Wall clock time and date at job start Tue Mar 31 2020 22:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 117.00623 * 2 1 4 4 C 1.38727 * 120.05717 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94055 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05729 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.94373 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.47128 * 340.00385 * 7 6 5 9 9 C 1.52998 * 109.47140 * 100.00595 * 7 6 5 10 10 C 1.50706 * 109.47086 * 293.40912 * 9 7 6 11 11 O 1.20830 * 119.99668 * 353.26557 * 10 9 7 12 12 O 1.34226 * 120.00108 * 173.27379 * 10 9 7 13 13 N 1.46502 * 109.47131 * 220.00549 * 7 6 5 14 14 C 1.34780 * 119.99600 * 154.10426 * 13 7 6 15 15 O 1.21277 * 120.00290 * 355.00032 * 14 13 7 16 16 C 1.50703 * 119.99745 * 175.00427 * 14 13 7 17 17 S 1.80991 * 109.47370 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00383 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00083 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00407 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99569 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00018 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47323 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.46936 * 119.99910 * 22 20 18 25 25 H 1.48499 * 109.46832 * 239.99623 * 22 20 18 26 26 C 1.38266 * 120.11336 * 0.02562 * 6 5 4 27 27 C 1.38142 * 120.05407 * 359.97438 * 26 6 5 28 28 H 1.08996 * 109.47569 * 300.01198 * 1 2 3 29 29 H 1.09003 * 109.46511 * 60.00439 * 1 2 3 30 30 H 1.08993 * 109.47772 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.03472 * 359.95036 * 4 3 2 32 32 H 1.08002 * 119.96923 * 179.72591 * 5 4 3 33 33 H 1.08997 * 109.47130 * 53.40585 * 9 7 6 34 34 H 1.08998 * 109.47632 * 173.40781 * 9 7 6 35 35 H 0.96704 * 117.00008 * 179.97438 * 12 10 9 36 36 H 0.96996 * 120.00155 * 334.09621 * 13 7 6 37 37 H 1.09003 * 109.46969 * 299.99891 * 16 14 13 38 38 H 1.09004 * 109.46959 * 59.99405 * 16 14 13 39 39 H 0.97005 * 119.99437 * 180.02562 * 21 20 18 40 40 H 1.07997 * 119.97141 * 180.02562 * 26 6 5 41 41 H 1.07999 * 120.03193 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9863 5.0184 -0.0028 8 1 5.0115 4.9040 0.3492 9 6 3.9951 5.5850 -1.4239 10 6 4.8716 4.7282 -2.3009 11 8 5.5269 3.8375 -1.8139 12 8 4.9243 4.9546 -3.6228 13 7 3.2649 5.9348 0.8838 14 6 3.9135 6.9680 1.4569 15 8 5.1116 7.0873 1.3121 16 6 3.1497 7.9751 2.2776 17 16 4.2914 9.2301 2.9081 18 6 3.1645 10.2472 3.8027 19 1 2.1146 9.9953 3.8302 20 6 3.6260 11.3720 4.4721 21 7 4.9057 11.6787 4.4391 22 14 2.4314 12.4499 5.4212 23 1 1.0603 11.8921 5.3031 24 1 2.8290 12.4890 6.8515 25 1 2.4554 13.8257 4.8630 26 6 1.9212 3.6048 -0.0021 27 6 1.2916 2.3752 -0.0016 28 1 -0.3634 0.5140 0.8898 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 4.0209 0.3798 0.0018 32 1 5.1346 2.5748 0.0049 33 1 2.9795 5.5899 -1.8195 34 1 4.3832 6.6034 -1.4067 35 1 5.5009 4.3794 -4.1442 36 1 2.3206 5.7981 1.0584 37 1 2.3926 8.4520 1.6551 38 1 2.6667 7.4705 3.1145 39 1 5.2282 12.4646 4.9073 40 1 1.3344 4.5114 -0.0038 41 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599510149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:17 Heat of formation + Delta-G solvation = -139.392892 kcal Electronic energy + Delta-G solvation = -26210.320297 eV Core-core repulsion = 22181.993007 eV Total energy + Delta-G solvation = -4028.327290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.94186 -40.15323 -39.32955 -37.89183 -36.29739 -35.08547 -32.44702 -31.91368 -31.32630 -29.82776 -28.97088 -27.61875 -25.53757 -24.65154 -22.99341 -22.09991 -20.84536 -20.11888 -18.54275 -18.33117 -17.93449 -17.07818 -16.84141 -16.20211 -16.07451 -15.99199 -15.70712 -15.12041 -14.96323 -14.81959 -14.31125 -14.09962 -13.89875 -13.80847 -13.38916 -13.18355 -13.09172 -12.86920 -12.58968 -12.50573 -12.24283 -11.87916 -11.68205 -11.31014 -11.28863 -11.08493 -11.03751 -11.02590 -10.78108 -10.68445 -9.82968 -9.52185 -9.21689 -9.11945 -9.06448 -8.38922 -8.25639 -6.52172 -6.23548 -3.94187 1.10057 1.13398 2.07342 2.64141 2.95373 2.99085 3.12937 3.20484 3.28018 3.32786 3.49483 3.74297 4.18418 4.36824 4.46650 4.61735 4.65123 4.74298 4.78039 5.00250 5.08621 5.08827 5.11930 5.12658 5.21890 5.23623 5.45172 5.47856 5.56307 5.70217 5.84237 5.88355 5.98735 6.06273 6.10201 6.29253 6.35103 6.54018 6.56842 7.08739 7.57756 7.59753 7.72679 8.33626 8.50756 9.22072 10.83896 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.002512 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.698278 B =11142.592887 C =12603.321340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.128 3.872 4 C -0.155 4.155 5 C -0.040 4.040 6 C -0.135 4.135 7 C 0.204 3.796 8 H 0.111 0.889 9 C -0.125 4.125 10 C 0.487 3.513 11 O -0.509 6.509 12 O -0.518 6.518 13 N -0.732 5.732 14 C 0.534 3.466 15 O -0.511 6.511 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.073 4.073 27 C -0.211 4.211 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.409 0.591 36 H 0.399 0.601 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.125 0.875 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 -21.166 -14.163 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.083 3.917 4 C -0.173 4.173 5 C -0.058 4.058 6 C -0.136 4.136 7 C 0.098 3.902 8 H 0.129 0.871 9 C -0.164 4.164 10 C 0.329 3.671 11 O -0.397 6.397 12 O -0.330 6.330 13 N -0.387 5.387 14 C 0.320 3.680 15 O -0.385 6.385 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.091 4.091 27 C -0.229 4.229 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.149 0.851 32 H 0.160 0.840 33 H 0.124 0.876 34 H 0.136 0.864 35 H 0.268 0.732 36 H 0.235 0.765 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.143 0.857 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.144 -20.999 -13.970 26.213 hybrid contribution -2.573 0.282 0.455 2.628 sum -9.718 -20.717 -13.515 26.576 Atomic orbital electron populations 1.23055 0.78389 1.03919 1.01434 1.86071 1.21404 1.27090 1.88682 1.19104 0.92427 0.84100 0.96071 1.20466 0.91231 0.98790 1.06841 1.21033 1.00814 0.90228 0.93767 1.19752 0.93498 0.94565 1.05739 1.19336 0.98328 0.85036 0.87486 0.87138 1.21827 1.00490 1.00579 0.93532 1.23209 0.80405 0.82536 0.80990 1.90690 1.42458 1.31772 1.74736 1.84538 1.66135 1.61215 1.21126 1.46124 1.13736 1.29462 1.49410 1.20402 0.87974 0.80906 0.78705 1.90720 1.14371 1.73869 1.59521 1.23544 1.04511 1.00674 1.01732 1.85420 1.10206 1.23447 1.64173 1.22899 0.95803 1.12745 1.36876 0.90863 1.24997 0.95717 0.96856 0.96053 1.70026 1.13099 1.26160 1.40944 0.86113 0.80345 0.79726 0.79285 1.19621 1.20567 1.20575 1.20727 0.93773 0.97196 0.97439 1.21143 0.99966 0.92160 1.09665 0.92534 0.92654 0.88287 0.85131 0.84015 0.87577 0.86354 0.73222 0.76514 0.89019 0.89117 0.92219 0.85689 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.08 10.50 -19.43 -0.20 -3.29 16 3 C 0.13 1.32 6.69 -39.22 -0.26 1.06 16 4 C -0.15 -1.66 9.99 -39.43 -0.39 -2.06 16 5 C -0.04 -0.45 8.14 -39.60 -0.32 -0.78 16 6 C -0.13 -1.46 4.51 -104.60 -0.47 -1.93 16 7 C 0.20 2.44 2.01 -69.08 -0.14 2.30 16 8 H 0.11 1.62 7.00 -51.93 -0.36 1.26 16 9 C -0.13 -1.31 5.56 -27.88 -0.15 -1.47 16 10 C 0.49 5.25 8.01 36.01 0.29 5.54 16 11 O -0.51 -6.49 13.62 -18.75 -0.26 -6.74 16 12 O -0.52 -4.41 13.42 -39.25 -0.53 -4.94 16 13 N -0.73 -9.19 5.02 -54.93 -0.28 -9.47 16 14 C 0.53 9.38 7.82 -10.98 -0.09 9.30 16 15 O -0.51 -11.04 15.48 5.56 0.09 -10.96 16 16 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 17 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 18 C -0.53 -14.97 9.50 30.94 0.29 -14.67 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 22 Si 0.92 21.16 29.55 -169.99 -5.02 16.13 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 C -0.07 -0.67 9.04 -39.61 -0.36 -1.03 16 27 C -0.21 -1.90 9.04 -39.43 -0.36 -2.25 16 28 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.14 1.66 6.87 -52.49 -0.36 1.30 16 33 H 0.11 0.88 8.12 -51.93 -0.42 0.45 16 34 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.41 1.77 9.10 45.56 0.41 2.19 16 36 H 0.40 3.89 6.87 -40.82 -0.28 3.61 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.13 0.87 6.90 -52.49 -0.36 0.51 16 41 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -36.37 367.70 -7.14 -43.51 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.16 Total: 4.75 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -0.84 Total: -5.60 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.46 Total: -34.62 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.90 Total: -25.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.37 -7.14 -43.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599510149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.885 kcal (2) G-P(sol) polarization free energy of solvation -36.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds