Wall clock time and date at job start Tue Mar 31 2020 23:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42105 * 108.57969 * 2 1 4 4 O 1.42109 * 108.57890 * 228.97710 * 2 1 3 5 5 C 1.81398 * 101.92130 * 114.49033 * 2 1 3 6 6 C 1.53000 * 109.47033 * 184.81989 * 5 2 1 7 7 C 1.50705 * 113.08065 * 78.25174 * 6 5 2 8 8 O 1.21282 * 120.00190 * 353.70560 * 7 6 5 9 9 N 1.34781 * 119.99654 * 173.71189 * 7 6 5 10 10 C 1.39244 * 119.99547 * 184.07425 * 9 7 6 11 11 C 1.39477 * 119.82949 * 323.76921 * 10 9 7 12 12 C 1.36379 * 120.16714 * 179.76458 * 11 10 9 13 13 C 1.40871 * 119.82630 * 0.51603 * 12 11 10 14 14 C 1.41152 * 120.16794 * 179.71842 * 13 12 11 15 15 H 1.07994 * 120.00136 * 160.04860 * 14 13 12 16 16 C 1.39909 * 119.99474 * 340.05201 * 14 13 12 17 17 N 1.30870 * 120.00251 * 326.88027 * 16 14 13 18 18 Si 1.86803 * 119.99601 * 146.88317 * 16 14 13 19 19 H 1.48499 * 109.47297 * 94.99368 * 18 16 14 20 20 H 1.48507 * 109.46866 * 214.99250 * 18 16 14 21 21 H 1.48499 * 109.47066 * 334.98696 * 18 16 14 22 22 C 1.40872 * 119.67131 * 359.73981 * 13 12 11 23 23 C 1.36375 * 119.82902 * 0.02562 * 22 13 12 24 24 C 1.54035 * 113.81795 * 306.34433 * 6 5 2 25 25 O 1.44177 * 85.51733 * 223.19462 * 24 6 5 26 26 C 1.44180 * 93.33951 * 24.19112 * 25 24 6 27 27 H 1.08994 * 109.47121 * 305.51310 * 1 2 3 28 28 H 1.09003 * 109.46996 * 65.51518 * 1 2 3 29 29 H 1.08998 * 109.47348 * 185.50670 * 1 2 3 30 30 H 1.09000 * 109.47302 * 64.81866 * 5 2 1 31 31 H 1.09000 * 109.47192 * 304.81637 * 5 2 1 32 32 H 0.97000 * 120.00296 * 4.06361 * 9 7 6 33 33 H 1.07998 * 119.92102 * 0.02648 * 11 10 9 34 34 H 1.07994 * 120.08986 * 180.25033 * 12 11 10 35 35 H 0.96999 * 120.00157 * 180.02562 * 17 16 14 36 36 H 1.07999 * 120.08668 * 179.97438 * 22 13 12 37 37 H 1.08000 * 119.91886 * 179.97438 * 23 22 13 38 38 H 1.09000 * 113.86061 * 337.34120 * 24 6 5 39 39 H 1.08996 * 113.86497 * 109.04830 * 24 6 5 40 40 H 1.08995 * 113.86530 * 221.65535 * 26 25 24 41 41 H 1.09006 * 113.98088 * 89.96862 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1887 -0.7357 1.6152 6 6 3.7004 -0.7092 1.8493 7 6 4.2093 0.6453 2.2705 8 8 3.4597 1.5987 2.2803 9 7 5.4976 0.7973 2.6363 10 6 5.9473 2.0285 3.1062 11 6 5.4428 3.2071 2.5568 12 6 5.8749 4.4167 3.0151 13 6 6.8412 4.4737 4.0385 14 6 7.2978 5.7218 4.5142 15 1 7.7726 5.7900 5.4818 16 6 7.1352 6.8704 3.7321 17 7 7.1921 6.7871 2.4273 18 14 6.8369 8.5229 4.5505 19 1 8.1283 9.2399 4.7034 20 1 5.9177 9.3324 3.7107 21 1 6.2274 8.3102 5.8878 22 6 7.3499 3.2790 4.5847 23 6 6.9046 2.0768 4.1194 24 6 4.5171 -1.3551 0.7142 25 8 5.2886 -1.9643 1.7688 26 6 4.2145 -1.8668 2.7257 27 1 -0.3633 0.5969 0.8365 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3634 -1.0229 0.0986 30 1 1.8359 -1.7669 1.6354 31 1 1.6896 -0.1656 2.3987 32 1 6.1115 0.0489 2.5723 33 1 4.7051 3.1617 1.7693 34 1 5.4804 5.3285 2.5916 35 1 7.0797 7.5835 1.8851 36 1 8.0912 3.3149 5.3692 37 1 7.2940 1.1600 4.5367 38 1 3.9510 -2.0675 0.1139 39 1 5.0790 -0.6402 0.1133 40 1 4.5365 -1.5579 3.7201 41 1 3.5550 -2.7346 2.7414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548617469.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:30 Heat of formation + Delta-G solvation = -105.853040 kcal Electronic energy + Delta-G solvation = -27706.697070 eV Core-core repulsion = 23679.824177 eV Total energy + Delta-G solvation = -4026.872893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.55523 -40.36345 -38.88799 -37.90127 -36.95745 -36.26323 -34.76569 -33.63793 -31.43176 -30.99570 -30.43952 -27.83090 -27.69774 -26.64274 -24.25213 -23.20505 -22.24490 -20.41700 -19.82171 -19.28971 -18.68670 -18.14102 -17.91543 -17.34469 -17.07979 -16.79575 -16.62870 -16.42152 -15.98912 -15.89187 -15.73383 -15.12886 -14.85522 -14.51201 -14.03207 -13.99975 -13.94688 -13.89217 -13.70846 -13.53811 -13.20697 -13.03729 -12.96300 -12.89307 -12.84307 -12.77865 -12.36208 -12.06825 -11.90284 -11.87936 -11.54305 -11.31461 -11.15423 -10.96218 -10.71637 -10.45524 -9.47683 -9.04600 -8.72040 -6.24263 -0.93011 0.78333 1.13085 1.32908 1.38843 1.51953 1.65077 1.85151 2.15736 2.16781 2.33679 2.61496 2.67400 3.05160 3.14107 3.34145 3.63691 3.74673 3.87174 4.08007 4.13465 4.25460 4.34614 4.40413 4.42113 4.48303 4.59909 4.68127 4.79396 4.92553 4.94303 4.94533 5.07915 5.17523 5.24788 5.42762 5.65457 5.83259 6.06716 6.07691 6.30325 6.62466 6.67617 6.87632 6.98471 7.34405 8.18075 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.003176 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.921245 B = 8815.066223 C = 9950.748291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.394 3.606 3 O -0.977 6.977 4 O -0.971 6.971 5 C -0.585 4.585 6 C -0.149 4.149 7 C 0.499 3.501 8 O -0.536 6.536 9 N -0.638 5.638 10 C -0.014 4.014 11 C -0.089 4.089 12 C -0.201 4.201 13 C 0.082 3.918 14 C -0.500 4.500 15 H 0.085 0.915 16 C 0.046 3.954 17 N -0.801 5.801 18 Si 0.974 3.026 19 H -0.254 1.254 20 H -0.268 1.268 21 H -0.256 1.256 22 C -0.234 4.234 23 C -0.087 4.087 24 C 0.032 3.968 25 O -0.383 6.383 26 C 0.071 3.929 27 H 0.144 0.856 28 H 0.134 0.866 29 H 0.166 0.834 30 H 0.198 0.802 31 H 0.156 0.844 32 H 0.414 0.586 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.293 0.707 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.464 -19.182 -1.497 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.582 3.418 3 O -0.975 6.975 4 O -0.968 6.968 5 C -0.715 4.715 6 C -0.154 4.154 7 C 0.285 3.715 8 O -0.413 6.413 9 N -0.283 5.283 10 C -0.107 4.107 11 C -0.110 4.110 12 C -0.221 4.221 13 C 0.080 3.920 14 C -0.527 4.527 15 H 0.103 0.897 16 C -0.173 4.173 17 N -0.424 5.424 18 Si 0.794 3.206 19 H -0.179 1.179 20 H -0.193 1.193 21 H -0.180 1.180 22 C -0.253 4.253 23 C -0.107 4.107 24 C -0.045 4.045 25 O -0.302 6.302 26 C -0.006 4.006 27 H 0.162 0.838 28 H 0.152 0.848 29 H 0.184 0.816 30 H 0.215 0.785 31 H 0.174 0.826 32 H 0.252 0.748 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.149 0.851 38 H 0.157 0.843 39 H 0.101 0.899 40 H 0.122 0.878 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.123 -18.205 -2.388 22.569 hybrid contribution -0.293 0.873 0.414 1.009 sum -13.415 -17.333 -1.974 22.007 Atomic orbital electron populations 1.30077 1.21436 1.14290 1.12991 1.08190 0.80744 0.74987 0.77882 1.93674 1.80615 1.36529 1.86645 1.93544 1.80933 1.67275 1.55032 1.30182 1.00024 1.17653 1.23599 1.23682 0.95207 0.94796 1.01672 1.20430 0.82264 0.90161 0.78654 1.90780 1.56777 1.41617 1.52086 1.42829 1.10170 1.11929 1.63409 1.17157 1.06407 0.84321 1.02839 1.20524 0.99168 0.92521 0.98740 1.20635 1.02148 0.95600 1.03738 1.17920 0.89680 0.93717 0.90714 1.19781 1.36412 0.92467 1.04063 0.89676 1.26878 0.90526 1.05412 0.94521 1.69981 1.30812 1.33901 1.07695 0.85336 0.79682 0.75899 0.79720 1.17853 1.19253 1.17979 1.20716 1.05874 0.92021 1.06725 1.20365 0.97510 0.97859 0.94938 1.24596 0.92456 0.96569 0.90923 1.89721 1.33427 1.84105 1.22937 1.24423 0.87683 0.94556 0.93924 0.83781 0.84756 0.81581 0.78461 0.82595 0.74808 0.88935 0.89766 0.89674 0.87129 0.85091 0.84260 0.89912 0.87758 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -5.52 10.62 113.37 1.20 -4.31 16 2 S 2.39 47.16 5.00 -56.49 -0.28 46.87 16 3 O -0.98 -33.89 15.86 -119.63 -1.90 -35.79 16 4 O -0.97 -22.31 16.16 -127.37 -2.06 -24.37 16 5 C -0.59 -7.99 5.03 71.98 0.36 -7.63 16 6 C -0.15 -3.26 0.99 -52.23 -0.05 -3.32 16 7 C 0.50 17.61 6.63 87.66 0.58 18.19 16 8 O -0.54 -23.51 11.59 16.46 0.19 -23.32 16 9 N -0.64 -23.68 5.12 -303.10 -1.55 -25.23 16 10 C -0.01 -0.66 6.29 38.56 0.24 -0.42 16 11 C -0.09 -4.89 8.60 22.13 0.19 -4.70 16 12 C -0.20 -11.75 8.75 22.48 0.20 -11.55 16 13 C 0.08 4.67 5.59 -21.27 -0.12 4.55 16 14 C -0.50 -27.70 8.94 23.39 0.21 -27.49 16 15 H 0.09 4.47 8.02 -2.91 -0.02 4.45 16 16 C 0.05 2.40 4.78 85.24 0.41 2.81 16 17 N -0.80 -43.79 11.69 21.82 0.26 -43.53 16 18 Si 0.97 38.95 29.66 68.60 2.03 40.99 16 19 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 20 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 22 C -0.23 -11.65 9.74 22.48 0.22 -11.43 16 23 C -0.09 -3.86 9.90 22.13 0.22 -3.64 16 24 C 0.03 0.69 6.99 72.27 0.51 1.19 16 25 O -0.38 -8.03 11.09 -148.98 -1.65 -9.69 16 26 C 0.07 1.06 8.02 72.27 0.58 1.64 16 27 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.17 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.20 0.24 7.81 -2.39 -0.02 0.22 16 31 H 0.16 2.00 7.78 -2.39 -0.02 1.98 16 32 H 0.41 12.85 7.17 -92.71 -0.66 12.19 16 33 H 0.09 5.30 6.30 -2.91 -0.02 5.28 16 34 H 0.08 5.16 6.41 -2.91 -0.02 5.15 16 35 H 0.29 14.37 8.30 -92.71 -0.77 13.60 16 36 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 37 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 38 H 0.14 2.26 6.97 -2.39 -0.02 2.24 16 39 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 40 H 0.10 1.57 8.09 -2.39 -0.02 1.55 16 41 H 0.15 0.79 7.87 -2.38 -0.02 0.77 16 Total: -1.00 -86.81 351.72 0.19 -86.62 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: 0.41 Total: 33.57 kcal Atomic # 6 Polarization: -50.86 SS G_CDS: 4.75 Total: -46.11 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: -1.30 Total: -68.77 kcal Atomic # 8 Polarization: -87.75 SS G_CDS: -5.42 Total: -93.17 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.99 kcal Atomic # 16 Polarization: 47.16 SS G_CDS: -0.28 Total: 46.87 kcal Total: -86.81 0.19 -86.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548617469.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.237 kcal (2) G-P(sol) polarization free energy of solvation -86.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds