Wall clock time and date at job start Tue Mar 31 2020 23:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42105 * 108.57969 * 2 1 4 4 O 1.42109 * 108.57890 * 228.97710 * 2 1 3 5 5 C 1.81398 * 101.92130 * 114.49033 * 2 1 3 6 6 C 1.53000 * 109.47033 * 184.81989 * 5 2 1 7 7 C 1.50705 * 113.08065 * 78.25174 * 6 5 2 8 8 O 1.21282 * 120.00190 * 353.70560 * 7 6 5 9 9 N 1.34781 * 119.99654 * 173.71189 * 7 6 5 10 10 C 1.39244 * 119.99547 * 184.07425 * 9 7 6 11 11 C 1.39477 * 119.82949 * 323.76921 * 10 9 7 12 12 C 1.36379 * 120.16714 * 179.76458 * 11 10 9 13 13 C 1.40871 * 119.82630 * 0.51603 * 12 11 10 14 14 C 1.41152 * 120.16794 * 179.71842 * 13 12 11 15 15 H 1.07994 * 120.00136 * 160.04860 * 14 13 12 16 16 C 1.39909 * 119.99474 * 340.05201 * 14 13 12 17 17 N 1.30870 * 120.00251 * 326.88027 * 16 14 13 18 18 Si 1.86803 * 119.99601 * 146.88317 * 16 14 13 19 19 H 1.48499 * 109.47297 * 94.99368 * 18 16 14 20 20 H 1.48507 * 109.46866 * 214.99250 * 18 16 14 21 21 H 1.48499 * 109.47066 * 334.98696 * 18 16 14 22 22 C 1.40872 * 119.67131 * 359.73981 * 13 12 11 23 23 C 1.36375 * 119.82902 * 0.02562 * 22 13 12 24 24 C 1.54035 * 113.81795 * 306.34433 * 6 5 2 25 25 O 1.44177 * 85.51733 * 223.19462 * 24 6 5 26 26 C 1.44180 * 93.33951 * 24.19112 * 25 24 6 27 27 H 1.08994 * 109.47121 * 305.51310 * 1 2 3 28 28 H 1.09003 * 109.46996 * 65.51518 * 1 2 3 29 29 H 1.08998 * 109.47348 * 185.50670 * 1 2 3 30 30 H 1.09000 * 109.47302 * 64.81866 * 5 2 1 31 31 H 1.09000 * 109.47192 * 304.81637 * 5 2 1 32 32 H 0.97000 * 120.00296 * 4.06361 * 9 7 6 33 33 H 1.07998 * 119.92102 * 0.02648 * 11 10 9 34 34 H 1.07994 * 120.08986 * 180.25033 * 12 11 10 35 35 H 0.96999 * 120.00157 * 180.02562 * 17 16 14 36 36 H 1.07999 * 120.08668 * 179.97438 * 22 13 12 37 37 H 1.08000 * 119.91886 * 179.97438 * 23 22 13 38 38 H 1.09000 * 113.86061 * 337.34120 * 24 6 5 39 39 H 1.08996 * 113.86497 * 109.04830 * 24 6 5 40 40 H 1.08995 * 113.86530 * 221.65535 * 26 25 24 41 41 H 1.09006 * 113.98088 * 89.96862 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1887 -0.7357 1.6152 6 6 3.7004 -0.7092 1.8493 7 6 4.2093 0.6453 2.2705 8 8 3.4597 1.5987 2.2803 9 7 5.4976 0.7973 2.6363 10 6 5.9473 2.0285 3.1062 11 6 5.4428 3.2071 2.5568 12 6 5.8749 4.4167 3.0151 13 6 6.8412 4.4737 4.0385 14 6 7.2978 5.7218 4.5142 15 1 7.7726 5.7900 5.4818 16 6 7.1352 6.8704 3.7321 17 7 7.1921 6.7871 2.4273 18 14 6.8369 8.5229 4.5505 19 1 8.1283 9.2399 4.7034 20 1 5.9177 9.3324 3.7107 21 1 6.2274 8.3102 5.8878 22 6 7.3499 3.2790 4.5847 23 6 6.9046 2.0768 4.1194 24 6 4.5171 -1.3551 0.7142 25 8 5.2886 -1.9643 1.7688 26 6 4.2145 -1.8668 2.7257 27 1 -0.3633 0.5969 0.8365 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3634 -1.0229 0.0986 30 1 1.8359 -1.7669 1.6354 31 1 1.6896 -0.1656 2.3987 32 1 6.1115 0.0489 2.5723 33 1 4.7051 3.1617 1.7693 34 1 5.4804 5.3285 2.5916 35 1 7.0797 7.5835 1.8851 36 1 8.0912 3.3149 5.3692 37 1 7.2940 1.1600 4.5367 38 1 3.9510 -2.0675 0.1139 39 1 5.0790 -0.6402 0.1133 40 1 4.5365 -1.5579 3.7201 41 1 3.5550 -2.7346 2.7414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548617469.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:30 Heat of formation + Delta-G solvation = -78.103544 kcal Electronic energy + Delta-G solvation = -27705.493761 eV Core-core repulsion = 23679.824177 eV Total energy + Delta-G solvation = -4025.669584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.52573 -38.87631 -37.18132 -36.97606 -36.04707 -34.51372 -32.97023 -32.73681 -29.93957 -29.44903 -29.10565 -27.01547 -26.67887 -25.04409 -22.84455 -21.28637 -20.54489 -19.12654 -18.87605 -17.61822 -17.31791 -17.15056 -16.89526 -16.17910 -15.88304 -15.69330 -15.55750 -15.16840 -14.86731 -14.57516 -13.99896 -13.85336 -13.54185 -13.44727 -13.22429 -13.00019 -12.70189 -12.56060 -12.16609 -12.04816 -12.03274 -11.94185 -11.89471 -11.27917 -11.24099 -11.14039 -11.09377 -11.06772 -10.63877 -10.44637 -10.34622 -9.98542 -9.61596 -9.32173 -8.88984 -8.85599 -7.48577 -7.13745 -6.83009 -4.24175 -0.20760 2.45381 2.54767 2.87895 3.07675 3.11650 3.14103 3.16931 3.26443 3.41670 3.49556 3.84433 3.91335 4.01249 4.16209 4.47781 4.52996 4.54493 4.71837 4.85264 4.95655 5.00688 5.20727 5.31166 5.35943 5.45937 5.59109 5.70154 5.73071 6.19347 6.47277 6.84597 7.00390 7.08751 7.13201 7.32876 7.61453 7.69165 7.96769 8.07872 8.23037 8.32565 8.61697 8.74894 8.87252 9.03412 10.04544 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.003176 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.921245 B = 8815.066223 C = 9950.748291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.413 3.587 3 O -0.898 6.898 4 O -0.944 6.944 5 C -0.596 4.596 6 C -0.143 4.143 7 C 0.506 3.494 8 O -0.498 6.498 9 N -0.637 5.637 10 C -0.026 4.026 11 C -0.075 4.075 12 C -0.176 4.176 13 C 0.112 3.888 14 C -0.464 4.464 15 H 0.081 0.919 16 C 0.088 3.912 17 N -0.763 5.763 18 Si 0.896 3.104 19 H -0.270 1.270 20 H -0.273 1.273 21 H -0.257 1.257 22 C -0.225 4.225 23 C -0.092 4.092 24 C 0.031 3.969 25 O -0.367 6.367 26 C 0.061 3.939 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.400 0.600 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.284 0.716 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.825 -16.191 -2.847 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.593 3.407 3 O -0.895 6.895 4 O -0.941 6.941 5 C -0.724 4.724 6 C -0.147 4.147 7 C 0.289 3.711 8 O -0.372 6.372 9 N -0.280 5.280 10 C -0.118 4.118 11 C -0.094 4.094 12 C -0.195 4.195 13 C 0.109 3.891 14 C -0.492 4.492 15 H 0.099 0.901 16 C -0.135 4.135 17 N -0.385 5.385 18 Si 0.719 3.281 19 H -0.195 1.195 20 H -0.198 1.198 21 H -0.181 1.181 22 C -0.245 4.245 23 C -0.112 4.112 24 C -0.046 4.046 25 O -0.285 6.285 26 C -0.017 4.017 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.143 0.857 30 H 0.156 0.844 31 H 0.166 0.834 32 H 0.235 0.765 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.533 -15.182 -3.708 19.423 hybrid contribution -0.699 0.128 0.879 1.131 sum -12.232 -15.053 -2.829 19.602 Atomic orbital electron populations 1.30308 1.27359 1.11146 1.11958 1.08190 0.78508 0.76664 0.77336 1.93747 1.77735 1.32675 1.85318 1.93587 1.79154 1.67687 1.53646 1.30201 1.02470 1.14066 1.25621 1.23723 0.92952 0.97748 1.00309 1.19388 0.83186 0.88035 0.80445 1.90791 1.55926 1.39370 1.51144 1.42840 1.08997 1.13163 1.63040 1.17072 1.07491 0.83397 1.03791 1.20542 0.98849 0.91486 0.98557 1.20746 1.00683 0.95893 1.02221 1.17606 0.89140 0.92201 0.90160 1.19509 1.34685 0.91487 1.03490 0.90052 1.25964 0.91635 1.01677 0.94208 1.69952 1.30085 1.32328 1.06123 0.86508 0.79296 0.81086 0.81172 1.19483 1.19829 1.18099 1.20430 1.05666 0.91976 1.06404 1.20022 0.98475 0.96885 0.95834 1.24533 0.92625 0.96474 0.90975 1.89733 1.32192 1.84147 1.22436 1.24080 0.88167 0.94534 0.94883 0.85144 0.85276 0.85695 0.84443 0.83409 0.76483 0.87196 0.87425 0.90477 0.88714 0.89301 0.86960 0.87578 0.87824 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.98 10.62 101.05 1.07 -2.90 16 2 S 2.41 24.96 5.00 -107.50 -0.54 24.43 16 3 O -0.90 -14.62 15.86 -65.93 -1.05 -15.67 16 4 O -0.94 -11.33 16.16 -57.83 -0.93 -12.26 16 5 C -0.60 -5.09 5.03 37.16 0.19 -4.91 16 6 C -0.14 -1.72 0.99 -154.58 -0.15 -1.87 16 7 C 0.51 8.91 6.63 -10.98 -0.07 8.84 16 8 O -0.50 -10.51 11.59 -14.83 -0.17 -10.68 16 9 N -0.64 -11.84 5.12 -9.74 -0.05 -11.89 16 10 C -0.03 -0.59 6.29 -83.57 -0.53 -1.12 16 11 C -0.07 -1.92 8.60 -39.79 -0.34 -2.26 16 12 C -0.18 -4.80 8.75 -39.26 -0.34 -5.14 16 13 C 0.11 3.03 5.59 -106.80 -0.60 2.43 16 14 C -0.46 -12.39 8.94 -37.85 -0.34 -12.73 16 15 H 0.08 2.08 8.02 -52.49 -0.42 1.65 16 16 C 0.09 2.21 4.78 -17.34 -0.08 2.13 16 17 N -0.76 -19.88 11.69 55.55 0.65 -19.23 16 18 Si 0.90 18.55 29.66 -169.99 -5.04 13.50 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 C -0.22 -5.54 9.74 -39.26 -0.38 -5.93 16 23 C -0.09 -2.07 9.90 -39.79 -0.39 -2.47 16 24 C 0.03 0.36 6.99 37.61 0.26 0.63 16 25 O -0.37 -4.36 11.09 -35.23 -0.39 -4.75 16 26 C 0.06 0.59 8.02 37.61 0.30 0.89 16 27 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.13 0.73 8.14 -51.92 -0.42 0.30 16 29 H 0.12 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.14 0.54 7.81 -51.92 -0.41 0.14 16 31 H 0.15 1.18 7.78 -51.92 -0.40 0.78 16 32 H 0.40 6.40 7.17 -40.82 -0.29 6.11 16 33 H 0.11 2.89 6.30 -52.49 -0.33 2.56 16 34 H 0.11 3.03 6.41 -52.49 -0.34 2.70 16 35 H 0.28 6.68 8.30 -40.82 -0.34 6.35 16 36 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.11 1.07 6.97 -51.93 -0.36 0.71 16 39 H 0.11 1.34 8.09 -51.93 -0.42 0.92 16 40 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 41 H 0.10 0.59 7.87 -51.93 -0.41 0.18 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -35.89 351.72 -8.68 -44.57 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.05 Total: 11.09 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -1.41 Total: -24.41 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.60 Total: -31.13 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -2.54 Total: -43.36 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.04 Total: 13.50 kcal Atomic # 16 Polarization: 24.96 SS G_CDS: -0.54 Total: 24.43 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.89 -8.68 -44.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548617469.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.536 kcal (2) G-P(sol) polarization free energy of solvation -35.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds