Wall clock time and date at job start Tue Mar 31 2020 22:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47406 * 2 1 4 4 C 1.52994 * 109.47609 * 239.99893 * 2 1 3 5 5 N 1.46496 * 109.47552 * 185.00156 * 4 2 1 6 6 C 1.34773 * 119.99908 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00531 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99798 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47052 * 180.02562 * 8 6 5 10 10 C 1.76205 * 99.99937 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99776 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00021 * 179.97438 * 10 9 8 13 13 N 1.31632 * 119.99974 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00127 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47071 * 60.00286 * 14 12 10 16 16 H 1.48494 * 109.47298 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47119 * 300.00435 * 14 12 10 18 18 N 1.46905 * 109.46815 * 119.99636 * 2 1 3 19 19 C 1.46894 * 111.00224 * 275.00021 * 18 2 1 20 20 C 1.50705 * 109.47284 * 180.02562 * 19 18 2 21 21 C 1.33716 * 124.51105 * 90.00039 * 20 19 18 22 22 C 1.37605 * 115.09329 * 180.02562 * 21 20 19 23 23 C 1.36635 * 113.27459 * 359.97438 * 22 21 20 24 24 C 1.43196 * 125.46335 * 179.74187 * 23 22 21 25 25 N 8.52975 * 99.22715 * 112.72107 * 2 1 3 26 26 S 1.70613 * 124.50923 * 270.00558 * 20 19 18 27 27 H 1.08995 * 109.47052 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47195 * 300.00369 * 1 2 3 29 29 H 1.08999 * 109.46499 * 59.99854 * 1 2 3 30 30 H 1.09006 * 109.47184 * 305.00154 * 4 2 1 31 31 H 1.09004 * 109.46922 * 64.99917 * 4 2 1 32 32 H 0.97003 * 119.99608 * 0.02562 * 5 4 2 33 33 H 1.08999 * 109.47072 * 299.99876 * 8 6 5 34 34 H 1.09004 * 109.47316 * 59.99986 * 8 6 5 35 35 H 0.96997 * 120.00216 * 180.02562 * 13 12 10 36 36 H 1.00903 * 110.99947 * 151.04803 * 18 2 1 37 37 H 1.09000 * 109.47124 * 60.00573 * 19 18 2 38 38 H 1.08998 * 109.47635 * 300.00067 * 19 18 2 39 39 H 1.08000 * 122.45171 * 0.02562 * 21 20 19 40 40 H 1.08000 * 123.36222 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.1731 -1.4292 -2.1905 7 8 3.5701 -1.8842 -3.1393 8 6 5.6750 -1.5378 -2.1298 9 16 6.2784 -2.3910 -3.6078 10 6 8.0100 -2.3794 -3.2822 11 1 8.3862 -1.9268 -2.3766 12 6 8.8906 -2.9520 -4.1895 13 7 8.4321 -3.5033 -5.2934 14 14 10.7264 -2.9392 -3.8447 15 1 10.9970 -3.6630 -2.5765 16 1 11.4442 -3.6077 -4.9595 17 1 11.1976 -1.5360 -3.7240 18 7 2.0196 -0.6925 1.1995 19 6 2.0824 0.2226 2.3469 20 6 2.5884 -0.5215 3.5559 21 6 3.8775 -0.6291 3.8945 22 6 4.1219 -1.3542 5.0381 23 6 2.9860 -1.8365 5.6247 24 6 2.9382 -2.6261 6.8183 25 7 2.8978 -3.2519 7.7660 26 16 1.5927 -1.3388 4.6745 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.6055 -1.7198 -1.2951 31 1 1.7518 -0.1583 -2.1369 32 1 3.9824 -0.4628 -0.4314 33 1 6.1099 -0.5394 -2.0841 34 1 5.9630 -2.1007 -1.2419 35 1 9.0475 -3.9038 -5.9273 36 1 2.9173 -1.1205 1.0289 37 1 1.0870 0.6163 2.5526 38 1 2.7588 1.0462 2.1183 39 1 4.6689 -0.1797 3.3130 40 1 5.1125 -1.5244 5.4332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480427682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:17 Heat of formation + Delta-G solvation = -0.550189 kcal Electronic energy + Delta-G solvation = -22755.147169 eV Core-core repulsion = 19207.886173 eV Total energy + Delta-G solvation = -3547.260996 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.75121 -39.45761 -38.35921 -37.43095 -35.15978 -34.55958 -33.07583 -30.96913 -30.16238 -27.72448 -27.31391 -26.47318 -23.97724 -21.87228 -21.79887 -21.61539 -19.86639 -19.19614 -17.97320 -17.52544 -17.27195 -17.01647 -16.85693 -16.33312 -16.08935 -15.84084 -15.44819 -15.17613 -14.82918 -14.60499 -14.47021 -14.32451 -14.17717 -13.98239 -13.67874 -13.36157 -13.22900 -13.14708 -13.05957 -12.84540 -12.83503 -12.71544 -12.55783 -12.39265 -11.91723 -11.74243 -11.67516 -11.10774 -10.95058 -10.24543 -10.13789 -9.76640 -9.50014 -9.37206 -8.64069 -8.32435 -6.10170 -0.53183 0.22351 0.95350 1.29053 1.41458 1.45418 1.49078 1.58200 1.63735 1.81897 2.24945 2.26414 2.31153 2.90070 3.01801 3.15920 3.35015 3.71664 3.80089 3.99787 4.21085 4.24039 4.33621 4.40902 4.43376 4.54184 4.61135 4.68422 4.73934 4.89995 4.98964 5.04814 5.08571 5.15140 5.36651 5.41597 5.43925 5.50618 5.98568 6.21728 6.32520 6.33907 6.46672 7.09015 7.25006 8.76378 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.010396 B = 0.002324 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.701958 B =12046.982270 C =14262.726747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.088 3.912 3 H 0.073 0.927 4 C 0.117 3.883 5 N -0.713 5.713 6 C 0.535 3.465 7 O -0.565 6.565 8 C -0.129 4.129 9 S -0.154 6.154 10 C -0.544 4.544 11 H 0.085 0.915 12 C 0.012 3.988 13 N -0.912 5.912 14 Si 0.997 3.003 15 H -0.262 1.262 16 H -0.281 1.281 17 H -0.261 1.261 18 N -0.692 5.692 19 C 0.124 3.876 20 C -0.187 4.187 21 C -0.147 4.147 22 C -0.046 4.046 23 C -0.205 4.205 24 C 0.303 3.697 25 N -0.460 5.460 26 S 0.281 5.719 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.412 0.588 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.270 0.730 36 H 0.346 0.654 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.168 0.832 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.407 13.598 21.195 29.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 H 0.091 0.909 4 C -0.007 4.007 5 N -0.368 5.368 6 C 0.321 3.679 7 O -0.443 6.443 8 C -0.280 4.280 9 S 0.073 5.927 10 C -0.692 4.692 11 H 0.103 0.897 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.819 3.181 15 H -0.186 1.186 16 H -0.207 1.207 17 H -0.186 1.186 18 N -0.327 5.327 19 C -0.006 4.006 20 C -0.308 4.308 21 C -0.178 4.178 22 C -0.083 4.083 23 C -0.326 4.326 24 C -0.012 4.012 25 N -0.139 5.139 26 S 0.550 5.450 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.249 0.751 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.167 0.833 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.186 0.814 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -17.692 11.347 21.214 29.863 hybrid contribution 4.261 1.103 0.498 4.429 sum -13.432 12.450 21.712 28.405 Atomic orbital electron populations 1.21748 0.92539 1.02660 1.02698 1.21702 0.97272 0.96368 0.86807 0.90891 1.21637 0.78850 1.01346 0.98826 1.45712 1.07911 1.59924 1.23268 1.20047 0.88871 0.76877 0.82099 1.90707 1.70477 1.48328 1.34795 1.23373 0.94668 1.05836 1.04162 1.85632 1.05870 1.75251 1.25983 1.23171 0.91650 1.44296 1.10109 0.89736 1.26123 1.05162 0.93888 0.94064 1.70179 1.37434 1.36580 1.10649 0.85022 0.75842 0.79087 0.78171 1.18635 1.20665 1.18573 1.60567 1.34474 1.33403 1.04216 1.20595 1.02439 0.92364 0.85212 1.24365 0.98200 1.05357 1.02867 1.20158 0.96753 1.02756 0.98156 1.20978 0.98556 0.94525 0.94225 1.20564 1.00843 1.12365 0.98818 1.24660 0.93006 0.91889 0.91604 1.81340 1.08171 1.11893 1.12473 1.83274 1.04770 1.43883 1.13050 0.92572 0.90880 0.91499 0.92168 0.91315 0.75061 0.87069 0.87002 0.92071 0.83334 0.88384 0.90566 0.81445 0.81696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.42 71.98 0.68 -0.58 16 2 C 0.09 0.88 2.81 44.91 0.13 1.00 16 3 H 0.07 0.51 7.80 -2.39 -0.02 0.50 16 4 C 0.12 2.12 5.31 86.38 0.46 2.58 16 5 N -0.71 -14.70 4.99 -463.07 -2.31 -17.01 16 6 C 0.54 18.03 7.85 87.66 0.69 18.72 16 7 O -0.57 -24.99 15.86 -3.02 -0.05 -25.03 16 8 C -0.13 -4.72 6.16 71.24 0.44 -4.28 16 9 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 10 C -0.54 -30.20 9.50 67.95 0.65 -29.55 16 11 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 12 C 0.01 0.69 5.49 84.86 0.47 1.16 16 13 N -0.91 -55.37 13.22 21.65 0.29 -55.08 16 14 Si 1.00 42.63 29.55 68.60 2.03 44.65 16 15 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 18 N -0.69 -6.55 6.29 -495.58 -3.12 -9.66 16 19 C 0.12 0.69 5.91 85.56 0.51 1.20 16 20 C -0.19 -1.44 5.79 24.66 0.14 -1.30 16 21 C -0.15 -1.08 10.00 21.09 0.21 -0.87 16 22 C -0.05 -0.44 10.24 21.74 0.22 -0.21 16 23 C -0.21 -2.64 6.32 23.14 0.15 -2.49 16 24 C 0.30 5.59 15.83 88.33 1.40 6.99 16 25 N -0.46 -10.92 18.54 19.01 0.35 -10.57 16 26 S 0.28 2.74 23.01 -56.49 -1.30 1.44 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.47 7.45 -2.39 -0.02 0.45 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.41 5.40 7.37 -92.71 -0.68 4.71 16 33 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 34 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 35 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.35 3.64 6.70 -89.69 -0.60 3.04 16 37 H 0.10 0.41 7.44 -2.39 -0.02 0.39 16 38 H 0.08 0.20 8.05 -2.39 -0.02 0.18 16 39 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 40 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -79.17 379.88 0.66 -78.50 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -0.19 Total: 9.90 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 6.13 Total: -7.65 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -4.79 Total: -92.33 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -5.59 SS G_CDS: -2.46 Total: -8.05 kcal Total: -79.17 0.66 -78.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480427682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.954 kcal (2) G-P(sol) polarization free energy of solvation -79.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds