Wall clock time and date at job start Tue Mar 31 2020 22:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42101 * 109.47000 * 2 1 4 4 C 1.76195 * 102.99960 * 109.06000 * 2 1 3 5 5 C 1.38241 * 119.99862 * 89.99907 * 4 2 1 6 6 C 1.38231 * 119.99969 * 179.97438 * 5 4 2 7 7 C 1.38236 * 119.99975 * 0.25578 * 6 5 4 8 8 C 1.50697 * 120.00143 * 179.72655 * 7 6 5 9 9 C 1.50699 * 109.47313 * 90.00215 * 8 7 6 10 10 O 1.21292 * 119.99938 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00302 * 180.02562 * 9 8 7 12 12 C 1.37097 * 119.99449 * 359.97438 * 11 9 8 13 13 H 1.07999 * 120.00195 * 322.25079 * 12 11 9 14 14 C 1.38952 * 119.99549 * 142.25560 * 12 11 9 15 15 N 1.31420 * 119.99903 * 157.63614 * 14 12 11 16 16 Si 1.86799 * 120.00365 * 337.63992 * 14 12 11 17 17 H 1.48494 * 109.47435 * 95.69966 * 16 14 12 18 18 H 1.48501 * 109.47152 * 215.70527 * 16 14 12 19 19 H 1.48507 * 109.46754 * 335.70099 * 16 14 12 20 20 C 1.46494 * 120.00130 * 179.97438 * 11 9 8 21 21 C 1.52998 * 109.47257 * 83.61463 * 20 11 9 22 22 C 1.50699 * 109.47359 * 179.97438 * 21 20 11 23 23 O 1.20835 * 119.99818 * 0.02562 * 22 21 20 24 24 O 1.34222 * 120.00337 * 180.02562 * 22 21 20 25 25 C 1.38241 * 119.99860 * 359.48864 * 7 6 5 26 26 C 1.38231 * 120.00193 * 269.97433 * 4 2 1 27 27 H 1.09002 * 109.46968 * 310.93962 * 1 2 3 28 28 H 1.09002 * 109.46912 * 70.94026 * 1 2 3 29 29 H 1.08999 * 109.47042 * 190.93786 * 1 2 3 30 30 H 1.07997 * 119.99985 * 359.97438 * 5 4 2 31 31 H 1.07998 * 120.00307 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47286 * 210.00048 * 8 7 6 33 33 H 1.08998 * 109.47119 * 329.99739 * 8 7 6 34 34 H 0.96993 * 119.99980 * 179.97438 * 15 14 12 35 35 H 1.09004 * 109.47295 * 203.61909 * 20 11 9 36 36 H 1.09003 * 109.47435 * 323.61762 * 20 11 9 37 37 H 1.08991 * 109.47619 * 299.99868 * 21 20 11 38 38 H 1.09003 * 109.47126 * 60.00428 * 21 20 11 39 39 H 0.96706 * 117.00528 * 180.02562 * 24 22 21 40 40 H 1.08004 * 119.99859 * 180.25615 * 25 7 6 41 41 H 1.07998 * 120.00002 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5606 1.6227 5 6 2.3658 -1.9121 1.8683 6 6 2.6773 -2.3520 3.1412 7 6 2.8281 -1.4407 4.1697 8 6 3.1616 -1.9207 5.5587 9 6 4.6583 -1.9755 5.7255 10 8 5.3830 -1.6566 4.8066 11 7 5.1918 -2.3797 6.8954 12 6 4.3726 -2.7406 7.9338 13 1 3.4561 -2.1979 8.1124 14 6 4.7217 -3.8045 8.7566 15 7 4.2201 -3.8902 9.9683 16 14 5.9041 -5.1129 8.1406 17 1 7.2803 -4.7902 8.5954 18 1 5.5021 -6.4368 8.6799 19 1 5.8697 -5.1519 6.6564 20 6 6.6468 -2.4335 7.0573 21 6 7.1699 -1.0455 7.4321 22 6 8.6666 -1.1009 7.5993 23 8 9.2546 -2.1437 7.4349 24 8 9.3464 0.0079 7.9307 25 6 2.6779 -0.0889 3.9230 26 6 2.3664 0.3509 2.6500 27 1 -0.3633 0.6734 0.7763 28 1 -0.3633 0.3356 -0.9714 29 1 -0.3633 -1.0090 0.1950 30 1 2.2439 -2.6243 1.0656 31 1 2.7984 -3.4078 3.3332 32 1 2.7393 -1.2334 6.2918 33 1 2.7425 -2.9154 5.7098 34 1 4.4635 -4.6331 10.5425 35 1 6.8986 -3.1421 7.8464 36 1 7.1049 -2.7539 6.1215 37 1 6.9182 -0.3370 6.6431 38 1 6.7119 -0.7251 8.3679 39 1 10.3050 -0.0769 8.0263 40 1 2.7998 0.6234 4.7257 41 1 2.2449 1.4068 2.4582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599779284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:36 Heat of formation + Delta-G solvation = -157.635744 kcal Electronic energy + Delta-G solvation = -26671.177189 eV Core-core repulsion = 22642.058830 eV Total energy + Delta-G solvation = -4029.118359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.52424 -40.91263 -39.74749 -37.35767 -36.91650 -36.82665 -34.33282 -33.87783 -32.47382 -31.87409 -29.66149 -28.79473 -26.97220 -25.92512 -23.69403 -22.92157 -22.16687 -20.91419 -19.40759 -19.03049 -18.65619 -18.10743 -17.91116 -17.51896 -17.07276 -16.73532 -16.67005 -16.03393 -15.78175 -15.72067 -15.60709 -14.91127 -14.85360 -14.58735 -14.50726 -14.40409 -14.23173 -13.96516 -13.66189 -13.52278 -13.33468 -13.09161 -12.97960 -12.76561 -12.71054 -12.64727 -12.44563 -12.07722 -11.96319 -11.85687 -11.74887 -11.23472 -11.22551 -10.63245 -9.96195 -9.85677 -9.83763 -9.28122 -8.57211 -6.18688 -0.01198 0.48277 1.02924 1.07823 1.18456 1.31254 1.39433 1.75206 1.83721 1.95672 2.14870 2.56890 2.81426 2.95421 3.07682 3.75743 3.82433 3.82891 3.88474 4.10304 4.27056 4.29285 4.35821 4.40770 4.50185 4.52065 4.57145 4.62475 4.72924 4.77248 4.81309 4.97675 5.13102 5.21583 5.31610 5.33120 5.33499 5.49037 5.67385 6.00782 6.07129 6.18261 6.90243 6.90672 7.33917 7.70268 8.55923 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.002962 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.402348 B = 9450.821877 C =10696.996967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.495 4.495 2 S 1.402 4.598 3 O -0.930 6.930 4 C -0.476 4.476 5 C -0.031 4.031 6 C -0.138 4.138 7 C -0.033 4.033 8 C -0.084 4.084 9 C 0.484 3.516 10 O -0.607 6.607 11 N -0.472 5.472 12 C -0.344 4.344 13 H 0.099 0.901 14 C 0.045 3.955 15 N -0.884 5.884 16 Si 0.907 3.093 17 H -0.275 1.275 18 H -0.278 1.278 19 H -0.266 1.266 20 C 0.114 3.886 21 C -0.119 4.119 22 C 0.496 3.504 23 O -0.551 6.551 24 O -0.505 6.505 25 C -0.142 4.142 26 C -0.077 4.077 27 H 0.059 0.941 28 H 0.123 0.877 29 H 0.142 0.858 30 H 0.191 0.809 31 H 0.140 0.860 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.281 0.719 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.429 0.571 40 H 0.115 0.885 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 1.547 -15.264 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 1.600 4.400 3 O -0.926 6.926 4 C -0.572 4.572 5 C -0.050 4.050 6 C -0.157 4.157 7 C -0.034 4.034 8 C -0.123 4.123 9 C 0.275 3.725 10 O -0.492 6.492 11 N -0.193 5.193 12 C -0.471 4.471 13 H 0.116 0.884 14 C -0.161 4.161 15 N -0.520 5.520 16 Si 0.734 3.266 17 H -0.202 1.202 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.010 4.010 21 C -0.157 4.157 22 C 0.340 3.660 23 O -0.442 6.442 24 O -0.319 6.319 25 C -0.161 4.161 26 C -0.097 4.097 27 H 0.078 0.922 28 H 0.141 0.859 29 H 0.160 0.840 30 H 0.208 0.792 31 H 0.158 0.842 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.291 0.709 40 H 0.133 0.867 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.314 1.642 -16.306 16.946 hybrid contribution 0.529 0.743 2.579 2.736 sum -3.784 2.385 -13.727 14.437 Atomic orbital electron populations 1.27744 1.20579 1.09494 1.07486 1.68470 0.85966 0.96270 0.89315 1.92970 1.75962 1.40868 1.82821 1.27906 1.12857 1.00085 1.16325 1.21335 0.92724 0.93759 0.97172 1.21494 1.00483 1.00231 0.93481 1.19833 0.94548 0.93840 0.95175 1.20495 0.92387 1.04823 0.94605 1.20828 0.91151 0.79582 0.80909 1.90579 1.63490 1.54109 1.41051 1.43799 1.03872 1.59995 1.11606 1.19009 1.06657 1.15046 1.06402 0.88372 1.25672 0.97746 0.98166 0.94531 1.69800 1.44615 1.31499 1.06080 0.86446 0.79629 0.80530 0.80045 1.20163 1.20455 1.19044 1.21332 0.82861 0.95807 1.00997 1.21584 0.87495 1.00432 1.06229 1.23301 0.91170 0.80671 0.70907 1.90700 1.71618 1.33059 1.48855 1.84502 1.28792 1.37558 1.81009 1.21123 1.01921 0.95534 0.97500 1.21024 0.96494 0.99070 0.93065 0.92158 0.85880 0.83971 0.79193 0.84231 0.88089 0.87003 0.90904 0.91543 0.91803 0.87046 0.86226 0.70906 0.86665 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -5.68 10.70 113.37 1.21 -4.47 16 2 S 1.40 22.15 14.19 -56.49 -0.80 21.35 16 3 O -0.93 -29.01 16.90 -148.98 -2.52 -31.53 16 4 C -0.48 -11.15 5.61 22.27 0.12 -11.02 16 5 C -0.03 -0.62 9.75 22.27 0.22 -0.40 16 6 C -0.14 -3.70 9.70 22.27 0.22 -3.49 16 7 C -0.03 -1.09 4.37 -19.87 -0.09 -1.18 16 8 C -0.08 -2.98 4.52 29.10 0.13 -2.85 16 9 C 0.48 20.88 7.58 87.66 0.66 21.55 16 10 O -0.61 -28.71 15.72 -3.07 -0.05 -28.76 16 11 N -0.47 -21.24 2.18 -635.54 -1.39 -22.63 16 12 C -0.34 -16.54 9.05 84.04 0.76 -15.78 16 13 H 0.10 4.85 7.24 -2.91 -0.02 4.83 16 14 C 0.04 2.24 5.26 84.93 0.45 2.69 16 15 N -0.88 -46.28 13.96 21.66 0.30 -45.98 16 16 Si 0.91 41.19 25.05 68.60 1.72 42.91 16 17 H -0.27 -12.70 6.69 99.48 0.67 -12.04 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 20 C 0.11 4.97 3.22 86.38 0.28 5.25 16 21 C -0.12 -4.36 6.08 29.85 0.18 -4.18 16 22 C 0.50 16.83 8.33 71.24 0.59 17.42 16 23 O -0.55 -22.04 16.74 21.94 0.37 -21.68 16 24 O -0.50 -12.68 13.42 -51.34 -0.69 -13.37 16 25 C -0.14 -4.69 9.70 22.27 0.22 -4.48 16 26 C -0.08 -2.40 9.44 22.27 0.21 -2.19 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.19 1.44 8.06 -2.91 -0.02 1.41 16 31 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.10 3.46 7.61 -2.39 -0.02 3.44 16 33 H 0.11 3.76 8.04 -2.39 -0.02 3.74 16 34 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 35 H 0.07 3.08 3.61 -2.38 -0.01 3.07 16 36 H 0.06 2.92 7.58 -2.39 -0.02 2.90 16 37 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 38 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 39 H 0.43 6.36 9.10 -74.05 -0.67 5.69 16 40 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 41 H 0.11 3.53 7.45 -2.91 -0.02 3.51 16 Total: -1.00 -80.76 366.23 2.47 -78.29 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.36 Total: 24.52 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.17 Total: -3.12 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -1.09 Total: -68.61 kcal Atomic # 8 Polarization: -92.45 SS G_CDS: -2.89 Total: -95.33 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.72 Total: 42.91 kcal Atomic # 16 Polarization: 22.15 SS G_CDS: -0.80 Total: 21.35 kcal Total: -80.76 2.47 -78.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599779284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.347 kcal (2) G-P(sol) polarization free energy of solvation -80.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds