Wall clock time and date at job start Tue Mar 31 2020 22:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99826 * 2 1 4 4 O 1.20827 * 119.99664 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00456 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47215 * 54.99231 * 5 3 2 7 7 O 1.42899 * 109.47709 * 174.99763 * 5 3 2 8 8 C 1.53002 * 109.47181 * 295.00200 * 5 3 2 9 9 C 1.52993 * 109.47327 * 174.99856 * 8 5 3 10 10 N 1.46508 * 109.47030 * 179.97438 * 9 8 5 11 11 C 1.34782 * 119.99649 * 179.97438 * 10 9 8 12 12 O 1.21547 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.47867 * 119.99333 * 180.02562 * 11 10 9 14 14 C 1.39670 * 120.10359 * 359.72478 * 13 11 10 15 15 C 1.38039 * 120.03464 * 179.74322 * 14 13 11 16 16 C 1.38173 * 120.24719 * 0.55705 * 15 14 13 17 17 C 1.39180 * 120.20340 * 359.69917 * 16 15 14 18 18 S 1.76201 * 120.02520 * 179.97438 * 17 16 15 19 19 C 1.76200 * 100.00000 * 265.52875 * 18 17 16 20 20 H 1.07999 * 120.00162 * 5.11300 * 19 18 17 21 21 C 1.38724 * 119.99850 * 185.12080 * 19 18 17 22 22 N 1.31626 * 119.99964 * 180.02562 * 21 19 18 23 23 Si 1.86809 * 120.00058 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46821 * 90.00317 * 23 21 19 25 25 H 1.48502 * 109.46857 * 210.00389 * 23 21 19 26 26 H 1.48501 * 109.46913 * 330.00241 * 23 21 19 27 27 C 1.38878 * 119.95280 * 0.02562 * 17 16 15 28 28 H 1.08999 * 109.47317 * 60.00612 * 1 2 3 29 29 H 1.08999 * 109.46682 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47089 * 299.99742 * 1 2 3 31 31 H 0.96704 * 113.99895 * 60.00037 * 7 5 3 32 32 H 1.09002 * 109.46548 * 294.99828 * 8 5 3 33 33 H 1.09000 * 109.47274 * 54.98964 * 8 5 3 34 34 H 1.09002 * 109.47283 * 299.99521 * 9 8 5 35 35 H 1.08998 * 109.47673 * 59.99904 * 9 8 5 36 36 H 0.96995 * 120.00260 * 0.02562 * 10 9 8 37 37 H 1.07999 * 119.98226 * 0.02562 * 14 13 11 38 38 H 1.08004 * 119.87246 * 180.25505 * 15 14 13 39 39 H 1.08007 * 119.90230 * 179.71904 * 16 15 14 40 40 H 0.97006 * 119.99975 * 179.97438 * 22 21 19 41 41 H 1.08004 * 120.11747 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2751 0.0006 6 1 3.9603 0.7052 -0.8409 7 8 3.9717 2.6403 -0.1170 8 6 4.1070 0.6932 1.3083 9 6 5.6357 0.6586 1.2574 10 7 6.1535 0.1020 2.5099 11 6 7.4828 -0.0257 2.6918 12 8 8.2521 0.3213 1.8170 13 6 8.0053 -0.5880 3.9556 14 6 7.1234 -0.9820 4.9645 15 6 7.6125 -1.5116 6.1417 16 6 8.9746 -1.6439 6.3324 17 6 9.8627 -1.2495 5.3360 18 16 11.5988 -1.4196 5.5845 19 6 11.9812 0.1919 6.1857 20 1 11.1883 0.9015 6.3706 21 6 13.3007 0.5493 6.4213 22 7 13.5863 1.7530 6.8708 23 14 14.6722 -0.6782 6.1019 24 1 15.1448 -0.5389 4.7011 25 1 15.7987 -0.4151 7.0330 26 1 14.1631 -2.0564 6.3179 27 6 9.3796 -0.7209 4.1461 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.6559 3.2075 0.5997 32 1 3.7852 1.3156 2.1433 33 1 3.7248 -0.3189 1.4412 34 1 5.9575 0.0362 0.4224 35 1 6.0179 1.6707 1.1246 36 1 5.5396 -0.1752 3.2078 37 1 6.0581 -0.8765 4.8217 38 1 6.9280 -1.8193 6.9184 39 1 9.3514 -2.0548 7.2575 40 1 14.5090 2.0028 7.0359 41 1 10.0664 -0.4144 3.3709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412805726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:50 Heat of formation + Delta-G solvation = -179.590648 kcal Electronic energy + Delta-G solvation = -25297.757669 eV Core-core repulsion = 21267.687274 eV Total energy + Delta-G solvation = -4030.070395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.78509 -41.20407 -39.28043 -38.63104 -37.40661 -36.13116 -34.71653 -33.21566 -32.02475 -31.77599 -29.29239 -27.91959 -27.32338 -24.94112 -23.84922 -23.06955 -22.27602 -21.63272 -20.08436 -19.33832 -18.95958 -18.41307 -17.61383 -17.42068 -17.14582 -16.93083 -16.83921 -16.57597 -16.35126 -15.94098 -15.62030 -15.10078 -14.95290 -14.70156 -14.63661 -14.53933 -14.25610 -13.88415 -13.60894 -13.29034 -13.18026 -13.11696 -13.06735 -12.77741 -12.66822 -12.38395 -12.27011 -12.01162 -11.85577 -11.85123 -11.35366 -11.22202 -11.10047 -10.89389 -10.27628 -9.90344 -9.73486 -9.14068 -8.53770 -6.27899 -0.19579 0.22141 0.94925 1.07011 1.31642 1.44033 1.54844 1.66581 1.78840 2.08988 2.21782 2.60796 2.84310 2.97793 3.11740 3.54989 3.61544 3.79646 3.87255 3.92869 4.00521 4.09717 4.28438 4.31257 4.33183 4.36843 4.46825 4.59351 4.66198 4.72071 4.90746 4.93496 5.02424 5.20935 5.24485 5.30546 5.34348 5.45637 5.68756 5.84543 6.10115 6.37647 6.46705 6.62517 6.88639 7.14787 8.59685 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.001906 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.988718 B =14687.369367 C =15288.807443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.438 3.562 4 O -0.533 6.533 5 C 0.128 3.872 6 H 0.156 0.844 7 O -0.546 6.546 8 C -0.144 4.144 9 C 0.123 3.877 10 N -0.706 5.706 11 C 0.561 3.439 12 O -0.582 6.582 13 C -0.158 4.158 14 C -0.057 4.057 15 C -0.122 4.122 16 C -0.059 4.059 17 C -0.121 4.121 18 S -0.116 6.116 19 C -0.525 4.525 20 H 0.046 0.954 21 C 0.040 3.960 22 N -0.919 5.919 23 Si 0.923 3.077 24 H -0.263 1.263 25 H -0.257 1.257 26 H -0.226 1.226 27 C -0.044 4.044 28 H 0.059 0.941 29 H 0.132 0.868 30 H 0.064 0.936 31 H 0.396 0.604 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.418 0.582 37 H 0.179 0.821 38 H 0.178 0.822 39 H 0.139 0.861 40 H 0.278 0.722 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.427 -8.518 -9.185 31.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.281 3.719 4 O -0.422 6.422 5 C 0.067 3.933 6 H 0.173 0.827 7 O -0.354 6.354 8 C -0.182 4.182 9 C -0.001 4.001 10 N -0.360 5.360 11 C 0.349 3.651 12 O -0.463 6.463 13 C -0.163 4.163 14 C -0.076 4.076 15 C -0.141 4.141 16 C -0.080 4.080 17 C -0.232 4.232 18 S 0.117 5.883 19 C -0.671 4.671 20 H 0.064 0.936 21 C -0.166 4.166 22 N -0.556 5.556 23 Si 0.743 3.257 24 H -0.188 1.188 25 H -0.181 1.181 26 H -0.150 1.150 27 C -0.066 4.066 28 H 0.077 0.923 29 H 0.150 0.850 30 H 0.083 0.917 31 H 0.247 0.753 32 H 0.115 0.885 33 H 0.136 0.864 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.257 0.743 37 H 0.196 0.804 38 H 0.195 0.805 39 H 0.157 0.843 40 H 0.087 0.913 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -27.984 -8.956 -10.452 31.186 hybrid contribution -0.377 1.669 0.788 1.884 sum -28.361 -7.287 -9.664 30.836 Atomic orbital electron populations 1.23575 0.74760 1.05859 1.02497 1.86518 1.24973 1.32391 1.83220 1.25127 0.93619 0.81623 0.71490 1.90701 1.67634 1.37561 1.46346 1.21545 0.84230 0.85383 1.02135 0.82700 1.86693 1.75802 1.18600 1.54285 1.22330 0.93663 1.05331 0.96848 1.21290 0.93407 0.99374 0.85981 1.45607 1.05512 1.64547 1.20287 1.18358 0.83029 0.77468 0.86215 1.90776 1.58463 1.51451 1.45563 1.19961 0.93521 1.06565 0.96274 1.21782 1.00559 0.93862 0.91372 1.21580 0.94250 0.99583 0.98709 1.22092 0.94042 0.94641 0.97231 1.22082 0.98456 1.05343 0.97312 1.82615 1.01673 1.18813 1.85158 1.22387 0.96230 0.98294 1.50236 0.93570 1.25746 1.00559 0.97106 0.93140 1.70036 1.21079 1.20327 1.44204 0.85762 0.79242 0.81117 0.79564 1.18757 1.18141 1.14952 1.21656 0.95329 0.93738 0.95884 0.92265 0.84956 0.91741 0.75307 0.88526 0.86354 0.91116 0.92018 0.74288 0.80408 0.80458 0.84315 0.91283 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 113.37 1.20 1.37 16 2 O -0.36 -3.66 10.53 -51.43 -0.54 -4.20 16 3 C 0.44 5.69 7.27 71.23 0.52 6.21 16 4 O -0.53 -10.54 16.07 28.38 0.46 -10.08 16 5 C 0.13 1.24 3.49 29.85 0.10 1.34 16 6 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 7 O -0.55 -7.66 12.53 -129.95 -1.63 -9.29 16 8 C -0.14 -0.92 4.99 30.59 0.15 -0.77 16 9 C 0.12 1.78 5.57 86.38 0.48 2.26 16 10 N -0.71 -11.93 5.51 -465.94 -2.57 -14.50 16 11 C 0.56 16.50 7.77 86.79 0.67 17.17 16 12 O -0.58 -23.06 16.34 -3.86 -0.06 -23.13 16 13 C -0.16 -4.83 5.87 -20.11 -0.12 -4.95 16 14 C -0.06 -1.16 9.54 22.57 0.22 -0.95 16 15 C -0.12 -2.66 10.02 22.21 0.22 -2.44 16 16 C -0.06 -1.92 9.79 22.48 0.22 -1.70 16 17 C -0.12 -5.08 5.45 22.65 0.12 -4.95 16 18 S -0.12 -5.80 19.38 -56.49 -1.09 -6.90 16 19 C -0.52 -31.62 10.01 67.94 0.68 -30.94 16 20 H 0.05 3.08 8.02 -2.91 -0.02 3.06 16 21 C 0.04 2.36 5.50 84.84 0.47 2.82 16 22 N -0.92 -57.27 13.97 21.63 0.30 -56.97 16 23 Si 0.92 44.24 27.74 68.60 1.90 46.14 16 24 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.23 -10.27 6.74 99.48 0.67 -9.60 16 27 C -0.04 -1.80 9.34 22.70 0.21 -1.59 16 28 H 0.06 0.46 8.13 -2.39 -0.02 0.44 16 29 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.06 0.44 8.13 -2.39 -0.02 0.42 16 31 H 0.40 3.73 8.79 -74.05 -0.65 3.08 16 32 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.12 0.32 8.12 -2.39 -0.02 0.30 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.18 7.82 -2.39 -0.02 1.16 16 36 H 0.42 3.59 6.50 -92.71 -0.60 2.99 16 37 H 0.18 1.50 6.40 -2.91 -0.02 1.48 16 38 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.28 15.90 8.31 -92.70 -0.77 15.12 16 41 H 0.11 4.91 7.65 -2.91 -0.02 4.89 16 Total: -1.00 -87.91 374.75 1.71 -86.20 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -0.21 Total: 9.83 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 5.15 Total: -17.11 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -2.26 Total: -71.46 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -1.78 Total: -46.71 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.90 Total: 46.14 kcal Atomic # 16 Polarization: -5.80 SS G_CDS: -1.09 Total: -6.90 kcal Total: -87.91 1.71 -86.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412805726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.387 kcal (2) G-P(sol) polarization free energy of solvation -87.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds