Wall clock time and date at job start Tue Mar 31 2020 22:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47406 * 2 1 4 4 C 1.52994 * 109.47609 * 239.99893 * 2 1 3 5 5 N 1.46496 * 109.47552 * 185.00156 * 4 2 1 6 6 C 1.34773 * 119.99908 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00531 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99798 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47052 * 180.02562 * 8 6 5 10 10 C 1.76205 * 99.99937 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99776 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00021 * 179.97438 * 10 9 8 13 13 N 1.31632 * 119.99974 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00127 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47071 * 60.00286 * 14 12 10 16 16 H 1.48494 * 109.47298 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47119 * 300.00435 * 14 12 10 18 18 N 1.46905 * 109.46815 * 119.99636 * 2 1 3 19 19 C 1.46894 * 111.00224 * 275.00021 * 18 2 1 20 20 C 1.50705 * 109.47284 * 180.02562 * 19 18 2 21 21 C 1.33716 * 124.51105 * 90.00039 * 20 19 18 22 22 C 1.37605 * 115.09329 * 180.02562 * 21 20 19 23 23 C 1.36635 * 113.27459 * 359.97438 * 22 21 20 24 24 C 1.43196 * 125.46335 * 179.74187 * 23 22 21 25 25 N 8.52975 * 99.22715 * 112.72107 * 2 1 3 26 26 S 1.70613 * 124.50923 * 270.00558 * 20 19 18 27 27 H 1.08995 * 109.47052 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47195 * 300.00369 * 1 2 3 29 29 H 1.08999 * 109.46499 * 59.99854 * 1 2 3 30 30 H 1.09006 * 109.47184 * 305.00154 * 4 2 1 31 31 H 1.09004 * 109.46922 * 64.99917 * 4 2 1 32 32 H 0.97003 * 119.99608 * 0.02562 * 5 4 2 33 33 H 1.08999 * 109.47072 * 299.99876 * 8 6 5 34 34 H 1.09004 * 109.47316 * 59.99986 * 8 6 5 35 35 H 0.96997 * 120.00216 * 180.02562 * 13 12 10 36 36 H 1.00903 * 110.99947 * 151.04803 * 18 2 1 37 37 H 1.09000 * 109.47124 * 60.00573 * 19 18 2 38 38 H 1.08998 * 109.47635 * 300.00067 * 19 18 2 39 39 H 1.08000 * 122.45171 * 0.02562 * 21 20 19 40 40 H 1.08000 * 123.36222 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.1731 -1.4292 -2.1905 7 8 3.5701 -1.8842 -3.1393 8 6 5.6750 -1.5378 -2.1298 9 16 6.2784 -2.3910 -3.6078 10 6 8.0100 -2.3794 -3.2822 11 1 8.3862 -1.9268 -2.3766 12 6 8.8906 -2.9520 -4.1895 13 7 8.4321 -3.5033 -5.2934 14 14 10.7264 -2.9392 -3.8447 15 1 10.9970 -3.6630 -2.5765 16 1 11.4442 -3.6077 -4.9595 17 1 11.1976 -1.5360 -3.7240 18 7 2.0196 -0.6925 1.1995 19 6 2.0824 0.2226 2.3469 20 6 2.5884 -0.5215 3.5559 21 6 3.8775 -0.6291 3.8945 22 6 4.1219 -1.3542 5.0381 23 6 2.9860 -1.8365 5.6247 24 6 2.9382 -2.6261 6.8183 25 7 2.8978 -3.2519 7.7660 26 16 1.5927 -1.3388 4.6745 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.6055 -1.7198 -1.2951 31 1 1.7518 -0.1583 -2.1369 32 1 3.9824 -0.4628 -0.4314 33 1 6.1099 -0.5394 -2.0841 34 1 5.9630 -2.1007 -1.2419 35 1 9.0475 -3.9038 -5.9273 36 1 2.9173 -1.1205 1.0289 37 1 1.0870 0.6163 2.5526 38 1 2.7588 1.0462 2.1183 39 1 4.6689 -0.1797 3.3130 40 1 5.1125 -1.5244 5.4332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480427682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:18 Heat of formation + Delta-G solvation = 23.779860 kcal Electronic energy + Delta-G solvation = -22754.092139 eV Core-core repulsion = 19207.886173 eV Total energy + Delta-G solvation = -3546.205966 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.60743 -38.88254 -37.61337 -36.69798 -34.19465 -32.45750 -32.36175 -29.91115 -29.34601 -26.82529 -25.85258 -25.35723 -23.52707 -21.38001 -21.02592 -20.50101 -18.75931 -17.93971 -17.09548 -16.55346 -16.31081 -16.24285 -15.54938 -14.98102 -14.95990 -14.82827 -14.49508 -14.22237 -13.95123 -13.87852 -13.53688 -13.26138 -13.09914 -12.97629 -12.81877 -12.65828 -12.53657 -12.39100 -12.11516 -11.96703 -11.74715 -11.40547 -11.21151 -11.07394 -11.06014 -10.79159 -9.85706 -9.49038 -9.28332 -9.09541 -9.07148 -9.00443 -8.92669 -8.27692 -6.53332 -6.24095 -3.95185 -0.04612 0.71180 1.38249 1.87925 2.49234 2.89398 2.95136 3.02093 3.21459 3.25258 3.27985 3.49904 3.57958 3.71702 4.17782 4.18105 4.37957 4.58977 4.76456 4.84297 4.92594 4.98752 5.07221 5.09212 5.11018 5.39462 5.43054 5.45110 5.50165 5.57420 5.58737 5.77931 5.81448 5.83003 5.93417 6.07435 6.43618 6.47661 6.83980 7.01947 7.54155 7.56851 8.32126 8.52009 9.21045 10.83240 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.010396 B = 0.002324 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.701958 B =12046.982270 C =14262.726747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.075 3.925 3 H 0.054 0.946 4 C 0.118 3.882 5 N -0.743 5.743 6 C 0.533 3.467 7 O -0.513 6.513 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.682 5.682 19 C 0.124 3.876 20 C -0.192 4.192 21 C -0.144 4.144 22 C -0.055 4.055 23 C -0.178 4.178 24 C 0.282 3.718 25 N -0.408 5.408 26 S 0.275 5.725 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.392 0.608 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.269 0.731 36 H 0.350 0.650 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.149 0.851 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.133 11.412 19.679 27.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 H 0.072 0.928 4 C -0.006 4.006 5 N -0.399 5.399 6 C 0.319 3.681 7 O -0.387 6.387 8 C -0.305 4.305 9 S 0.168 5.832 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 N -0.318 5.318 19 C -0.006 4.006 20 C -0.313 4.313 21 C -0.175 4.175 22 C -0.091 4.091 23 C -0.299 4.299 24 C -0.033 4.033 25 N -0.086 5.086 26 S 0.544 5.456 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.226 0.774 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.171 0.829 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.167 0.833 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.394 9.124 19.628 28.405 hybrid contribution 4.608 1.691 0.941 4.998 sum -13.786 10.815 20.570 27.021 Atomic orbital electron populations 1.21748 0.93167 1.03122 1.01716 1.21808 0.96974 0.96169 0.88556 0.92792 1.21516 0.80454 1.01770 0.96909 1.46040 1.07116 1.62257 1.24485 1.20301 0.89499 0.76658 0.81598 1.90716 1.69866 1.45659 1.32414 1.23535 0.93458 1.05643 1.07827 1.85425 1.04626 1.73142 1.20025 1.22815 0.91509 1.44473 1.09691 0.90986 1.24992 0.99599 0.94520 0.94453 1.70003 1.35564 1.35319 1.09352 0.86226 0.82753 0.78459 0.78074 1.19912 1.20800 1.19955 1.60571 1.34595 1.32673 1.03921 1.20491 1.01311 0.92457 0.86374 1.24176 0.98159 1.05990 1.02949 1.19952 0.96283 1.02945 0.98338 1.20719 0.98349 0.95597 0.94424 1.20459 0.99580 1.11067 0.98805 1.24341 0.94448 0.92777 0.91768 1.81335 1.06503 1.09932 1.10798 1.83252 1.05184 1.44005 1.13178 0.91344 0.92412 0.91905 0.90475 0.90717 0.77399 0.89303 0.89185 0.92092 0.82940 0.89362 0.92458 0.83341 0.82912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.42 37.16 0.35 -0.47 16 2 C 0.07 0.49 2.81 -67.71 -0.19 0.30 16 3 H 0.05 0.31 7.80 -51.93 -0.40 -0.09 16 4 C 0.12 1.17 5.31 -4.05 -0.02 1.15 16 5 N -0.74 -8.57 4.99 -60.30 -0.30 -8.87 16 6 C 0.53 9.27 7.85 -10.98 -0.09 9.19 16 7 O -0.51 -11.18 15.86 5.56 0.09 -11.09 16 8 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 11 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 14 Si 0.92 21.05 29.55 -169.99 -5.02 16.02 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 18 N -0.68 -4.37 6.29 -107.99 -0.68 -5.04 16 19 C 0.12 0.59 5.91 -4.98 -0.03 0.56 16 20 C -0.19 -1.04 5.79 -35.89 -0.21 -1.25 16 21 C -0.14 -0.76 10.00 -41.40 -0.41 -1.18 16 22 C -0.05 -0.32 10.24 -40.39 -0.41 -0.73 16 23 C -0.18 -1.26 6.32 -38.24 -0.24 -1.50 16 24 C 0.28 2.62 15.83 -22.46 -0.36 2.27 16 25 N -0.41 -4.73 18.54 41.85 0.78 -3.95 16 26 S 0.28 1.58 23.01 -107.50 -2.47 -0.89 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.28 7.45 -51.93 -0.39 -0.10 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.39 3.33 7.37 -40.82 -0.30 3.02 16 33 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 34 H 0.09 1.57 8.14 -51.91 -0.42 1.14 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.35 2.45 6.70 -39.29 -0.26 2.19 16 37 H 0.09 0.36 7.44 -51.93 -0.39 -0.02 16 38 H 0.06 0.22 8.05 -51.93 -0.42 -0.20 16 39 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -34.90 379.88 -9.64 -44.54 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.09 Total: -0.52 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.19 Total: -7.06 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.53 Total: -42.96 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -4.69 Total: -4.66 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.90 -9.64 -44.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480427682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.322 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds