Wall clock time and date at job start Tue Mar 31 2020 22:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42101 * 109.47000 * 2 1 4 4 C 1.76195 * 102.99960 * 109.06000 * 2 1 3 5 5 C 1.38241 * 119.99862 * 89.99907 * 4 2 1 6 6 C 1.38231 * 119.99969 * 179.97438 * 5 4 2 7 7 C 1.38236 * 119.99975 * 0.25578 * 6 5 4 8 8 C 1.50697 * 120.00143 * 179.72655 * 7 6 5 9 9 C 1.50699 * 109.47313 * 90.00215 * 8 7 6 10 10 O 1.21292 * 119.99938 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00302 * 180.02562 * 9 8 7 12 12 C 1.37097 * 119.99449 * 359.97438 * 11 9 8 13 13 H 1.07999 * 120.00195 * 322.25079 * 12 11 9 14 14 C 1.38952 * 119.99549 * 142.25560 * 12 11 9 15 15 N 1.31420 * 119.99903 * 157.63614 * 14 12 11 16 16 Si 1.86799 * 120.00365 * 337.63992 * 14 12 11 17 17 H 1.48494 * 109.47435 * 95.69966 * 16 14 12 18 18 H 1.48501 * 109.47152 * 215.70527 * 16 14 12 19 19 H 1.48507 * 109.46754 * 335.70099 * 16 14 12 20 20 C 1.46494 * 120.00130 * 179.97438 * 11 9 8 21 21 C 1.52998 * 109.47257 * 83.61463 * 20 11 9 22 22 C 1.50699 * 109.47359 * 179.97438 * 21 20 11 23 23 O 1.20835 * 119.99818 * 0.02562 * 22 21 20 24 24 O 1.34222 * 120.00337 * 180.02562 * 22 21 20 25 25 C 1.38241 * 119.99860 * 359.48864 * 7 6 5 26 26 C 1.38231 * 120.00193 * 269.97433 * 4 2 1 27 27 H 1.09002 * 109.46968 * 310.93962 * 1 2 3 28 28 H 1.09002 * 109.46912 * 70.94026 * 1 2 3 29 29 H 1.08999 * 109.47042 * 190.93786 * 1 2 3 30 30 H 1.07997 * 119.99985 * 359.97438 * 5 4 2 31 31 H 1.07998 * 120.00307 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47286 * 210.00048 * 8 7 6 33 33 H 1.08998 * 109.47119 * 329.99739 * 8 7 6 34 34 H 0.96993 * 119.99980 * 179.97438 * 15 14 12 35 35 H 1.09004 * 109.47295 * 203.61909 * 20 11 9 36 36 H 1.09003 * 109.47435 * 323.61762 * 20 11 9 37 37 H 1.08991 * 109.47619 * 299.99868 * 21 20 11 38 38 H 1.09003 * 109.47126 * 60.00428 * 21 20 11 39 39 H 0.96706 * 117.00528 * 180.02562 * 24 22 21 40 40 H 1.08004 * 119.99859 * 180.25615 * 25 7 6 41 41 H 1.07998 * 120.00002 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5606 1.6227 5 6 2.3658 -1.9121 1.8683 6 6 2.6773 -2.3520 3.1412 7 6 2.8281 -1.4407 4.1697 8 6 3.1616 -1.9207 5.5587 9 6 4.6583 -1.9755 5.7255 10 8 5.3830 -1.6566 4.8066 11 7 5.1918 -2.3797 6.8954 12 6 4.3726 -2.7406 7.9338 13 1 3.4561 -2.1979 8.1124 14 6 4.7217 -3.8045 8.7566 15 7 4.2201 -3.8902 9.9683 16 14 5.9041 -5.1129 8.1406 17 1 7.2803 -4.7902 8.5954 18 1 5.5021 -6.4368 8.6799 19 1 5.8697 -5.1519 6.6564 20 6 6.6468 -2.4335 7.0573 21 6 7.1699 -1.0455 7.4321 22 6 8.6666 -1.1009 7.5993 23 8 9.2546 -2.1437 7.4349 24 8 9.3464 0.0079 7.9307 25 6 2.6779 -0.0889 3.9230 26 6 2.3664 0.3509 2.6500 27 1 -0.3633 0.6734 0.7763 28 1 -0.3633 0.3356 -0.9714 29 1 -0.3633 -1.0090 0.1950 30 1 2.2439 -2.6243 1.0656 31 1 2.7984 -3.4078 3.3332 32 1 2.7393 -1.2334 6.2918 33 1 2.7425 -2.9154 5.7098 34 1 4.4635 -4.6331 10.5425 35 1 6.8986 -3.1421 7.8464 36 1 7.1049 -2.7539 6.1215 37 1 6.9182 -0.3370 6.6431 38 1 6.7119 -0.7251 8.3679 39 1 10.3050 -0.0769 8.0263 40 1 2.7998 0.6234 4.7257 41 1 2.2449 1.4068 2.4582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599779284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:37 Heat of formation + Delta-G solvation = -131.141735 kcal Electronic energy + Delta-G solvation = -26670.028323 eV Core-core repulsion = 22642.058830 eV Total energy + Delta-G solvation = -4027.969493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -40.07198 -39.49023 -38.39242 -35.99799 -35.76877 -35.19322 -32.75904 -32.27022 -30.90122 -30.78876 -28.98790 -27.49026 -25.13518 -24.36837 -22.60231 -21.69633 -20.76738 -19.14763 -18.09626 -17.96640 -17.10524 -16.53194 -16.40151 -16.31763 -15.62854 -15.44059 -15.26361 -14.89992 -14.64916 -14.22347 -14.05198 -13.77381 -13.66657 -13.29697 -13.25342 -12.95232 -12.77515 -12.71221 -12.42077 -12.23743 -11.99487 -11.87433 -11.50148 -11.35523 -11.32412 -11.13317 -10.91621 -10.79057 -10.34499 -10.28651 -10.18675 -10.01134 -9.39266 -9.01954 -8.75598 -8.66344 -8.35567 -8.01295 -6.63848 -4.26016 1.02567 1.58801 1.87838 2.47650 2.65207 3.02602 3.16797 3.21207 3.25277 3.58648 3.70902 3.93646 4.03100 4.39331 4.79689 4.95347 5.00204 5.08538 5.11323 5.13249 5.31020 5.46750 5.57044 5.60847 5.71954 5.77552 5.88705 5.91321 5.98843 6.02333 6.23112 6.25870 6.28182 6.38740 6.44383 6.49370 6.69867 6.84157 7.12801 7.16144 7.89553 8.06219 8.12436 8.78636 9.16219 9.49555 10.45778 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.002962 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.402348 B = 9450.821877 C =10696.996967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.329 4.671 3 O -0.862 6.862 4 C -0.472 4.472 5 C -0.045 4.045 6 C -0.125 4.125 7 C -0.008 4.008 8 C -0.092 4.092 9 C 0.485 3.515 10 O -0.587 6.587 11 N -0.462 5.462 12 C -0.357 4.357 13 H 0.108 0.892 14 C 0.073 3.927 15 N -0.852 5.852 16 Si 0.866 3.134 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.259 1.259 20 C 0.116 3.884 21 C -0.124 4.124 22 C 0.485 3.515 23 O -0.520 6.520 24 O -0.520 6.520 25 C -0.123 4.123 26 C -0.053 4.053 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.277 0.723 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.404 0.596 40 H 0.121 0.879 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 2.302 -13.185 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.527 4.473 3 O -0.858 6.858 4 C -0.569 4.569 5 C -0.064 4.064 6 C -0.144 4.144 7 C -0.008 4.008 8 C -0.131 4.131 9 C 0.275 3.725 10 O -0.471 6.471 11 N -0.183 5.183 12 C -0.483 4.483 13 H 0.125 0.875 14 C -0.136 4.136 15 N -0.486 5.486 16 Si 0.693 3.307 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.183 1.183 20 C -0.007 4.007 21 C -0.163 4.163 22 C 0.327 3.673 23 O -0.408 6.408 24 O -0.331 6.331 25 C -0.142 4.142 26 C -0.072 4.072 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.262 0.738 40 H 0.139 0.861 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.704 2.378 -14.253 14.918 hybrid contribution 0.384 0.422 2.067 2.144 sum -3.320 2.800 -12.186 12.937 Atomic orbital electron populations 1.27785 1.23088 1.07793 1.06882 1.69298 0.85634 0.99423 0.92935 1.93093 1.73051 1.37295 1.82362 1.27351 1.14305 0.99741 1.15511 1.20713 0.95610 0.93345 0.96781 1.21136 1.00681 0.99826 0.92764 1.19849 0.92369 0.93355 0.95277 1.20559 0.95237 1.04260 0.93093 1.20220 0.89622 0.80987 0.81700 1.90603 1.62476 1.53549 1.40489 1.43705 1.03683 1.59474 1.11448 1.19076 1.06943 1.15658 1.06643 0.87497 1.25330 0.96713 0.97091 0.94452 1.69764 1.42912 1.30598 1.05287 0.87076 0.81067 0.81546 0.81024 1.19465 1.21148 1.18315 1.21402 0.83064 0.94155 1.02123 1.21766 0.86186 1.02430 1.05875 1.23703 0.91595 0.80487 0.71489 1.90702 1.71134 1.31751 1.47234 1.84579 1.26707 1.39750 1.82092 1.21085 1.00768 0.95380 0.97012 1.20964 0.94940 0.98951 0.92374 0.90155 0.88009 0.87182 0.85000 0.85543 0.88441 0.87710 0.91235 0.90222 0.90586 0.87405 0.86853 0.73831 0.86071 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.77 10.70 101.05 1.08 -2.69 16 2 S 1.33 12.19 14.19 -107.50 -1.53 10.66 16 3 O -0.86 -13.72 16.90 -35.23 -0.60 -14.32 16 4 C -0.47 -5.98 5.61 -39.58 -0.22 -6.20 16 5 C -0.05 -0.52 9.75 -39.58 -0.39 -0.91 16 6 C -0.12 -1.80 9.70 -39.58 -0.38 -2.19 16 7 C -0.01 -0.13 4.37 -104.62 -0.46 -0.59 16 8 C -0.09 -1.63 4.52 -29.04 -0.13 -1.76 16 9 C 0.49 10.40 7.58 -10.98 -0.08 10.31 16 10 O -0.59 -13.81 15.72 5.55 0.09 -13.72 16 11 N -0.46 -10.35 2.18 -114.81 -0.25 -10.60 16 12 C -0.36 -8.52 9.05 -14.93 -0.14 -8.65 16 13 H 0.11 2.61 7.24 -52.49 -0.38 2.23 16 14 C 0.07 1.82 5.26 -17.46 -0.09 1.73 16 15 N -0.85 -22.19 13.96 55.50 0.77 -21.42 16 16 Si 0.87 19.91 25.05 -169.99 -4.26 15.65 16 17 H -0.27 -6.24 6.69 56.52 0.38 -5.86 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.26 -6.04 7.11 56.52 0.40 -5.63 16 20 C 0.12 2.53 3.22 -4.05 -0.01 2.51 16 21 C -0.12 -2.29 6.08 -27.88 -0.17 -2.46 16 22 C 0.48 8.45 8.33 36.01 0.30 8.75 16 23 O -0.52 -10.52 16.74 -18.76 -0.31 -10.84 16 24 O -0.52 -7.08 13.42 -39.24 -0.53 -7.60 16 25 C -0.12 -1.99 9.70 -39.58 -0.38 -2.38 16 26 C -0.05 -0.82 9.44 -39.59 -0.37 -1.19 16 27 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.11 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.10 1.63 7.61 -51.93 -0.40 1.24 16 33 H 0.10 1.78 8.04 -51.93 -0.42 1.36 16 34 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.08 1.83 3.61 -51.93 -0.19 1.65 16 36 H 0.08 1.71 7.58 -51.93 -0.39 1.32 16 37 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 38 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 39 H 0.40 3.53 9.10 45.56 0.41 3.94 16 40 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 41 H 0.12 1.89 7.45 -52.49 -0.39 1.49 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -36.43 366.23 -6.83 -43.27 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -4.29 Total: 9.11 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.45 Total: -5.70 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.52 Total: -32.02 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.35 Total: -46.48 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.26 Total: 15.65 kcal Atomic # 16 Polarization: 12.19 SS G_CDS: -1.53 Total: 10.66 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.43 -6.83 -43.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599779284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.876 kcal (2) G-P(sol) polarization free energy of solvation -36.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds