Wall clock time and date at job start Tue Mar 31 2020 22:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99826 * 2 1 4 4 O 1.20827 * 119.99664 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00456 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47215 * 54.99231 * 5 3 2 7 7 O 1.42899 * 109.47709 * 174.99763 * 5 3 2 8 8 C 1.53002 * 109.47181 * 295.00200 * 5 3 2 9 9 C 1.52993 * 109.47327 * 174.99856 * 8 5 3 10 10 N 1.46508 * 109.47030 * 179.97438 * 9 8 5 11 11 C 1.34782 * 119.99649 * 179.97438 * 10 9 8 12 12 O 1.21547 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.47867 * 119.99333 * 180.02562 * 11 10 9 14 14 C 1.39670 * 120.10359 * 359.72478 * 13 11 10 15 15 C 1.38039 * 120.03464 * 179.74322 * 14 13 11 16 16 C 1.38173 * 120.24719 * 0.55705 * 15 14 13 17 17 C 1.39180 * 120.20340 * 359.69917 * 16 15 14 18 18 S 1.76201 * 120.02520 * 179.97438 * 17 16 15 19 19 C 1.76200 * 100.00000 * 265.52875 * 18 17 16 20 20 H 1.07999 * 120.00162 * 5.11300 * 19 18 17 21 21 C 1.38724 * 119.99850 * 185.12080 * 19 18 17 22 22 N 1.31626 * 119.99964 * 180.02562 * 21 19 18 23 23 Si 1.86809 * 120.00058 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46821 * 90.00317 * 23 21 19 25 25 H 1.48502 * 109.46857 * 210.00389 * 23 21 19 26 26 H 1.48501 * 109.46913 * 330.00241 * 23 21 19 27 27 C 1.38878 * 119.95280 * 0.02562 * 17 16 15 28 28 H 1.08999 * 109.47317 * 60.00612 * 1 2 3 29 29 H 1.08999 * 109.46682 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47089 * 299.99742 * 1 2 3 31 31 H 0.96704 * 113.99895 * 60.00037 * 7 5 3 32 32 H 1.09002 * 109.46548 * 294.99828 * 8 5 3 33 33 H 1.09000 * 109.47274 * 54.98964 * 8 5 3 34 34 H 1.09002 * 109.47283 * 299.99521 * 9 8 5 35 35 H 1.08998 * 109.47673 * 59.99904 * 9 8 5 36 36 H 0.96995 * 120.00260 * 0.02562 * 10 9 8 37 37 H 1.07999 * 119.98226 * 0.02562 * 14 13 11 38 38 H 1.08004 * 119.87246 * 180.25505 * 15 14 13 39 39 H 1.08007 * 119.90230 * 179.71904 * 16 15 14 40 40 H 0.97006 * 119.99975 * 179.97438 * 22 21 19 41 41 H 1.08004 * 120.11747 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2751 0.0006 6 1 3.9603 0.7052 -0.8409 7 8 3.9717 2.6403 -0.1170 8 6 4.1070 0.6932 1.3083 9 6 5.6357 0.6586 1.2574 10 7 6.1535 0.1020 2.5099 11 6 7.4828 -0.0257 2.6918 12 8 8.2521 0.3213 1.8170 13 6 8.0053 -0.5880 3.9556 14 6 7.1234 -0.9820 4.9645 15 6 7.6125 -1.5116 6.1417 16 6 8.9746 -1.6439 6.3324 17 6 9.8627 -1.2495 5.3360 18 16 11.5988 -1.4196 5.5845 19 6 11.9812 0.1919 6.1857 20 1 11.1883 0.9015 6.3706 21 6 13.3007 0.5493 6.4213 22 7 13.5863 1.7530 6.8708 23 14 14.6722 -0.6782 6.1019 24 1 15.1448 -0.5389 4.7011 25 1 15.7987 -0.4151 7.0330 26 1 14.1631 -2.0564 6.3179 27 6 9.3796 -0.7209 4.1461 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.6559 3.2075 0.5997 32 1 3.7852 1.3156 2.1433 33 1 3.7248 -0.3189 1.4412 34 1 5.9575 0.0362 0.4224 35 1 6.0179 1.6707 1.1246 36 1 5.5396 -0.1752 3.2078 37 1 6.0581 -0.8765 4.8217 38 1 6.9280 -1.8193 6.9184 39 1 9.3514 -2.0548 7.2575 40 1 14.5090 2.0028 7.0359 41 1 10.0664 -0.4144 3.3709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412805726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:50 Heat of formation + Delta-G solvation = -151.809791 kcal Electronic energy + Delta-G solvation = -25296.553001 eV Core-core repulsion = 21267.687274 eV Total energy + Delta-G solvation = -4028.865727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.22622 -40.04040 -38.31701 -37.83149 -36.78430 -35.21953 -32.50468 -32.36341 -30.86728 -30.60853 -28.76080 -26.73213 -25.68659 -23.90296 -22.78159 -22.09877 -21.72580 -20.49619 -18.80243 -18.43532 -17.89097 -17.34856 -16.98605 -16.57977 -16.23063 -15.79671 -15.64549 -15.23837 -15.06875 -14.91347 -14.48217 -14.20119 -13.92001 -13.66742 -13.56081 -13.44839 -12.92910 -12.75290 -12.71691 -12.46256 -12.27217 -11.95496 -11.80592 -11.52037 -11.39018 -11.36670 -11.21907 -11.10317 -10.66993 -10.65032 -9.96471 -9.84632 -9.28306 -9.20158 -9.08785 -8.67638 -8.18221 -7.14511 -6.33406 -4.09204 1.07123 1.50490 1.56237 2.02072 2.83188 2.97868 3.03574 3.27141 3.38162 3.49162 3.58498 4.04100 4.07592 4.14434 4.25681 4.27732 4.53807 4.56973 4.64258 4.80041 4.86683 4.88679 4.98918 5.00424 5.05368 5.06765 5.14899 5.49124 5.58873 5.67532 5.73116 5.76156 5.88847 6.15022 6.23697 6.48026 6.53792 6.80389 6.80711 7.07725 7.12063 7.38606 7.90627 8.21265 8.43945 9.10362 10.75923 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.001906 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.988718 B =14687.369367 C =15288.807443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.432 3.568 4 O -0.498 6.498 5 C 0.127 3.873 6 H 0.144 0.856 7 O -0.526 6.526 8 C -0.161 4.161 9 C 0.125 3.875 10 N -0.734 5.734 11 C 0.564 3.436 12 O -0.530 6.530 13 C -0.153 4.153 14 C -0.086 4.086 15 C -0.140 4.140 16 C -0.051 4.051 17 C -0.085 4.085 18 S -0.112 6.112 19 C -0.510 4.510 20 H 0.091 0.909 21 C 0.095 3.905 22 N -0.875 5.875 23 Si 0.858 3.142 24 H -0.265 1.265 25 H -0.273 1.273 26 H -0.239 1.239 27 C -0.016 4.016 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.388 0.612 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.399 0.601 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.272 0.728 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.130 -6.247 -9.733 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.274 3.726 4 O -0.385 6.385 5 C 0.065 3.935 6 H 0.161 0.839 7 O -0.332 6.332 8 C -0.199 4.199 9 C 0.001 3.999 10 N -0.388 5.388 11 C 0.353 3.647 12 O -0.407 6.407 13 C -0.158 4.158 14 C -0.105 4.105 15 C -0.159 4.159 16 C -0.072 4.072 17 C -0.196 4.196 18 S 0.122 5.878 19 C -0.657 4.657 20 H 0.109 0.891 21 C -0.114 4.114 22 N -0.511 5.511 23 Si 0.683 3.317 24 H -0.190 1.190 25 H -0.198 1.198 26 H -0.163 1.163 27 C -0.038 4.038 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.238 0.762 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.234 0.766 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.082 0.918 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.618 -6.662 -11.023 27.783 hybrid contribution -1.093 0.939 0.999 1.754 sum -25.710 -5.723 -10.023 28.182 Atomic orbital electron populations 1.23332 0.75879 1.04063 1.02724 1.86521 1.23843 1.33116 1.83708 1.24907 0.93245 0.81864 0.72583 1.90710 1.66827 1.36415 1.44564 1.21431 0.85100 0.85898 1.01063 0.83862 1.86717 1.75529 1.17548 1.53445 1.22456 0.96757 1.03759 0.96919 1.21208 0.91093 1.00604 0.86973 1.45837 1.07223 1.66456 1.19274 1.18358 0.81665 0.77687 0.87010 1.90793 1.56770 1.49028 1.44064 1.19821 0.94683 1.06554 0.94735 1.21160 0.98261 0.97647 0.93439 1.21046 0.95557 1.01838 0.97508 1.21906 0.92470 0.94801 0.98023 1.22212 1.00732 1.01368 0.95286 1.83076 0.97079 1.22287 1.85346 1.22243 0.97005 0.96330 1.50096 0.89071 1.24749 0.97984 0.95103 0.93575 1.69928 1.20093 1.18207 1.42889 0.86731 0.82430 0.83117 0.79466 1.19001 1.19790 1.16348 1.21911 0.93556 0.91746 0.96565 0.91723 0.87736 0.91730 0.76236 0.89967 0.88607 0.90808 0.90213 0.76583 0.86364 0.85622 0.84891 0.91797 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.56 101.05 1.07 1.21 16 2 O -0.36 -2.30 10.53 -39.26 -0.41 -2.71 16 3 C 0.43 3.23 7.27 36.00 0.26 3.49 16 4 O -0.50 -5.19 16.07 -25.46 -0.41 -5.60 16 5 C 0.13 0.75 3.49 -27.88 -0.10 0.65 16 6 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 7 O -0.53 -3.97 12.53 -55.13 -0.69 -4.66 16 8 C -0.16 -0.80 4.99 -26.73 -0.13 -0.93 16 9 C 0.12 1.04 5.57 -4.04 -0.02 1.02 16 10 N -0.73 -7.36 5.51 -61.24 -0.34 -7.70 16 11 C 0.56 8.57 7.77 -12.32 -0.10 8.48 16 12 O -0.53 -10.16 16.34 5.32 0.09 -10.07 16 13 C -0.15 -2.44 5.87 -105.00 -0.62 -3.05 16 14 C -0.09 -1.08 9.54 -39.12 -0.37 -1.46 16 15 C -0.14 -1.86 10.02 -39.68 -0.40 -2.26 16 16 C -0.05 -0.87 9.79 -39.26 -0.38 -1.25 16 17 C -0.09 -1.75 5.45 -38.99 -0.21 -1.96 16 18 S -0.11 -2.69 19.38 -107.50 -2.08 -4.77 16 19 C -0.51 -14.57 10.01 30.91 0.31 -14.26 16 20 H 0.09 2.83 8.02 -52.49 -0.42 2.41 16 21 C 0.09 2.73 5.50 -17.46 -0.10 2.63 16 22 N -0.88 -26.21 13.97 55.49 0.78 -25.43 16 23 Si 0.86 20.95 27.74 -169.99 -4.71 16.24 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.24 -5.65 6.74 56.52 0.38 -5.26 16 27 C -0.02 -0.32 9.34 -38.92 -0.36 -0.68 16 28 H 0.06 0.30 8.13 -51.93 -0.42 -0.13 16 29 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.28 8.13 -51.93 -0.42 -0.14 16 31 H 0.39 2.00 8.79 45.56 0.40 2.40 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.80 7.82 -51.93 -0.41 0.39 16 36 H 0.40 2.81 6.50 -40.82 -0.27 2.55 16 37 H 0.12 0.97 6.40 -52.49 -0.34 0.64 16 38 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.13 2.13 8.06 -52.48 -0.42 1.70 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.14 2.98 7.65 -52.48 -0.40 2.58 16 LS Contribution 374.75 15.07 5.65 5.65 Total: -1.00 -36.55 374.75 -7.68 -44.23 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.39 Total: 3.20 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -1.15 Total: -8.36 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.44 Total: -33.13 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.43 Total: -23.05 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.71 Total: 16.24 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -2.08 Total: -4.77 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.55 -7.68 -44.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412805726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.580 kcal (2) G-P(sol) polarization free energy of solvation -36.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds