 -2.91 -0.02 3.58 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -52.35 11.32 21.45 0.24 -52.11 16 8 Si 0.97 41.10 29.54 68.60 2.03 43.13 16 9 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 10 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 12 N -0.71 -26.60 5.07 -446.10 -2.26 -28.87 16 13 C 0.49 17.38 7.68 87.66 0.67 18.06 16 14 O -0.60 -27.60 15.10 10.45 0.16 -27.44 16 15 C -0.12 -2.32 5.42 29.85 0.16 -2.16 16 16 C 0.11 2.46 2.21 30.87 0.07 2.53 16 17 H 0.08 2.14 7.94 -2.39 -0.02 2.12 16 18 C -0.61 -7.54 6.14 72.26 0.44 -7.10 16 19 S 2.50 52.21 5.40 -56.49 -0.30 51.90 16 20 O -0.96 -26.89 17.96 -127.69 -2.29 -29.18 16 21 O -0.95 -23.11 17.84 -127.69 -2.28 -25.38 16 22 C -0.74 -17.99 5.71 22.32 0.13 -17.86 16 23 C -0.01 -0.31 9.56 22.26 0.21 -0.10 16 24 C -0.17 -2.93 10.07 22.27 0.22 -2.71 16 25 C -0.03 -0.65 10.02 22.18 0.22 -0.43 16 26 C -0.18 -4.71 9.90 22.49 0.22 -4.48 16 27 C 0.20 5.54 6.52 22.64 0.15 5.68 16 28 O -0.31 -8.69 8.72 -70.78 -0.62 -9.31 16 29 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 3.50 6.07 -2.39 -0.01 3.48 16 32 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.41 12.12 8.54 -92.71 -0.79 11.33 16 34 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.16 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.20 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.19 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.17 1.73 8.06 -2.92 -0.02 1.71 16 40 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -84.15 358.59 -1.10 -85.24 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.27 Total: 19.41 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 3.96 Total: -27.39 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -2.02 Total: -80.98 kcal Atomic # 8 Polarization: -86.29 SS G_CDS: -5.03 Total: -91.32 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 16 Polarization: 52.21 SS G_CDS: -0.30 Total: 51.90 kcal Total: -84.15 -1.10 -85.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411783506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.618 kcal (2) G-P(sol) polarization free energy of solvation -84.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds