Wall clock time and date at job start Tue Mar 31 2020 22:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 H 1.07996 * 120.00425 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99720 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00210 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 119.99953 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47037 * 89.99915 * 8 6 4 10 10 H 1.48499 * 109.46918 * 209.99699 * 8 6 4 11 11 H 1.48497 * 109.46912 * 330.00156 * 8 6 4 12 12 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00089 * 179.97438 * 12 2 1 14 14 C 1.50702 * 120.00335 * 0.02562 * 12 2 1 15 15 C 1.53003 * 109.47196 * 179.97438 * 14 12 2 16 16 H 1.09000 * 109.53620 * 304.99604 * 15 14 12 17 17 C 1.53821 * 109.53476 * 184.83993 * 15 14 12 18 18 S 1.82111 * 106.85268 * 174.36935 * 17 15 14 19 19 O 1.42106 * 110.76313 * 154.06549 * 18 17 15 20 20 O 1.42103 * 110.76334 * 291.57643 * 18 17 15 21 21 C 1.76696 * 102.90705 * 42.82291 * 18 17 15 22 22 C 1.38243 * 119.07992 * 166.83498 * 21 18 17 23 23 C 1.38164 * 120.28603 * 179.56873 * 22 21 18 24 24 C 1.38285 * 119.67880 * 359.86342 * 23 22 21 25 25 C 1.37787 * 120.17182 * 0.31358 * 24 23 22 26 26 C 1.38427 * 120.42179 * 346.78069 * 21 18 17 27 27 O 1.35150 * 123.59635 * 1.82092 * 26 21 18 28 28 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 29 29 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 30 30 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 31 31 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 32 32 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 33 33 H 0.96994 * 120.00233 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47188 * 299.99755 * 14 12 2 35 35 H 1.08996 * 109.47042 * 59.99980 * 14 12 2 36 36 H 1.09003 * 109.97251 * 293.69970 * 17 15 14 37 37 H 1.09001 * 109.97785 * 55.03154 * 17 15 14 38 38 H 1.08003 * 119.85624 * 359.54265 * 22 21 18 39 39 H 1.08000 * 120.16022 * 179.87045 * 23 22 21 40 40 H 1.08002 * 119.91402 * 180.29193 * 24 23 22 41 41 H 1.08003 * 119.74703 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0982 1.0957 2.2417 6 6 3.1270 2.8773 1.6728 7 7 3.3467 3.2567 2.9127 8 14 3.7340 3.9287 0.2529 9 1 2.6825 4.9077 -0.1229 10 1 4.9622 4.6549 0.6645 11 1 4.0396 3.0591 -0.9114 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 6 2.3795 -3.6353 -0.0027 16 1 3.0642 -3.5287 -0.8441 17 6 1.6158 -4.9648 -0.1262 18 16 2.8661 -6.2786 -0.2908 19 8 2.3558 -7.5207 0.1739 20 8 3.5410 -6.1784 -1.5374 21 6 4.0799 -5.8209 0.9089 22 6 5.0532 -6.7365 1.2631 23 6 6.0197 -6.4018 2.1920 24 6 6.0116 -5.1435 2.7655 25 6 5.0406 -4.2300 2.4173 26 6 4.0564 -4.5623 1.4848 27 8 3.1151 -3.6320 1.2110 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 3.1500 1.1383 -0.5139 32 1 1.6085 2.0284 -0.5138 33 1 3.8235 4.0826 3.0900 34 1 0.7583 -2.5307 0.8880 35 1 0.7590 -2.5294 -0.8919 36 1 1.0143 -5.1330 0.7671 37 1 0.9765 -4.9464 -1.0089 38 1 5.0578 -7.7178 0.8120 39 1 6.7779 -7.1194 2.4687 40 1 6.7681 -4.8763 3.4885 41 1 5.0411 -3.2490 2.8691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433628756.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:33 Heat of formation + Delta-G solvation = -125.328557 kcal Electronic energy + Delta-G solvation = -27607.587072 eV Core-core repulsion = 23579.869657 eV Total energy + Delta-G solvation = -4027.717414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68793 -40.54561 -38.96407 -38.23648 -37.17864 -36.60127 -34.85102 -34.43909 -32.36508 -31.07841 -31.04487 -29.18327 -27.25757 -25.31848 -24.49293 -23.79364 -22.59783 -20.25793 -20.23237 -19.58523 -19.14826 -18.46371 -18.10010 -17.75074 -17.13296 -16.87480 -16.77232 -16.44216 -16.29345 -15.93044 -15.75532 -15.24767 -15.01788 -14.77529 -14.29873 -14.20124 -13.92347 -13.67262 -13.61138 -13.52726 -13.41149 -13.31970 -13.24297 -13.07788 -12.90571 -12.79535 -12.65643 -12.36689 -12.17353 -12.02869 -11.77790 -11.76243 -11.56501 -10.82142 -10.64618 -10.49711 -9.50365 -9.37096 -8.34271 -6.38966 -1.10714 -0.24232 0.20341 1.30914 1.35989 1.46285 1.55356 1.71369 1.84782 2.28447 2.30922 2.41163 2.46670 2.84931 3.00311 3.32294 3.51760 3.57541 3.66367 3.89927 3.96027 4.11563 4.17287 4.23782 4.30408 4.42232 4.51850 4.57780 4.71604 4.72455 4.74383 4.81702 4.86816 4.98132 5.04674 5.09741 5.31817 5.46894 5.62459 5.63604 6.23714 6.30227 6.62595 6.71981 7.22111 7.44719 8.82907 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.003364 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.006975 B = 8321.860945 C = 9456.782820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.609 5.609 3 C 0.222 3.778 4 C -0.535 4.535 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.948 3.052 9 H -0.250 1.250 10 H -0.284 1.284 11 H -0.256 1.256 12 C 0.491 3.509 13 O -0.588 6.588 14 C -0.118 4.118 15 C 0.110 3.890 16 H 0.087 0.913 17 C -0.614 4.614 18 S 2.508 3.492 19 O -0.950 6.950 20 O -0.960 6.960 21 C -0.736 4.736 22 C -0.012 4.012 23 C -0.165 4.165 24 C -0.035 4.035 25 C -0.189 4.189 26 C 0.206 3.794 27 O -0.319 6.319 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.018 0.982 32 H 0.050 0.950 33 H 0.268 0.732 34 H 0.132 0.868 35 H 0.174 0.826 36 H 0.183 0.817 37 H 0.209 0.791 38 H 0.152 0.848 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 -20.058 -7.100 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.340 5.340 3 C 0.100 3.900 4 C -0.574 4.574 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.770 3.230 9 H -0.174 1.174 10 H -0.210 1.210 11 H -0.180 1.180 12 C 0.280 3.720 13 O -0.469 6.469 14 C -0.157 4.157 15 C 0.053 3.947 16 H 0.105 0.895 17 C -0.746 4.746 18 S 2.690 3.310 19 O -0.948 6.948 20 O -0.957 6.957 21 C -0.822 4.822 22 C -0.031 4.031 23 C -0.183 4.183 24 C -0.052 4.052 25 C -0.209 4.209 26 C 0.158 3.842 27 O -0.233 6.233 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.132 0.868 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.150 0.850 35 H 0.191 0.809 36 H 0.201 0.799 37 H 0.226 0.774 38 H 0.170 0.830 39 H 0.187 0.813 40 H 0.182 0.818 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.440 -20.503 -7.444 22.481 hybrid contribution 0.807 1.605 0.721 1.936 sum -4.633 -18.898 -6.724 20.586 Atomic orbital electron populations 1.22050 0.77267 1.05069 1.02352 1.47952 1.08601 1.05818 1.71644 1.19334 0.92833 0.82778 0.95088 1.21587 1.36609 1.06606 0.92567 0.95489 1.25867 0.95336 0.99047 0.98558 1.70055 1.42884 1.24461 1.21325 0.85712 0.78778 0.79025 0.79438 1.17374 1.20982 1.17980 1.21273 0.87967 0.86684 0.76062 1.90685 1.16546 1.87984 1.51674 1.21950 0.97373 0.86858 1.09547 1.22181 0.92644 0.94170 0.85715 0.89475 1.31015 1.15950 1.09704 1.17909 1.05073 0.76103 0.76343 0.73493 1.93573 1.80152 1.39572 1.81457 1.93591 1.73082 1.87322 1.41709 1.30312 1.23149 1.02195 1.26590 1.20934 0.90718 0.97584 0.93886 1.21586 1.00628 0.97754 0.98342 1.21573 0.95393 0.92229 0.96040 1.21186 0.95617 1.01903 1.02167 1.18519 0.87116 0.85675 0.92858 1.85434 1.48378 1.49946 1.39540 0.93322 0.90366 0.86767 0.96387 0.93232 0.92345 0.85000 0.80870 0.79889 0.77352 0.83019 0.81288 0.81828 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.77 10.29 127.77 1.31 3.09 16 2 N -0.61 -22.73 2.86 -851.11 -2.43 -25.16 16 3 C 0.22 10.54 4.27 85.63 0.37 10.91 16 4 C -0.54 -31.30 9.94 25.60 0.25 -31.04 16 5 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 6 C 0.01 0.57 5.47 84.66 0.46 1.03 16 7 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 8 Si 0.95 44.22 27.47 68.60 1.88 46.10 16 9 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.26 -11.50 6.54 99.48 0.65 -10.85 16 12 C 0.49 18.03 7.55 87.66 0.66 18.69 16 13 O -0.59 -28.36 15.01 10.71 0.16 -28.20 16 14 C -0.12 -2.40 3.97 29.85 0.12 -2.28 16 15 C 0.11 2.50 2.22 30.87 0.07 2.57 16 16 H 0.09 2.22 7.94 -2.39 -0.02 2.20 16 17 C -0.61 -7.55 6.14 72.26 0.44 -7.10 16 18 S 2.51 52.24 5.40 -56.49 -0.30 51.94 16 19 O -0.95 -23.08 17.84 -127.69 -2.28 -25.35 16 20 O -0.96 -26.06 17.96 -127.69 -2.29 -28.35 16 21 C -0.74 -18.94 5.71 22.32 0.13 -18.82 16 22 C -0.01 -0.28 9.56 22.25 0.21 -0.07 16 23 C -0.16 -3.22 10.06 22.26 0.22 -3.00 16 24 C -0.03 -0.76 10.02 22.17 0.22 -0.54 16 25 C -0.19 -5.60 9.90 22.49 0.22 -5.38 16 26 C 0.21 6.14 6.52 22.64 0.15 6.29 16 27 O -0.32 -9.86 8.70 -70.51 -0.61 -10.48 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.73 7.89 -2.38 -0.02 1.71 16 30 H 0.11 1.42 6.44 -2.39 -0.02 1.41 16 31 H 0.02 0.94 6.48 -2.39 -0.02 0.92 16 32 H 0.05 2.11 7.32 -2.39 -0.02 2.09 16 33 H 0.27 15.75 8.31 -92.71 -0.77 14.97 16 34 H 0.13 2.17 8.11 -2.39 -0.02 2.15 16 35 H 0.17 1.52 7.40 -2.39 -0.02 1.50 16 36 H 0.18 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.21 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.12 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -95.41 356.18 0.27 -95.14 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.00 Total: 9.67 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 4.85 Total: -25.66 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -2.13 Total: -84.80 kcal Atomic # 8 Polarization: -87.36 SS G_CDS: -5.02 Total: -92.39 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.10 kcal Atomic # 16 Polarization: 52.24 SS G_CDS: -0.30 Total: 51.94 kcal Total: -95.41 0.27 -95.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433628756.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.190 kcal (2) G-P(sol) polarization free energy of solvation -95.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds