Wall clock time and date at job start Tue Mar 31 2020 22:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47095 * 2 1 4 4 C 1.50703 * 109.47191 * 240.00791 * 2 1 3 5 5 H 1.08002 * 119.99513 * 239.99390 * 4 2 1 6 6 C 1.37878 * 120.00313 * 59.99823 * 4 2 1 7 7 N 1.31514 * 119.99977 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99736 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47048 * 90.00031 * 8 6 4 10 10 H 1.48502 * 109.46786 * 209.99689 * 8 6 4 11 11 H 1.48497 * 109.47336 * 329.99895 * 8 6 4 12 12 S 1.81394 * 109.47524 * 120.00486 * 2 1 3 13 13 C 1.76206 * 102.99629 * 291.77345 * 12 2 1 14 14 C 1.38779 * 120.10630 * 354.78596 * 13 12 2 15 15 C 1.38200 * 119.99072 * 180.02562 * 14 13 12 16 16 C 1.38297 * 120.19615 * 359.97438 * 15 14 13 17 17 C 1.38252 * 120.21204 * 0.02562 * 16 15 14 18 18 C 1.38644 * 120.00868 * 0.27902 * 17 16 15 19 19 N 1.40142 * 120.10044 * 179.72408 * 18 17 16 20 20 C 1.34778 * 119.99886 * 19.60155 * 19 18 17 21 21 O 1.21295 * 120.00145 * 5.67811 * 20 19 18 22 22 C 1.50699 * 119.99861 * 185.68094 * 20 19 18 23 23 O 1.42897 * 109.47288 * 180.02562 * 22 20 19 24 24 C 1.42899 * 114.00185 * 179.97438 * 23 22 20 25 25 C 1.50704 * 109.47315 * 180.02562 * 24 23 22 26 26 O 1.20825 * 119.99443 * 359.97438 * 25 24 23 27 27 O 1.34229 * 120.00061 * 180.02562 * 25 24 23 28 28 H 1.08998 * 109.47041 * 63.59771 * 1 2 3 29 29 H 1.09002 * 109.46632 * 183.59145 * 1 2 3 30 30 H 1.08991 * 109.47586 * 303.59214 * 1 2 3 31 31 H 0.96996 * 119.99928 * 180.02562 * 7 6 4 32 32 H 1.08004 * 120.00460 * 359.97438 * 14 13 12 33 33 H 1.07998 * 119.90063 * 180.02562 * 15 14 13 34 34 H 1.08003 * 119.89623 * 180.02562 * 16 15 14 35 35 H 1.08002 * 119.99423 * 179.97438 * 17 16 15 36 36 H 0.96997 * 119.99621 * 199.60897 * 19 18 17 37 37 H 1.09008 * 109.47129 * 299.99615 * 22 20 19 38 38 H 1.08999 * 109.47596 * 59.99842 * 22 20 19 39 39 H 1.08995 * 109.47270 * 299.99933 * 24 23 22 40 40 H 1.08999 * 109.47196 * 59.99896 * 24 23 22 41 41 H 0.96705 * 116.99517 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1315 6 6 1.6993 -0.2391 -2.4828 7 7 0.9436 0.8305 -2.6034 8 14 2.3215 -1.1200 -4.0080 9 1 1.3428 -2.1614 -4.4121 10 1 2.4866 -0.1409 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 16 2.1347 -0.8552 1.4810 13 6 1.6664 0.2325 2.7857 14 6 1.0945 1.4631 2.4947 15 6 0.7286 2.3145 3.5199 16 6 0.9300 1.9442 4.8370 17 6 1.4991 0.7203 5.1363 18 6 1.8752 -0.1379 4.1145 19 7 2.4576 -1.3766 4.4157 20 6 2.3026 -1.9137 5.6420 21 8 1.5757 -1.3775 6.4516 22 6 3.0325 -3.1805 6.0075 23 8 2.7072 -3.5474 7.3496 24 6 3.3501 -4.7424 7.7976 25 6 2.9369 -5.0332 9.2175 26 8 2.1709 -4.2928 9.7873 27 8 3.4207 -6.1142 9.8492 28 1 -0.3633 0.4570 -0.9205 29 1 -0.3633 -1.0257 0.0644 30 1 -0.3634 0.5685 0.8559 31 1 0.7089 1.1617 -3.4844 32 1 0.9362 1.7556 1.4671 33 1 0.2832 3.2716 3.2917 34 1 0.6419 2.6133 5.6344 35 1 1.6552 0.4349 6.1662 36 1 2.9722 -1.8472 3.7415 37 1 2.7336 -3.9804 5.3299 38 1 4.1071 -3.0174 5.9253 39 1 3.0578 -5.5743 7.1570 40 1 4.4313 -4.6119 7.7530 41 1 3.1265 -6.2592 10.7590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592225613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:49 Heat of formation + Delta-G solvation = -156.080874 kcal Electronic energy + Delta-G solvation = -25831.380268 eV Core-core repulsion = 21802.329333 eV Total energy + Delta-G solvation = -4029.050935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.70671 -41.23123 -39.61686 -38.49138 -37.05962 -36.29146 -35.79430 -32.84014 -31.61399 -31.53290 -30.09475 -27.91969 -27.37602 -24.26268 -23.80246 -23.07947 -22.78220 -21.59261 -19.60020 -19.14515 -18.57869 -18.28283 -17.93902 -17.78419 -17.39426 -17.09248 -16.91944 -16.75766 -16.06193 -15.83769 -15.57982 -15.39180 -15.02823 -14.83869 -14.47628 -14.24518 -14.11738 -13.76399 -13.30812 -13.28157 -13.18006 -12.89468 -12.85823 -12.71023 -12.58881 -12.47262 -12.23787 -11.83701 -11.61734 -11.58258 -11.36124 -10.93470 -10.82104 -10.75434 -10.59892 -10.43983 -9.28888 -8.23146 -8.12330 -6.39783 0.19437 0.35532 0.82282 1.15458 1.29811 1.43591 1.44951 1.47517 1.55183 1.82960 2.07394 2.39476 2.79932 3.06982 3.12058 3.51839 3.91566 4.08483 4.17237 4.17591 4.20873 4.30279 4.32462 4.38669 4.49544 4.52731 4.60364 4.82089 4.87709 4.90314 5.14428 5.29424 5.33499 5.43756 5.55949 5.57454 5.59123 5.75972 5.79252 6.02560 6.03289 6.33144 6.63048 6.96142 6.97434 7.27960 8.82394 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.002409 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.980102 B =11618.842589 C =13247.837232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.097 3.903 3 H 0.026 0.974 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.025 3.975 7 N -0.910 5.910 8 Si 0.968 3.032 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.266 1.266 12 S -0.162 6.162 13 C -0.116 4.116 14 C -0.129 4.129 15 C -0.121 4.121 16 C -0.109 4.109 17 C -0.138 4.138 18 C 0.150 3.850 19 N -0.652 5.652 20 C 0.507 3.493 21 O -0.542 6.542 22 C 0.052 3.948 23 O -0.387 6.387 24 C 0.065 3.935 25 C 0.481 3.519 26 O -0.549 6.549 27 O -0.504 6.504 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.268 0.732 32 H 0.121 0.879 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.423 0.577 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.456 -10.161 17.768 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 H 0.044 0.956 4 C -0.569 4.569 5 H 0.081 0.919 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.793 3.207 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.190 1.190 12 S 0.084 5.916 13 C -0.231 4.231 14 C -0.153 4.153 15 C -0.141 4.141 16 C -0.130 4.130 17 C -0.159 4.159 18 C 0.048 3.952 19 N -0.298 5.298 20 C 0.296 3.704 21 O -0.419 6.419 22 C -0.026 4.026 23 O -0.306 6.306 24 C -0.011 4.011 25 C 0.324 3.676 26 O -0.439 6.439 27 O -0.318 6.318 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.165 0.835 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.262 0.738 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 7.321 -10.499 18.081 22.153 hybrid contribution -0.572 0.762 -0.899 1.310 sum 6.749 -9.737 17.182 20.870 Atomic orbital electron populations 1.21984 0.96089 0.99833 1.01278 1.20832 0.95817 0.96252 0.90143 0.95562 1.20882 1.32824 1.13359 0.89797 0.91861 1.25689 0.94762 0.95566 1.01641 1.69966 1.36483 1.23467 1.24832 0.85393 0.78981 0.78225 0.78142 1.19874 1.20622 1.19035 1.84493 1.74358 1.32666 1.00055 1.21687 1.06305 0.99858 0.95296 1.21315 1.00099 0.93396 1.00473 1.21315 1.00406 1.00141 0.92227 1.21360 0.98714 0.95995 0.96902 1.21642 1.00874 0.93825 0.99599 1.17355 0.99796 0.86814 0.91188 1.43386 1.52453 1.19201 1.14717 1.21159 0.81537 0.86899 0.80799 1.90656 1.38102 1.62736 1.50383 1.22387 1.01407 0.94148 0.84668 1.87993 1.70524 1.43099 1.29024 1.22020 1.00580 0.89587 0.88948 1.23390 0.76785 0.77643 0.89781 1.90797 1.35158 1.49412 1.68553 1.84417 1.68511 1.43853 1.35043 0.90753 0.94620 0.94588 0.92268 0.86151 0.83539 0.82935 0.83307 0.73795 0.85647 0.85057 0.85020 0.84730 0.70486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.23 8.58 71.98 0.62 -5.62 16 2 C 0.10 4.72 1.98 29.85 0.06 4.77 16 3 H 0.03 1.39 7.00 -2.39 -0.02 1.37 16 4 C -0.53 -27.61 8.58 25.60 0.22 -27.39 16 5 H 0.06 3.26 7.71 -2.91 -0.02 3.24 16 6 C 0.03 1.31 5.30 84.65 0.45 1.76 16 7 N -0.91 -49.12 11.30 21.45 0.24 -48.88 16 8 Si 0.97 41.00 29.54 68.60 2.03 43.02 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 12 S -0.16 -6.48 19.88 -56.49 -1.12 -7.61 16 13 C -0.12 -4.34 6.05 22.71 0.14 -4.20 16 14 C -0.13 -4.73 8.01 22.39 0.18 -4.55 16 15 C -0.12 -3.66 10.04 22.27 0.22 -3.44 16 16 C -0.11 -3.11 10.04 22.29 0.22 -2.89 16 17 C -0.14 -4.47 8.78 22.37 0.20 -4.27 16 18 C 0.15 5.03 6.51 38.22 0.25 5.27 16 19 N -0.65 -17.61 5.24 -303.00 -1.59 -19.19 16 20 C 0.51 13.20 7.75 87.66 0.68 13.88 16 21 O -0.54 -19.12 13.41 15.96 0.21 -18.90 16 22 C 0.05 0.76 6.42 71.24 0.46 1.22 16 23 O -0.39 -7.92 9.41 -120.75 -1.14 -9.06 16 24 C 0.06 0.66 6.53 71.24 0.47 1.13 16 25 C 0.48 7.76 8.40 71.24 0.60 8.36 16 26 O -0.55 -15.26 17.26 28.40 0.49 -14.77 16 27 O -0.50 -4.37 13.42 -51.40 -0.69 -5.06 16 28 H 0.07 3.83 5.98 -2.39 -0.01 3.82 16 29 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.55 5.74 -2.39 -0.01 1.53 16 31 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 32 H 0.12 4.86 4.77 -2.91 -0.01 4.84 16 33 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.15 4.98 5.42 -2.91 -0.02 4.96 16 36 H 0.42 9.70 7.51 -92.71 -0.70 9.00 16 37 H 0.13 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.43 0.66 9.10 -74.05 -0.67 -0.01 16 Total: -1.00 -78.27 362.13 2.93 -75.34 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -0.26 Total: 21.07 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 4.75 Total: -15.96 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -1.34 Total: -68.07 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -1.12 Total: -47.79 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 16 Polarization: -6.48 SS G_CDS: -1.12 Total: -7.61 kcal Total: -78.27 2.93 -75.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592225613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.741 kcal (2) G-P(sol) polarization free energy of solvation -78.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds