Wall clock time and date at job start Tue Mar 31 2020 22:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 117.00623 * 2 1 4 4 C 1.38727 * 120.05717 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94055 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05729 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.94373 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.47128 * 340.00385 * 7 6 5 9 9 C 1.52998 * 109.47140 * 100.00595 * 7 6 5 10 10 C 1.50706 * 109.47086 * 293.40912 * 9 7 6 11 11 O 1.20830 * 119.99668 * 353.26557 * 10 9 7 12 12 O 1.34226 * 120.00108 * 173.27379 * 10 9 7 13 13 N 1.46502 * 109.47131 * 220.00549 * 7 6 5 14 14 C 1.34780 * 119.99600 * 154.10426 * 13 7 6 15 15 O 1.21277 * 120.00290 * 355.00032 * 14 13 7 16 16 C 1.50703 * 119.99745 * 175.00427 * 14 13 7 17 17 S 1.80991 * 109.47370 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00383 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00083 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00407 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99569 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00018 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47323 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.46936 * 119.99910 * 22 20 18 25 25 H 1.48499 * 109.46832 * 239.99623 * 22 20 18 26 26 C 1.38266 * 120.11336 * 0.02562 * 6 5 4 27 27 C 1.38142 * 120.05407 * 359.97438 * 26 6 5 28 28 H 1.08996 * 109.47569 * 300.01198 * 1 2 3 29 29 H 1.09003 * 109.46511 * 60.00439 * 1 2 3 30 30 H 1.08993 * 109.47772 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.03472 * 359.95036 * 4 3 2 32 32 H 1.08002 * 119.96923 * 179.72591 * 5 4 3 33 33 H 1.08997 * 109.47130 * 53.40585 * 9 7 6 34 34 H 1.08998 * 109.47632 * 173.40781 * 9 7 6 35 35 H 0.96704 * 117.00008 * 179.97438 * 12 10 9 36 36 H 0.96996 * 120.00155 * 334.09621 * 13 7 6 37 37 H 1.09003 * 109.46969 * 299.99891 * 16 14 13 38 38 H 1.09004 * 109.46959 * 59.99405 * 16 14 13 39 39 H 0.97005 * 119.99437 * 180.02562 * 21 20 18 40 40 H 1.07997 * 119.97141 * 180.02562 * 26 6 5 41 41 H 1.07999 * 120.03193 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9863 5.0184 -0.0028 8 1 5.0115 4.9040 0.3492 9 6 3.9951 5.5850 -1.4239 10 6 4.8716 4.7282 -2.3009 11 8 5.5269 3.8375 -1.8139 12 8 4.9243 4.9546 -3.6228 13 7 3.2649 5.9348 0.8838 14 6 3.9135 6.9680 1.4569 15 8 5.1116 7.0873 1.3121 16 6 3.1497 7.9751 2.2776 17 16 4.2914 9.2301 2.9081 18 6 3.1645 10.2472 3.8027 19 1 2.1146 9.9953 3.8302 20 6 3.6260 11.3720 4.4721 21 7 4.9057 11.6787 4.4391 22 14 2.4314 12.4499 5.4212 23 1 1.0603 11.8921 5.3031 24 1 2.8290 12.4890 6.8515 25 1 2.4554 13.8257 4.8630 26 6 1.9212 3.6048 -0.0021 27 6 1.2916 2.3752 -0.0016 28 1 -0.3634 0.5140 0.8898 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 4.0209 0.3798 0.0018 32 1 5.1346 2.5748 0.0049 33 1 2.9795 5.5899 -1.8195 34 1 4.3832 6.6034 -1.4067 35 1 5.5009 4.3794 -4.1442 36 1 2.3206 5.7981 1.0584 37 1 2.3926 8.4520 1.6551 38 1 2.6667 7.4705 3.1145 39 1 5.2282 12.4646 4.9073 40 1 1.3344 4.5114 -0.0038 41 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599510149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:16 Heat of formation + Delta-G solvation = -165.913560 kcal Electronic energy + Delta-G solvation = -26211.470319 eV Core-core repulsion = 22181.993007 eV Total energy + Delta-G solvation = -4029.477312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82745 -40.89777 -40.53306 -38.76108 -37.08917 -36.17332 -34.56061 -33.07549 -32.07021 -30.58709 -30.36510 -28.17431 -27.64590 -25.58268 -23.79589 -22.88756 -21.92169 -21.20348 -19.89548 -19.18633 -19.14767 -18.10198 -17.98192 -17.12465 -16.91529 -16.85854 -16.78474 -16.62918 -16.34209 -16.00098 -15.67011 -15.20514 -14.86801 -14.68488 -14.48548 -14.33667 -14.18138 -13.92351 -13.68531 -13.48890 -13.13130 -13.07971 -12.89554 -12.80901 -12.58429 -12.49661 -12.15829 -11.93393 -11.74541 -11.68976 -11.56878 -11.13840 -10.99789 -10.30246 -10.23447 -9.96191 -9.14761 -8.63526 -8.32607 -6.09834 0.31814 0.37469 1.23207 1.27737 1.43130 1.47351 1.55792 1.59689 1.95936 2.29168 2.36531 2.46913 2.74845 3.01984 3.34568 3.49871 3.72497 3.79358 3.95263 4.01093 4.16374 4.30424 4.34820 4.39197 4.41837 4.42586 4.51644 4.55767 4.65005 4.66330 4.76093 4.81921 5.05525 5.21214 5.27871 5.35152 5.45042 5.62281 5.64559 5.79195 6.22549 6.42494 6.46369 7.00720 7.09293 7.20665 8.76690 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.002512 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.698278 B =11142.592887 C =12603.321340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.122 3.878 4 C -0.170 4.170 5 C -0.052 4.052 6 C -0.143 4.143 7 C 0.209 3.791 8 H 0.077 0.923 9 C -0.123 4.123 10 C 0.488 3.512 11 O -0.534 6.534 12 O -0.513 6.513 13 N -0.704 5.704 14 C 0.538 3.462 15 O -0.559 6.559 16 C -0.129 4.129 17 S -0.152 6.152 18 C -0.542 4.542 19 H 0.085 0.915 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.255 1.255 24 H -0.276 1.276 25 H -0.275 1.275 26 C -0.068 4.068 27 C -0.207 4.207 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.137 0.863 34 H 0.107 0.893 35 H 0.427 0.573 36 H 0.418 0.582 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.270 0.730 40 H 0.154 0.846 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 -21.695 -14.715 29.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.077 3.923 4 C -0.188 4.188 5 C -0.070 4.070 6 C -0.144 4.144 7 C 0.104 3.896 8 H 0.095 0.905 9 C -0.161 4.161 10 C 0.331 3.669 11 O -0.424 6.424 12 O -0.327 6.327 13 N -0.359 5.359 14 C 0.325 3.675 15 O -0.436 6.436 16 C -0.280 4.280 17 S 0.075 5.925 18 C -0.690 4.690 19 H 0.103 0.897 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.820 3.180 23 H -0.179 1.179 24 H -0.202 1.202 25 H -0.200 1.200 26 C -0.086 4.086 27 C -0.225 4.225 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.155 0.845 34 H 0.125 0.875 35 H 0.289 0.711 36 H 0.257 0.743 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.079 0.921 40 H 0.172 0.828 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.013 -21.573 -14.563 28.262 hybrid contribution -1.425 0.256 0.514 1.536 sum -12.438 -21.317 -14.049 28.398 Atomic orbital electron populations 1.23360 0.76303 1.05575 1.02460 1.86054 1.23615 1.26925 1.88507 1.19251 0.92351 0.85020 0.95712 1.20542 0.92108 0.98607 1.07578 1.20947 1.00291 0.90992 0.94785 1.19623 0.94367 0.93262 1.07138 1.19219 0.96719 0.85682 0.88022 0.90482 1.21765 1.02180 0.99570 0.92621 1.23220 0.79963 0.82044 0.81645 1.90699 1.43440 1.32943 1.75338 1.84487 1.66479 1.61578 1.20157 1.45779 1.14397 1.27627 1.48121 1.20130 0.87193 0.81567 0.78631 1.90718 1.16368 1.75160 1.61385 1.23379 1.02946 0.98917 1.02803 1.85628 1.14694 1.26916 1.65271 1.23235 0.96141 1.12934 1.36708 0.89739 1.26124 0.97603 0.98478 0.97085 1.70194 1.15476 1.26963 1.42234 0.84912 0.78257 0.77434 0.77384 1.17850 1.20196 1.20045 1.20998 0.92903 0.98532 0.96173 1.21447 1.01322 0.91384 1.08349 0.91589 0.91392 0.86551 0.85025 0.85602 0.84527 0.87451 0.71083 0.74301 0.86431 0.87152 0.92090 0.82839 0.82612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.92 10.50 -92.45 -0.97 -6.89 16 3 C 0.12 2.32 6.69 22.51 0.15 2.47 16 4 C -0.17 -3.63 9.99 22.36 0.22 -3.41 16 5 C -0.05 -1.19 8.14 22.25 0.18 -1.00 16 6 C -0.14 -2.92 4.51 -19.85 -0.09 -3.01 16 7 C 0.21 4.89 2.01 44.24 0.09 4.98 16 8 H 0.08 2.38 7.00 -2.38 -0.02 2.36 16 9 C -0.12 -2.43 5.56 29.85 0.17 -2.27 16 10 C 0.49 10.30 8.01 71.24 0.57 10.87 16 11 O -0.53 -13.98 13.62 21.95 0.30 -13.68 16 12 O -0.51 -8.05 13.42 -51.38 -0.69 -8.74 16 13 N -0.70 -16.43 5.02 -446.09 -2.24 -18.66 16 14 C 0.54 18.62 7.82 87.66 0.69 19.30 16 15 O -0.56 -24.87 15.48 -3.02 -0.05 -24.92 16 16 C -0.13 -4.80 6.16 71.24 0.44 -4.36 16 17 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 18 C -0.54 -30.22 9.50 67.95 0.65 -29.58 16 19 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 20 C 0.01 0.66 5.49 84.86 0.47 1.12 16 21 N -0.91 -55.55 13.22 21.65 0.29 -55.27 16 22 Si 1.00 42.95 29.55 68.60 2.03 44.97 16 23 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 24 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 C -0.07 -1.03 9.04 22.25 0.20 -0.83 16 27 C -0.21 -3.06 9.04 22.37 0.20 -2.85 16 28 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 29 H 0.07 0.41 7.66 -2.39 -0.02 0.40 16 30 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.13 3.21 6.87 -2.91 -0.02 3.19 16 33 H 0.14 1.83 8.12 -2.39 -0.02 1.81 16 34 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.43 3.15 9.10 -74.05 -0.67 2.47 16 36 H 0.42 6.66 6.87 -92.71 -0.64 6.02 16 37 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 38 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 39 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 40 H 0.15 1.38 6.90 -2.91 -0.02 1.36 16 41 H 0.16 1.40 6.30 -2.91 -0.02 1.38 16 Total: -1.00 -82.18 367.70 2.33 -79.84 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -0.22 Total: 20.03 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 5.04 Total: -7.30 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -1.95 Total: -73.93 kcal Atomic # 8 Polarization: -52.81 SS G_CDS: -1.41 Total: -54.22 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -82.18 2.33 -79.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599510149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.070 kcal (2) G-P(sol) polarization free energy of solvation -82.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds