Wall clock time and date at job start Tue Mar 31 2020 22:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 H 1.07996 * 120.00425 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99720 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00210 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 119.99953 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47037 * 89.99915 * 8 6 4 10 10 H 1.48499 * 109.46918 * 209.99699 * 8 6 4 11 11 H 1.48497 * 109.46912 * 330.00156 * 8 6 4 12 12 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00089 * 179.97438 * 12 2 1 14 14 C 1.50702 * 120.00335 * 0.02562 * 12 2 1 15 15 C 1.53003 * 109.47196 * 179.97438 * 14 12 2 16 16 H 1.09000 * 109.53620 * 304.99604 * 15 14 12 17 17 C 1.53821 * 109.53476 * 184.83993 * 15 14 12 18 18 S 1.82111 * 106.85268 * 174.36935 * 17 15 14 19 19 O 1.42106 * 110.76313 * 154.06549 * 18 17 15 20 20 O 1.42103 * 110.76334 * 291.57643 * 18 17 15 21 21 C 1.76696 * 102.90705 * 42.82291 * 18 17 15 22 22 C 1.38243 * 119.07992 * 166.83498 * 21 18 17 23 23 C 1.38164 * 120.28603 * 179.56873 * 22 21 18 24 24 C 1.38285 * 119.67880 * 359.86342 * 23 22 21 25 25 C 1.37787 * 120.17182 * 0.31358 * 24 23 22 26 26 C 1.38427 * 120.42179 * 346.78069 * 21 18 17 27 27 O 1.35150 * 123.59635 * 1.82092 * 26 21 18 28 28 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 29 29 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 30 30 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 31 31 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 32 32 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 33 33 H 0.96994 * 120.00233 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47188 * 299.99755 * 14 12 2 35 35 H 1.08996 * 109.47042 * 59.99980 * 14 12 2 36 36 H 1.09003 * 109.97251 * 293.69970 * 17 15 14 37 37 H 1.09001 * 109.97785 * 55.03154 * 17 15 14 38 38 H 1.08003 * 119.85624 * 359.54265 * 22 21 18 39 39 H 1.08000 * 120.16022 * 179.87045 * 23 22 21 40 40 H 1.08002 * 119.91402 * 180.29193 * 24 23 22 41 41 H 1.08003 * 119.74703 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0982 1.0957 2.2417 6 6 3.1270 2.8773 1.6728 7 7 3.3467 3.2567 2.9127 8 14 3.7340 3.9287 0.2529 9 1 2.6825 4.9077 -0.1229 10 1 4.9622 4.6549 0.6645 11 1 4.0396 3.0591 -0.9114 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 6 2.3795 -3.6353 -0.0027 16 1 3.0642 -3.5287 -0.8441 17 6 1.6158 -4.9648 -0.1262 18 16 2.8661 -6.2786 -0.2908 19 8 2.3558 -7.5207 0.1739 20 8 3.5410 -6.1784 -1.5374 21 6 4.0799 -5.8209 0.9089 22 6 5.0532 -6.7365 1.2631 23 6 6.0197 -6.4018 2.1920 24 6 6.0116 -5.1435 2.7655 25 6 5.0406 -4.2300 2.4173 26 6 4.0564 -4.5623 1.4848 27 8 3.1151 -3.6320 1.2110 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 3.1500 1.1383 -0.5139 32 1 1.6085 2.0284 -0.5138 33 1 3.8235 4.0826 3.0900 34 1 0.7583 -2.5307 0.8880 35 1 0.7590 -2.5294 -0.8919 36 1 1.0143 -5.1330 0.7671 37 1 0.9765 -4.9464 -1.0089 38 1 5.0578 -7.7178 0.8120 39 1 6.7779 -7.1194 2.4687 40 1 6.7681 -4.8763 3.4885 41 1 5.0411 -3.2490 2.8691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433628756.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:34 Heat of formation + Delta-G solvation = -94.501451 kcal Electronic energy + Delta-G solvation = -27606.250308 eV Core-core repulsion = 23579.869657 eV Total energy + Delta-G solvation = -4026.380651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.69089 -39.21987 -37.96896 -37.29767 -36.23693 -35.02757 -33.68101 -32.54371 -31.45213 -30.17331 -29.54555 -27.86811 -25.94537 -24.25081 -23.27238 -22.48081 -21.49171 -19.36579 -19.00034 -18.50252 -17.57638 -17.01497 -16.99432 -16.62318 -16.09552 -15.77324 -15.51355 -15.31105 -15.03908 -14.88492 -14.46048 -14.10273 -13.87324 -13.39846 -13.19144 -12.85369 -12.69164 -12.62869 -12.40136 -12.39809 -12.34679 -12.28336 -12.10230 -11.89020 -11.77135 -11.60541 -11.27525 -10.97448 -10.88827 -10.66857 -10.54241 -10.15406 -9.59214 -9.57047 -9.14284 -8.62609 -8.54648 -7.79171 -6.11987 -4.10920 -0.29038 0.67878 1.15364 2.41958 2.61930 3.21462 3.23628 3.24321 3.30219 3.33198 3.36337 3.54705 3.81923 4.13274 4.32983 4.36485 4.49300 4.54293 4.77449 4.79510 4.96207 4.99882 5.07217 5.17192 5.22079 5.25726 5.30912 5.49310 5.56687 5.65499 5.79801 5.84258 5.95419 6.05897 6.23229 6.47695 6.58423 6.90703 7.23372 7.25845 7.56850 8.12367 8.42558 8.83507 8.92188 9.47971 11.01418 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.003364 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.006975 B = 8321.860945 C = 9456.782820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.598 5.598 3 C 0.216 3.784 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.264 1.264 12 C 0.506 3.494 13 O -0.528 6.528 14 C -0.130 4.130 15 C 0.126 3.874 16 H 0.103 0.897 17 C -0.645 4.645 18 S 2.496 3.504 19 O -0.930 6.930 20 O -0.926 6.926 21 C -0.722 4.722 22 C 0.005 3.995 23 C -0.169 4.169 24 C -0.037 4.037 25 C -0.156 4.156 26 C 0.227 3.773 27 O -0.292 6.292 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 -18.848 -5.089 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.330 5.330 3 C 0.095 3.905 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.188 1.188 12 C 0.292 3.708 13 O -0.405 6.405 14 C -0.171 4.171 15 C 0.068 3.932 16 H 0.120 0.880 17 C -0.774 4.774 18 S 2.676 3.324 19 O -0.928 6.928 20 O -0.923 6.923 21 C -0.810 4.810 22 C -0.014 4.014 23 C -0.188 4.188 24 C -0.055 4.055 25 C -0.175 4.175 26 C 0.179 3.821 27 O -0.204 6.204 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.173 0.827 37 H 0.176 0.824 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.405 -19.245 -5.431 20.285 hybrid contribution 0.193 1.259 -0.009 1.274 sum -3.212 -17.986 -5.440 19.063 Atomic orbital electron populations 1.21688 0.80912 1.01766 1.01717 1.47816 1.06269 1.07118 1.71811 1.19698 0.92538 0.79762 0.98464 1.21313 1.37005 1.07187 0.91240 0.90764 1.24857 0.95209 0.97362 0.95556 1.69891 1.41467 1.23516 1.18671 0.86871 0.78941 0.80804 0.83268 1.20109 1.20908 1.18841 1.20008 0.88125 0.84763 0.77891 1.90714 1.13558 1.86911 1.49291 1.21806 0.97811 0.91602 1.05843 1.21962 0.92382 0.91890 0.86921 0.87962 1.31153 1.17370 1.14849 1.14042 1.05472 0.76121 0.75993 0.74815 1.93601 1.80046 1.37659 1.81452 1.93634 1.71729 1.86521 1.40434 1.30013 1.22012 1.02647 1.26349 1.20444 0.90669 0.96812 0.93520 1.21142 1.00516 0.97630 0.99543 1.21222 0.95884 0.92404 0.95995 1.21033 0.93835 1.01778 1.00813 1.18363 0.86666 0.85017 0.92082 1.85468 1.47716 1.49050 1.38205 0.92672 0.91235 0.92377 0.94044 0.95636 0.92544 0.87305 0.86556 0.82742 0.82370 0.84919 0.84852 0.84508 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.29 59.85 0.62 1.74 16 2 N -0.60 -11.47 2.86 -182.95 -0.52 -11.99 16 3 C 0.22 5.10 4.27 -5.19 -0.02 5.08 16 4 C -0.53 -14.92 9.94 -34.44 -0.34 -15.26 16 5 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 8 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 12 C 0.51 9.44 7.55 -10.99 -0.08 9.36 16 13 O -0.53 -12.24 15.01 -8.82 -0.13 -12.37 16 14 C -0.13 -1.55 3.97 -27.88 -0.11 -1.66 16 15 C 0.13 1.54 2.22 -26.30 -0.06 1.49 16 16 H 0.10 1.32 7.94 -51.93 -0.41 0.91 16 17 C -0.64 -5.21 6.14 37.58 0.23 -4.98 16 18 S 2.50 27.76 5.40 -107.50 -0.58 27.18 16 19 O -0.93 -12.03 17.84 -57.50 -1.03 -13.05 16 20 O -0.93 -12.87 17.96 -57.50 -1.03 -13.90 16 21 C -0.72 -9.28 5.71 -39.51 -0.23 -9.51 16 22 C 0.00 0.05 9.56 -39.61 -0.38 -0.32 16 23 C -0.17 -1.75 10.06 -39.59 -0.40 -2.15 16 24 C -0.04 -0.41 10.02 -39.73 -0.40 -0.80 16 25 C -0.16 -2.14 9.90 -39.24 -0.39 -2.52 16 26 C 0.23 3.24 6.52 -39.01 -0.25 2.99 16 27 O -0.29 -4.40 8.70 -31.52 -0.27 -4.67 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.89 7.89 -51.93 -0.41 0.48 16 30 H 0.06 0.53 6.44 -51.93 -0.33 0.20 16 31 H 0.04 1.06 6.48 -51.93 -0.34 0.73 16 32 H 0.03 0.56 7.32 -51.93 -0.38 0.18 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.11 1.13 8.11 -51.93 -0.42 0.71 16 35 H 0.12 0.90 7.40 -51.93 -0.38 0.52 16 36 H 0.15 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.16 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.14 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 356.18 15.07 5.37 5.37 Total: -1.00 -39.55 356.18 -9.23 -48.79 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.23 Total: -0.73 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.91 Total: -14.56 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.25 Total: -38.57 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -2.47 Total: -44.00 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 27.76 SS G_CDS: -0.58 Total: 27.18 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -39.55 -9.23 -48.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433628756.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.713 kcal (2) G-P(sol) polarization free energy of solvation -39.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds