Wall clock time and date at job start Tue Mar 31 2020 22:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99751 * 2 1 4 4 C 1.53002 * 109.47037 * 269.99883 * 3 2 1 5 5 N 1.46891 * 109.47144 * 180.02562 * 4 3 2 6 6 C 1.46908 * 111.00084 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47167 * 179.97438 * 6 5 4 8 8 C 1.33717 * 124.50749 * 90.02963 * 7 6 5 9 9 C 1.37618 * 115.09620 * 179.97438 * 8 7 6 10 10 C 1.36635 * 113.26559 * 359.97438 * 9 8 7 11 11 C 1.43200 * 125.45492 * 179.97438 * 10 9 8 12 12 N 9.33205 * 138.21135 * 154.83214 * 3 1 2 13 13 S 1.70609 * 124.51675 * 270.02464 * 7 6 5 14 14 C 1.34776 * 120.00232 * 179.97438 * 2 1 3 15 15 O 1.21272 * 120.00047 * 180.02562 * 14 2 1 16 16 C 1.50705 * 119.99581 * 359.97438 * 14 2 1 17 17 S 1.81002 * 109.46613 * 180.02562 * 16 14 2 18 18 C 1.76207 * 99.99663 * 180.02562 * 17 16 14 19 19 H 1.07988 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99541 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00444 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99825 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47099 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47557 * 119.99623 * 22 20 18 25 25 H 1.48502 * 109.47107 * 239.99977 * 22 20 18 26 26 H 1.09005 * 109.47098 * 90.00618 * 1 2 3 27 27 H 1.08999 * 109.46998 * 209.99705 * 1 2 3 28 28 H 1.08996 * 109.47431 * 330.00400 * 1 2 3 29 29 H 1.08994 * 109.47279 * 149.99929 * 3 2 1 30 30 H 1.08995 * 109.47291 * 29.99643 * 3 2 1 31 31 H 1.08999 * 109.47490 * 59.99755 * 4 3 2 32 32 H 1.09008 * 109.47124 * 300.00012 * 4 3 2 33 33 H 1.00903 * 111.00080 * 303.94827 * 5 4 3 34 34 H 1.09006 * 109.46788 * 59.99939 * 6 5 4 35 35 H 1.08994 * 109.47144 * 300.00023 * 6 5 4 36 36 H 1.08000 * 122.45621 * 359.97438 * 8 7 6 37 37 H 1.07992 * 123.36634 * 180.26508 * 9 8 7 38 38 H 1.09000 * 109.47459 * 300.00355 * 16 14 2 39 39 H 1.08997 * 109.46721 * 60.00639 * 16 14 2 40 40 H 0.96998 * 120.00149 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1874 2.9823 -1.4426 6 6 3.4512 3.4379 -2.8141 7 6 4.2043 4.7425 -2.7739 8 6 5.5372 4.8474 -2.7537 9 6 6.0209 6.1353 -2.7181 10 6 5.0355 7.0818 -2.7103 11 6 5.2444 8.4981 -2.6750 12 7 5.4090 9.6222 -2.6447 13 16 3.4700 6.2823 -2.7482 14 6 2.1389 -1.1672 0.0005 15 8 3.3517 -1.1671 0.0010 16 6 1.3854 -2.4723 0.0017 17 16 2.5617 -3.8480 0.0029 18 6 1.4415 -5.2082 0.0034 19 1 0.3764 -5.0305 0.0025 20 6 1.9284 -6.5080 0.0048 21 7 3.2267 -6.7246 0.0064 22 14 0.7409 -7.9501 0.0046 23 1 -0.6545 -7.4422 0.0033 24 1 0.9679 -8.7781 -1.2070 25 1 0.9654 -8.7763 1.2180 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 3.1498 1.1385 0.5138 30 1 1.6084 2.0284 0.5137 31 1 1.5001 1.8407 -1.9564 32 1 3.0416 0.9507 -1.9564 33 1 2.6918 3.6863 -0.9164 34 1 2.5058 3.5804 -3.3377 35 1 4.0470 2.6899 -3.3371 36 1 6.1868 3.9847 -2.7646 37 1 7.0740 6.3741 -2.7028 38 1 0.7590 -2.5294 0.8919 39 1 0.7585 -2.5306 -0.8881 40 1 3.5669 -7.6330 0.0071 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567466824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:41 Heat of formation + Delta-G solvation = 9.868197 kcal Electronic energy + Delta-G solvation = -22361.980612 eV Core-core repulsion = 18815.171391 eV Total energy + Delta-G solvation = -3546.809221 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.83318 -39.41563 -37.92747 -37.27635 -36.13906 -34.56849 -32.68754 -31.07961 -29.24360 -27.67624 -27.58670 -26.42690 -24.03776 -23.33512 -21.89000 -20.62506 -19.52771 -19.28549 -18.04526 -17.42056 -17.23566 -16.96003 -16.86548 -16.34902 -16.01922 -15.89928 -15.45506 -15.09250 -14.88330 -14.63666 -14.46852 -14.30800 -14.17844 -14.14636 -13.55590 -13.44987 -13.38415 -13.29114 -13.15211 -13.06726 -12.90501 -12.72363 -12.65599 -12.57014 -12.03086 -11.82372 -11.67115 -11.14344 -10.86945 -10.23719 -9.81889 -9.72037 -9.51532 -9.39063 -8.65192 -8.33130 -6.11127 -0.57687 0.16985 0.84177 1.27872 1.39237 1.42697 1.48587 1.58946 1.61556 1.79956 2.12669 2.24319 2.29124 2.86856 3.01247 3.24545 3.34311 3.72509 3.76119 4.07396 4.10890 4.21001 4.25808 4.36494 4.40309 4.49857 4.54041 4.58828 4.68470 4.72575 4.92238 4.96973 5.00297 5.03333 5.22712 5.39476 5.43738 5.58228 5.87922 6.21542 6.29149 6.32475 6.41344 7.08415 7.18995 8.76306 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.032796 B = 0.001596 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.549483 B =17535.167412 C =18019.128715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.611 5.611 3 C 0.119 3.881 4 C 0.057 3.943 5 N -0.686 5.686 6 C 0.128 3.872 7 C -0.190 4.190 8 C -0.136 4.136 9 C -0.043 4.043 10 C -0.195 4.195 11 C 0.304 3.696 12 N -0.456 5.456 13 S 0.276 5.724 14 C 0.529 3.471 15 O -0.562 6.562 16 C -0.124 4.124 17 S -0.155 6.155 18 C -0.544 4.544 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.256 1.256 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.112 0.888 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.353 0.647 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.157 0.843 37 H 0.169 0.831 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.576 25.889 -5.746 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.345 5.345 3 C -0.004 4.004 4 C -0.073 4.073 5 N -0.320 5.320 6 C -0.002 4.002 7 C -0.311 4.311 8 C -0.167 4.167 9 C -0.080 4.080 10 C -0.316 4.316 11 C -0.010 4.010 12 N -0.135 5.135 13 S 0.545 5.455 14 C 0.317 3.683 15 O -0.440 6.440 16 C -0.275 4.275 17 S 0.073 5.927 18 C -0.692 4.692 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.172 0.828 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.174 0.826 37 H 0.187 0.813 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.368 27.727 -5.634 28.798 hybrid contribution -0.808 -1.727 -0.265 1.925 sum -6.175 25.999 -5.899 27.366 Atomic orbital electron populations 1.22126 0.76751 1.04913 1.03331 1.47801 1.08525 1.04648 1.73521 1.21430 0.97858 0.84332 0.96757 1.22124 0.96650 0.91397 0.97176 1.60254 1.52482 1.05460 1.13790 1.20431 0.98566 0.90955 0.90268 1.24265 0.98897 1.00300 1.07617 1.20101 0.94590 0.98198 1.03768 1.20966 1.00811 0.90427 0.95811 1.20431 1.00317 0.88288 1.22551 1.24554 0.93082 0.91235 0.92157 1.81352 1.08119 1.12413 1.11570 1.83065 1.02741 0.93124 1.66545 1.20146 0.87288 0.85556 0.75329 1.90693 1.15675 1.87447 1.50150 1.23387 1.02694 0.95085 1.06348 1.85605 1.12728 0.97387 1.97019 1.23226 0.94635 0.92634 1.58705 0.89883 1.26114 0.97541 1.01675 0.93763 1.70190 1.14114 1.22391 1.48111 0.84916 0.78266 0.76804 0.78023 1.17907 1.19993 1.20037 0.91184 0.90875 0.87799 0.91812 0.86955 0.92914 0.93310 0.82814 0.92074 0.89078 0.82577 0.81331 0.87440 0.87497 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.29 127.77 1.31 2.33 16 2 N -0.61 -14.41 2.87 -846.77 -2.43 -16.85 16 3 C 0.12 2.29 5.71 86.38 0.49 2.78 16 4 C 0.06 0.97 6.01 86.31 0.52 1.48 16 5 N -0.69 -9.19 6.49 -517.93 -3.36 -12.55 16 6 C 0.13 1.39 6.11 85.55 0.52 1.91 16 7 C -0.19 -1.90 5.79 24.66 0.14 -1.76 16 8 C -0.14 -1.40 10.00 21.10 0.21 -1.19 16 9 C -0.04 -0.42 10.24 21.75 0.22 -0.20 16 10 C -0.20 -2.28 6.32 23.14 0.15 -2.14 16 11 C 0.30 5.03 15.83 88.33 1.40 6.43 16 12 N -0.46 -9.88 18.54 19.01 0.35 -9.53 16 13 S 0.28 2.35 23.01 -56.49 -1.30 1.05 16 14 C 0.53 19.05 7.69 87.66 0.67 19.73 16 15 O -0.56 -25.62 15.44 -3.00 -0.05 -25.67 16 16 C -0.12 -4.80 4.71 71.24 0.34 -4.46 16 17 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 18 C -0.54 -30.61 9.50 67.95 0.65 -29.97 16 19 H 0.08 4.32 7.80 -2.92 -0.02 4.30 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -55.53 13.22 21.65 0.29 -55.25 16 22 Si 1.00 42.90 29.55 68.60 2.03 44.93 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.07 1.15 6.44 -2.39 -0.02 1.13 16 28 H 0.10 0.81 7.89 -2.39 -0.02 0.79 16 29 H 0.06 1.67 7.42 -2.39 -0.02 1.65 16 30 H 0.11 1.26 7.89 -2.39 -0.02 1.24 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.35 3.26 8.72 -89.69 -0.78 2.48 16 34 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.11 3.75 7.40 -2.40 -0.02 3.73 16 39 H 0.11 3.72 8.11 -2.40 -0.02 3.70 16 40 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -79.83 381.53 1.75 -78.08 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.29 Total: 9.24 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 7.09 Total: -3.81 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -5.16 Total: -94.17 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.67 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -2.46 Total: -8.61 kcal Total: -79.83 1.75 -78.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567466824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.949 kcal (2) G-P(sol) polarization free energy of solvation -79.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds