Wall clock time and date at job start Tue Mar 31 2020 22:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46719 * 2 1 4 4 C 1.50701 * 109.47028 * 119.99826 * 2 1 3 5 5 C 1.33085 * 120.00195 * 237.34866 * 4 2 1 6 6 C 1.46958 * 119.99776 * 346.30886 * 5 4 2 7 7 O 1.21534 * 119.99780 * 359.54476 * 6 5 4 8 8 O 1.34795 * 119.99993 * 179.54884 * 6 5 4 9 9 N 1.46494 * 109.47247 * 239.99695 * 2 1 3 10 10 S 1.65600 * 120.00064 * 95.00166 * 9 2 1 11 11 O 1.42109 * 104.27527 * 308.92611 * 10 9 2 12 12 O 1.42104 * 104.27918 * 181.07373 * 10 9 2 13 13 C 1.81396 * 104.45026 * 64.99946 * 10 9 2 14 14 C 1.50696 * 109.47089 * 180.02562 * 13 10 9 15 15 C 1.38640 * 119.74796 * 270.24951 * 14 13 10 16 16 C 1.37616 * 120.24672 * 180.25775 * 15 14 13 17 17 C 1.40713 * 119.74699 * 359.47273 * 16 15 14 18 18 C 1.41393 * 120.24621 * 180.29650 * 17 16 15 19 19 H 1.08003 * 120.00010 * 25.34936 * 18 17 16 20 20 C 1.39947 * 120.00133 * 205.35163 * 18 17 16 21 21 N 1.30819 * 119.99956 * 7.25444 * 20 18 17 22 22 Si 1.86805 * 119.99861 * 187.25452 * 20 18 17 23 23 H 1.48503 * 109.46786 * 89.99689 * 22 20 18 24 24 H 1.48498 * 109.47111 * 209.99659 * 22 20 18 25 25 H 1.48499 * 109.47135 * 329.99863 * 22 20 18 26 26 C 1.40720 * 119.51085 * 0.27481 * 17 16 15 27 27 C 1.37619 * 119.74461 * 359.97438 * 26 17 16 28 28 H 1.09000 * 109.47399 * 60.00231 * 1 2 3 29 29 H 1.09006 * 109.47199 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47329 * 300.00172 * 1 2 3 31 31 H 1.07998 * 120.00226 * 57.34588 * 4 2 1 32 32 H 1.07998 * 120.00518 * 166.30438 * 5 4 2 33 33 H 0.96699 * 116.99753 * 179.97438 * 8 6 5 34 34 H 0.97006 * 120.00080 * 274.99745 * 9 2 1 35 35 H 1.08995 * 109.47477 * 60.00210 * 13 10 9 36 36 H 1.09004 * 109.46908 * 300.00154 * 13 10 9 37 37 H 1.07996 * 119.87706 * 0.02562 * 15 14 13 38 38 H 1.08001 * 120.12843 * 179.74292 * 16 15 14 39 39 H 0.96999 * 120.00075 * 180.02562 * 21 20 18 40 40 H 1.07998 * 120.12282 * 180.02562 * 26 17 16 41 41 H 1.07998 * 119.87435 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8404 -0.0800 2.0795 6 6 3.4832 1.1807 1.6834 7 8 3.2834 1.6434 0.5775 8 8 4.2945 1.8239 2.5466 9 7 2.0183 -0.6906 -1.1961 10 16 2.4122 0.1771 -2.5504 11 8 1.2751 0.9965 -2.7846 12 8 2.8123 -0.8077 -3.4936 13 6 3.8313 1.1871 -2.0440 14 6 4.2865 2.0322 -3.2058 15 6 5.2383 1.5383 -4.0845 16 6 5.6652 2.3033 -5.1457 17 6 5.1237 3.5869 -5.3437 18 6 5.5501 4.3794 -6.4342 19 1 5.9486 3.9085 -7.3208 20 6 5.4559 5.7740 -6.3648 21 7 5.1083 6.3511 -5.2435 22 14 5.8264 6.8113 -7.8736 23 1 4.5789 7.0141 -8.6533 24 1 6.3642 8.1287 -7.4487 25 1 6.8305 6.1158 -8.7181 26 6 4.1543 4.0758 -4.4485 27 6 3.7460 3.2954 -3.3911 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.7365 -1.7310 1.4234 32 1 3.0237 -0.4949 3.0596 33 1 4.6948 2.6493 2.2408 34 1 2.1110 -1.6563 -1.1947 35 1 4.6459 0.5362 -1.7267 36 1 3.5399 1.8342 -1.2166 37 1 5.6491 0.5510 -3.9333 38 1 6.4099 1.9183 -5.8267 39 1 5.0427 7.3177 -5.1955 40 1 3.7317 5.0594 -4.5912 41 1 3.0024 3.6687 -2.7025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592215749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:06 Heat of formation + Delta-G solvation = -113.210257 kcal Electronic energy + Delta-G solvation = -27383.404005 eV Core-core repulsion = 23356.212080 eV Total energy + Delta-G solvation = -4027.191925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65549 -37.69163 -37.51654 -36.46583 -35.95603 -35.32329 -34.07584 -32.83837 -31.35410 -29.54221 -29.33123 -27.71368 -25.23852 -24.15339 -22.44955 -21.05285 -20.67147 -20.08013 -18.92569 -18.63728 -17.37249 -17.26982 -17.07169 -15.99041 -15.82120 -15.45197 -15.23276 -14.81727 -14.57594 -14.22362 -13.91523 -13.72268 -13.59498 -13.42564 -12.95498 -12.62646 -12.25670 -12.13621 -12.01482 -11.93340 -11.70986 -11.63599 -11.50156 -11.45505 -11.34904 -11.24835 -11.10408 -10.72936 -10.61719 -10.32472 -10.12768 -9.85604 -9.76227 -9.39463 -9.35848 -9.18536 -7.52011 -7.30702 -6.74695 -4.45042 0.55167 0.85877 2.54918 2.70949 2.83681 3.03551 3.05664 3.08230 3.16404 3.24564 3.88570 4.22860 4.42249 4.60128 4.64405 4.80416 4.92278 5.07761 5.12138 5.24743 5.52389 5.55146 5.63592 5.67040 5.70232 5.82606 6.03758 6.19326 6.28969 6.33647 6.36826 6.62243 6.92242 6.99536 7.09463 7.20448 7.32682 7.55812 7.70915 7.77972 7.99606 8.04611 8.22691 8.59290 8.82371 8.90028 10.12948 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.003135 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.408680 B = 8928.316506 C = 9698.108422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 H 0.151 0.849 4 C -0.043 4.043 5 C -0.191 4.191 6 C 0.511 3.489 7 O -0.502 6.502 8 O -0.512 6.512 9 N -1.118 6.118 10 S 2.578 3.422 11 O -0.962 6.962 12 O -0.971 6.971 13 C -0.526 4.526 14 C -0.224 4.224 15 C -0.076 4.076 16 C -0.222 4.222 17 C 0.111 3.889 18 C -0.447 4.447 19 H 0.080 0.920 20 C 0.069 3.931 21 N -0.794 5.794 22 Si 0.917 3.083 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.164 4.164 27 C -0.084 4.084 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.418 0.582 34 H 0.407 0.593 35 H 0.113 0.887 36 H 0.151 0.849 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.281 0.719 40 H 0.136 0.864 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.440 -9.521 16.673 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.010 3.990 3 H 0.167 0.833 4 C -0.063 4.063 5 C -0.212 4.212 6 C 0.358 3.642 7 O -0.395 6.395 8 O -0.324 6.324 9 N -0.872 5.872 10 S 2.678 3.322 11 O -0.952 6.952 12 O -0.962 6.962 13 C -0.657 4.657 14 C -0.229 4.229 15 C -0.096 4.096 16 C -0.242 4.242 17 C 0.108 3.892 18 C -0.477 4.477 19 H 0.098 0.902 20 C -0.148 4.148 21 N -0.420 5.420 22 Si 0.742 3.258 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.184 4.184 27 C -0.103 4.103 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.277 0.723 34 H 0.239 0.761 35 H 0.131 0.869 36 H 0.168 0.832 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.154 0.846 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.243 -9.449 15.832 19.168 hybrid contribution 0.977 0.574 -0.080 1.136 sum -4.266 -8.875 15.752 18.577 Atomic orbital electron populations 1.22317 0.94321 1.02524 1.03524 1.21274 0.95028 1.00626 0.82057 0.83273 1.24211 0.89910 0.98526 0.93645 1.21951 1.02249 0.94555 1.02412 1.21523 0.76331 0.84450 0.81879 1.90456 1.59595 1.67486 1.21955 1.84577 1.59284 1.41183 1.47377 1.55965 1.82713 1.18781 1.29787 1.06518 0.77524 0.75010 0.73101 1.93517 1.48026 1.70169 1.83499 1.93521 1.84682 1.58839 1.59141 1.29147 1.16538 1.12547 1.07457 1.18225 1.08546 0.97033 0.99120 1.20485 0.96351 0.97563 0.95181 1.21016 1.04943 0.97686 1.00597 1.17770 0.88636 0.90827 0.91972 1.19738 1.35533 0.90871 1.01575 0.90177 1.25997 0.92842 0.98877 0.97119 1.69763 1.34681 1.12010 1.25510 0.86158 0.79663 0.78736 0.81270 1.19197 1.20185 1.18564 1.21667 0.99125 1.01105 0.96481 1.20687 0.98499 0.93107 0.98047 0.89971 0.92426 0.91841 0.84195 0.83671 0.72283 0.76101 0.86888 0.83159 0.88840 0.88454 0.90751 0.84641 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.50 37.16 0.35 -1.38 16 2 C 0.12 1.28 2.51 -69.09 -0.17 1.11 16 3 H 0.15 1.91 3.75 -55.95 -0.21 1.70 16 4 C -0.04 -0.31 9.08 -36.10 -0.33 -0.64 16 5 C -0.19 -1.34 10.13 -37.84 -0.38 -1.73 16 6 C 0.51 4.83 8.21 34.26 0.28 5.11 16 7 O -0.50 -6.28 9.98 -19.29 -0.19 -6.47 16 8 O -0.51 -3.91 13.44 -40.75 -0.55 -4.46 16 9 N -1.12 -14.22 5.35 -5.89 -0.03 -14.25 16 10 S 2.58 47.05 5.36 -107.50 -0.58 46.48 16 11 O -0.96 -20.37 17.11 -57.54 -0.98 -21.35 16 12 O -0.97 -20.48 18.08 -57.54 -1.04 -21.52 16 13 C -0.53 -9.63 5.55 36.00 0.20 -9.43 16 14 C -0.22 -5.15 5.16 -104.33 -0.54 -5.69 16 15 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 16 C -0.22 -5.62 9.80 -38.87 -0.38 -6.00 16 17 C 0.11 3.02 5.61 -106.82 -0.60 2.42 16 18 C -0.45 -11.86 9.09 -37.74 -0.34 -12.21 16 19 H 0.08 2.03 7.86 -52.48 -0.41 1.61 16 20 C 0.07 1.72 5.34 -17.34 -0.09 1.62 16 21 N -0.79 -20.26 10.45 55.55 0.58 -19.68 16 22 Si 0.92 18.57 29.57 -169.99 -5.03 13.55 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 26 C -0.16 -4.38 8.71 -38.87 -0.34 -4.72 16 27 C -0.08 -2.06 9.67 -39.66 -0.38 -2.44 16 28 H 0.08 1.07 7.42 -51.93 -0.39 0.68 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.42 1.89 9.11 45.56 0.42 2.30 16 34 H 0.41 4.13 8.79 -34.47 -0.30 3.82 16 35 H 0.11 1.81 8.08 -51.93 -0.42 1.39 16 36 H 0.15 2.60 4.34 -51.92 -0.23 2.37 16 37 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 39 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 40 H 0.14 3.69 5.81 -52.49 -0.31 3.39 16 41 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -34.71 358.72 -9.46 -44.18 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -3.94 Total: 14.27 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: -3.11 Total: -36.15 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.55 Total: -33.93 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -2.76 Total: -53.80 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.55 kcal Atomic # 16 Polarization: 47.05 SS G_CDS: -0.58 Total: 46.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.71 -9.46 -44.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592215749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.033 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds