Wall clock time and date at job start Tue Mar 31 2020 22:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47095 * 2 1 4 4 C 1.50703 * 109.47191 * 240.00791 * 2 1 3 5 5 H 1.08002 * 119.99513 * 239.99390 * 4 2 1 6 6 C 1.37878 * 120.00313 * 59.99823 * 4 2 1 7 7 N 1.31514 * 119.99977 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99736 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47048 * 90.00031 * 8 6 4 10 10 H 1.48502 * 109.46786 * 209.99689 * 8 6 4 11 11 H 1.48497 * 109.47336 * 329.99895 * 8 6 4 12 12 S 1.81394 * 109.47524 * 120.00486 * 2 1 3 13 13 C 1.76206 * 102.99629 * 291.77345 * 12 2 1 14 14 C 1.38779 * 120.10630 * 354.78596 * 13 12 2 15 15 C 1.38200 * 119.99072 * 180.02562 * 14 13 12 16 16 C 1.38297 * 120.19615 * 359.97438 * 15 14 13 17 17 C 1.38252 * 120.21204 * 0.02562 * 16 15 14 18 18 C 1.38644 * 120.00868 * 0.27902 * 17 16 15 19 19 N 1.40142 * 120.10044 * 179.72408 * 18 17 16 20 20 C 1.34778 * 119.99886 * 19.60155 * 19 18 17 21 21 O 1.21295 * 120.00145 * 5.67811 * 20 19 18 22 22 C 1.50699 * 119.99861 * 185.68094 * 20 19 18 23 23 O 1.42897 * 109.47288 * 180.02562 * 22 20 19 24 24 C 1.42899 * 114.00185 * 179.97438 * 23 22 20 25 25 C 1.50704 * 109.47315 * 180.02562 * 24 23 22 26 26 O 1.20825 * 119.99443 * 359.97438 * 25 24 23 27 27 O 1.34229 * 120.00061 * 180.02562 * 25 24 23 28 28 H 1.08998 * 109.47041 * 63.59771 * 1 2 3 29 29 H 1.09002 * 109.46632 * 183.59145 * 1 2 3 30 30 H 1.08991 * 109.47586 * 303.59214 * 1 2 3 31 31 H 0.96996 * 119.99928 * 180.02562 * 7 6 4 32 32 H 1.08004 * 120.00460 * 359.97438 * 14 13 12 33 33 H 1.07998 * 119.90063 * 180.02562 * 15 14 13 34 34 H 1.08003 * 119.89623 * 180.02562 * 16 15 14 35 35 H 1.08002 * 119.99423 * 179.97438 * 17 16 15 36 36 H 0.96997 * 119.99621 * 199.60897 * 19 18 17 37 37 H 1.09008 * 109.47129 * 299.99615 * 22 20 19 38 38 H 1.08999 * 109.47596 * 59.99842 * 22 20 19 39 39 H 1.08995 * 109.47270 * 299.99933 * 24 23 22 40 40 H 1.08999 * 109.47196 * 59.99896 * 24 23 22 41 41 H 0.96705 * 116.99517 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1315 6 6 1.6993 -0.2391 -2.4828 7 7 0.9436 0.8305 -2.6034 8 14 2.3215 -1.1200 -4.0080 9 1 1.3428 -2.1614 -4.4121 10 1 2.4866 -0.1409 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 16 2.1347 -0.8552 1.4810 13 6 1.6664 0.2325 2.7857 14 6 1.0945 1.4631 2.4947 15 6 0.7286 2.3145 3.5199 16 6 0.9300 1.9442 4.8370 17 6 1.4991 0.7203 5.1363 18 6 1.8752 -0.1379 4.1145 19 7 2.4576 -1.3766 4.4157 20 6 2.3026 -1.9137 5.6420 21 8 1.5757 -1.3775 6.4516 22 6 3.0325 -3.1805 6.0075 23 8 2.7072 -3.5474 7.3496 24 6 3.3501 -4.7424 7.7976 25 6 2.9369 -5.0332 9.2175 26 8 2.1709 -4.2928 9.7873 27 8 3.4207 -6.1142 9.8492 28 1 -0.3633 0.4570 -0.9205 29 1 -0.3633 -1.0257 0.0644 30 1 -0.3634 0.5685 0.8559 31 1 0.7089 1.1617 -3.4844 32 1 0.9362 1.7556 1.4671 33 1 0.2832 3.2716 3.2917 34 1 0.6419 2.6133 5.6344 35 1 1.6552 0.4349 6.1662 36 1 2.9722 -1.8472 3.7415 37 1 2.7336 -3.9804 5.3299 38 1 4.1071 -3.0174 5.9253 39 1 3.0578 -5.5743 7.1570 40 1 4.4313 -4.6119 7.7530 41 1 3.1265 -6.2592 10.7590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592225613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:49 Heat of formation + Delta-G solvation = -133.237040 kcal Electronic energy + Delta-G solvation = -25830.389685 eV Core-core repulsion = 21802.329333 eV Total energy + Delta-G solvation = -4028.060352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.73127 -40.43357 -38.56740 -37.61239 -36.41730 -34.81596 -34.16940 -31.17730 -30.65982 -29.95956 -29.22847 -27.11733 -25.42848 -22.97471 -22.45668 -22.22657 -21.33752 -20.45990 -18.67070 -18.13635 -17.61837 -17.22346 -17.07949 -16.55665 -16.22835 -16.15054 -15.93305 -15.22107 -14.89744 -14.70938 -14.34122 -14.08747 -13.65584 -13.56570 -13.30883 -13.08365 -12.73769 -12.52213 -12.43399 -12.03788 -11.93470 -11.77697 -11.37509 -11.10610 -11.07485 -10.88316 -10.69508 -10.56964 -10.38770 -10.37630 -10.10987 -9.62774 -9.48017 -9.16047 -9.00794 -8.57340 -7.99164 -6.61107 -6.27971 -4.37904 1.47016 1.70597 1.77411 1.89631 2.38102 2.53630 2.87705 3.17473 3.24454 3.27626 3.52574 3.81125 4.11099 4.23865 4.36147 4.53977 4.55939 4.68413 4.76353 4.79575 5.04082 5.29016 5.35335 5.57874 5.77799 5.81893 6.04034 6.19504 6.27998 6.46554 6.50399 6.58511 6.68408 6.71079 6.75594 6.88006 7.24444 7.30785 7.40387 7.47125 7.54428 7.70676 7.95085 8.02159 8.60813 9.26650 10.77716 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.002409 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.980102 B =11618.842589 C =13247.837232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.511 4.511 5 H 0.067 0.933 6 C 0.071 3.929 7 N -0.885 5.885 8 Si 0.907 3.093 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 S -0.181 6.181 13 C -0.092 4.092 14 C -0.114 4.114 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.126 4.126 18 C 0.150 3.850 19 N -0.655 5.655 20 C 0.512 3.488 21 O -0.496 6.496 22 C 0.046 3.954 23 O -0.343 6.343 24 C 0.070 3.930 25 C 0.478 3.522 26 O -0.486 6.486 27 O -0.516 6.516 28 H 0.097 0.903 29 H 0.039 0.961 30 H 0.022 0.978 31 H 0.267 0.733 32 H 0.139 0.861 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.151 0.849 36 H 0.415 0.585 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 -8.672 17.168 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 H 0.070 0.930 4 C -0.551 4.551 5 H 0.085 0.915 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.734 3.266 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.196 1.196 12 S 0.066 5.934 13 C -0.208 4.208 14 C -0.138 4.138 15 C -0.141 4.141 16 C -0.142 4.142 17 C -0.148 4.148 18 C 0.050 3.950 19 N -0.301 5.301 20 C 0.298 3.702 21 O -0.370 6.370 22 C -0.033 4.033 23 O -0.261 6.261 24 C -0.008 4.008 25 C 0.318 3.682 26 O -0.371 6.371 27 O -0.330 6.330 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.169 0.831 36 H 0.252 0.748 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 5.950 -8.962 17.465 20.512 hybrid contribution -0.178 0.311 -0.890 0.959 sum 5.772 -8.651 16.575 19.568 Atomic orbital electron populations 1.22170 0.96241 1.00307 1.01903 1.21078 0.95656 0.97263 0.88346 0.93011 1.20607 1.32652 1.13270 0.88561 0.91504 1.24896 0.94661 0.94938 0.98893 1.69852 1.35729 1.22399 1.24235 0.86341 0.79366 0.79274 0.81620 1.20344 1.20925 1.19609 1.84892 1.73994 1.33022 1.01485 1.21683 1.04307 0.99528 0.95237 1.21321 0.99181 0.92696 1.00607 1.21053 1.00895 0.99529 0.92626 1.20974 1.00683 0.96272 0.96295 1.21472 1.00349 0.93179 0.99786 1.17211 1.00372 0.85605 0.91856 1.43326 1.52755 1.20042 1.13951 1.20143 0.82282 0.85830 0.81944 1.90682 1.35968 1.61046 1.49285 1.22259 1.00121 0.96166 0.84803 1.88064 1.69068 1.40980 1.27956 1.21647 0.98904 0.90082 0.90152 1.22808 0.78214 0.78205 0.89007 1.90815 1.32151 1.47207 1.66969 1.84440 1.69318 1.45430 1.33805 0.88487 0.94200 0.95867 0.92336 0.84291 0.86172 0.86142 0.83125 0.74784 0.88995 0.89045 0.88297 0.88347 0.72330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.58 37.16 0.32 -3.05 16 2 C 0.10 2.45 1.98 -27.88 -0.06 2.39 16 3 H 0.05 1.31 7.00 -51.92 -0.36 0.94 16 4 C -0.51 -13.15 8.58 -34.44 -0.30 -13.45 16 5 H 0.07 1.72 7.71 -52.49 -0.40 1.31 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -23.44 11.30 55.43 0.63 -22.81 16 8 Si 0.91 20.02 29.54 -169.99 -5.02 15.00 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 12 S -0.18 -3.62 19.88 -107.50 -2.14 -5.76 16 13 C -0.09 -1.72 6.05 -38.90 -0.24 -1.96 16 14 C -0.11 -2.08 8.01 -39.40 -0.32 -2.40 16 15 C -0.12 -1.91 10.04 -39.57 -0.40 -2.30 16 16 C -0.12 -1.83 10.04 -39.55 -0.40 -2.23 16 17 C -0.13 -2.10 8.78 -39.43 -0.35 -2.45 16 18 C 0.15 2.56 6.51 -83.43 -0.54 2.02 16 19 N -0.66 -9.25 5.24 -9.71 -0.05 -9.30 16 20 C 0.51 7.01 7.75 -10.99 -0.09 6.92 16 21 O -0.50 -8.79 13.41 -14.36 -0.19 -8.98 16 22 C 0.05 0.41 6.42 36.01 0.23 0.64 16 23 O -0.34 -3.85 9.41 -64.76 -0.61 -4.46 16 24 C 0.07 0.47 6.53 36.01 0.24 0.70 16 25 C 0.48 4.19 8.40 36.01 0.30 4.50 16 26 O -0.49 -6.68 17.26 -25.48 -0.44 -7.12 16 27 O -0.52 -2.79 13.42 -39.25 -0.53 -3.32 16 28 H 0.10 2.42 5.98 -51.93 -0.31 2.11 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.02 0.48 5.74 -51.93 -0.30 0.18 16 31 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.14 2.71 4.77 -52.48 -0.25 2.46 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 35 H 0.15 2.55 5.42 -52.49 -0.28 2.27 16 36 H 0.41 5.09 7.51 -40.82 -0.31 4.79 16 37 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.42 0.65 9.10 45.56 0.41 1.06 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -34.43 362.13 -8.47 -42.90 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -3.90 Total: 7.33 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.68 Total: -8.94 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.58 Total: -32.11 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -1.77 Total: -23.88 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -2.14 Total: -5.76 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.43 -8.47 -42.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592225613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.333 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds