Wall clock time and date at job start Tue Mar 31 2020 22:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46411 * 2 1 4 4 N 1.46494 * 109.47639 * 239.99859 * 2 1 3 5 5 C 1.34781 * 119.99967 * 84.99777 * 4 2 1 6 6 O 1.21702 * 119.99981 * 359.97438 * 5 4 2 7 7 C 1.46589 * 119.99833 * 180.02562 * 5 4 2 8 8 C 1.36640 * 125.45352 * 179.97438 * 7 5 4 9 9 C 1.37480 * 113.29308 * 179.97438 * 8 7 5 10 10 C 1.33817 * 115.10076 * 0.02562 * 9 8 7 11 11 S 1.70613 * 110.95292 * 359.76169 * 10 9 8 12 12 C 1.50699 * 109.47120 * 119.99439 * 2 1 3 13 13 O 1.20822 * 120.00105 * 100.83318 * 12 2 1 14 14 O 1.34235 * 120.00125 * 280.83049 * 12 2 1 15 15 C 1.45194 * 116.99791 * 184.85305 * 14 12 2 16 16 C 1.53011 * 109.46919 * 175.26321 * 15 14 12 17 17 C 1.50699 * 112.99702 * 53.53751 * 16 15 14 18 18 H 1.08004 * 119.99851 * 266.62869 * 17 16 15 19 19 C 1.37874 * 120.00023 * 86.63755 * 17 16 15 20 20 N 1.31515 * 120.00042 * 172.92285 * 19 17 16 21 21 Si 1.86805 * 120.00063 * 352.91746 * 19 17 16 22 22 H 1.48495 * 109.47047 * 94.60842 * 21 19 17 23 23 H 1.48494 * 109.46866 * 214.61156 * 21 19 17 24 24 H 1.48501 * 109.46962 * 334.61272 * 21 19 17 25 25 C 1.54039 * 113.81429 * 281.55102 * 16 15 14 26 26 O 1.44172 * 85.51600 * 223.19589 * 25 16 15 27 27 C 1.44180 * 93.34318 * 24.19283 * 26 25 16 28 28 H 1.08991 * 109.47475 * 304.80805 * 1 2 3 29 29 H 1.09004 * 109.46918 * 64.81303 * 1 2 3 30 30 H 1.09000 * 109.46519 * 184.80450 * 1 2 3 31 31 H 0.97002 * 119.99905 * 265.00071 * 4 2 1 32 32 H 1.07995 * 123.35860 * 359.94082 * 8 7 5 33 33 H 1.08003 * 122.44650 * 180.02562 * 9 8 7 34 34 H 1.07998 * 124.52128 * 179.97438 * 10 9 8 35 35 H 1.08994 * 109.47738 * 295.26335 * 15 14 12 36 36 H 1.08998 * 109.47459 * 55.26555 * 15 14 12 37 37 H 0.97001 * 120.00037 * 180.02562 * 20 19 17 38 38 H 1.09000 * 113.86504 * 337.34169 * 25 16 15 39 39 H 1.08996 * 113.86150 * 109.04735 * 25 16 15 40 40 H 1.08998 * 113.86652 * 221.65862 * 27 26 25 41 41 H 1.09001 * 113.98162 * 89.96481 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1472 -0.0182 -2.3571 6 8 1.8572 1.1625 -2.4119 7 6 2.6354 -0.7094 -3.5540 8 6 2.8077 -0.1392 -4.7837 9 6 3.2797 -1.0183 -5.7294 10 6 3.4869 -2.2658 -5.2916 11 16 3.0991 -2.4035 -3.6358 12 6 2.0324 -0.7103 1.2305 13 8 2.4191 -1.8523 1.1533 14 8 2.0501 -0.0742 2.4124 15 6 2.6465 -0.7804 3.5321 16 6 2.6827 0.1395 4.7544 17 6 1.3359 0.7272 5.0889 18 1 1.0563 1.6940 4.6971 19 6 0.4609 0.0308 5.8953 20 7 -0.6535 0.5991 6.3012 21 14 0.8582 -1.7201 6.4113 22 1 1.5258 -1.7059 7.7376 23 1 -0.3978 -2.5077 6.4976 24 1 1.7624 -2.3385 5.4087 25 6 3.8246 1.1727 4.7216 26 8 4.0152 0.8381 6.1110 27 6 3.4159 -0.4653 5.9665 28 1 -0.3634 0.5866 0.8437 29 1 -0.3633 0.4374 -0.9300 30 1 -0.3632 -1.0241 0.0861 31 1 2.2492 -1.6318 -1.1525 32 1 2.5938 0.8987 -4.9923 33 1 3.4694 -0.7237 -6.7510 34 1 3.8541 -3.0762 -5.9037 35 1 2.0533 -1.6656 3.7611 36 1 3.6619 -1.0805 3.2732 37 1 -1.2689 0.1093 6.8689 38 1 4.6590 0.8877 4.0809 39 1 3.4884 2.1964 4.5567 40 1 2.7557 -0.7408 6.7889 41 1 4.1240 -1.2520 5.7060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646889509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:31 Heat of formation + Delta-G solvation = -81.567806 kcal Electronic energy + Delta-G solvation = -26870.729447 eV Core-core repulsion = 22844.909641 eV Total energy + Delta-G solvation = -4025.819806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.68221 -39.89058 -39.36160 -37.82852 -36.28721 -35.08620 -32.90303 -31.68362 -30.66728 -29.60897 -26.15279 -25.86454 -25.48944 -24.67144 -23.86613 -21.81986 -20.45766 -19.71086 -19.22378 -19.04513 -17.30691 -16.94403 -16.41656 -16.36467 -15.96011 -15.93824 -15.74858 -15.22211 -15.10410 -14.69206 -14.35964 -13.94189 -13.74923 -13.55979 -13.17701 -13.12935 -12.96776 -12.70486 -12.62728 -12.44310 -12.17137 -12.08408 -11.64778 -11.32572 -11.14192 -10.65312 -10.46956 -10.44770 -10.35604 -10.26835 -10.00684 -9.59522 -9.51313 -9.27280 -9.21171 -8.96898 -8.75510 -8.64921 -6.25676 -4.25260 0.15144 1.10439 1.51701 2.04215 2.27279 2.52240 2.92402 3.08628 3.14145 3.23382 3.26032 4.19546 4.44994 4.50626 4.61702 4.79414 4.92743 4.97792 5.07239 5.08111 5.10838 5.33903 5.56739 5.59857 5.64514 5.70909 5.79816 5.80840 5.90855 5.92799 5.94704 6.04758 6.09625 6.17815 6.25662 6.56227 6.80483 6.91340 6.94906 7.14955 7.48063 7.83882 7.99553 8.32245 8.79794 9.33310 10.86657 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.020314 B = 0.002594 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.008257 B =10792.343632 C =10907.318850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.128 0.872 4 N -0.714 5.714 5 C 0.596 3.404 6 O -0.523 6.523 7 C -0.267 4.267 8 C -0.053 4.053 9 C -0.151 4.151 10 C -0.231 4.231 11 S 0.209 5.791 12 C 0.454 3.546 13 O -0.521 6.521 14 O -0.314 6.314 15 C 0.069 3.931 16 C -0.005 4.005 17 C -0.487 4.487 18 H 0.088 0.912 19 C 0.077 3.923 20 N -0.884 5.884 21 Si 0.868 3.132 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.259 1.259 25 C 0.040 3.960 26 O -0.369 6.369 27 C 0.023 3.977 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.407 0.593 32 H 0.156 0.844 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.267 0.733 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 -6.828 -21.433 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.145 0.855 4 N -0.369 5.369 5 C 0.383 3.617 6 O -0.400 6.400 7 C -0.387 4.387 8 C -0.087 4.087 9 C -0.182 4.182 10 C -0.369 4.369 11 S 0.476 5.524 12 C 0.297 3.703 13 O -0.411 6.411 14 O -0.227 6.227 15 C -0.005 4.005 16 C -0.006 4.006 17 C -0.524 4.524 18 H 0.106 0.894 19 C -0.126 4.126 20 N -0.520 5.520 21 Si 0.697 3.303 22 H -0.201 1.201 23 H -0.216 1.216 24 H -0.184 1.184 25 C -0.037 4.037 26 O -0.287 6.287 27 C -0.053 4.053 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.244 0.756 32 H 0.173 0.827 33 H 0.164 0.836 34 H 0.187 0.813 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.785 -7.391 -20.017 22.391 hybrid contribution 0.239 -0.733 -0.883 1.173 sum 7.024 -8.125 -20.901 23.499 Atomic orbital electron populations 1.22117 0.91209 1.03637 1.04680 1.20367 0.96606 0.97915 0.80315 0.85462 1.45725 1.67871 1.14625 1.08671 1.16863 0.77310 0.86056 0.81508 1.90859 1.49986 1.14711 1.84488 1.24573 1.16383 0.98865 0.98899 1.20827 0.96175 1.01534 0.90156 1.20069 1.04081 0.92453 1.01639 1.25386 1.08329 1.02355 1.00797 1.83277 1.58442 1.05962 1.04697 1.23483 0.75195 0.85564 0.86094 1.90602 1.45488 1.18607 1.86421 1.86593 1.72006 1.47173 1.16949 1.23970 0.95477 0.96612 0.84438 1.21666 0.97677 0.92231 0.89011 1.20322 0.95464 1.06162 1.30445 0.89415 1.24961 0.95071 0.97511 0.95095 1.69861 1.11074 1.36892 1.34201 0.87277 0.77869 0.85694 0.79428 1.20125 1.21606 1.18372 1.24001 0.95649 1.01305 0.82744 1.89579 1.83142 1.29696 1.26298 1.24255 0.94763 0.86947 0.99383 0.89055 0.90456 0.91734 0.75597 0.82688 0.83605 0.81307 0.91052 0.93171 0.92248 0.92384 0.89261 0.89724 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.47 37.16 0.35 -1.71 16 2 C 0.15 2.17 3.08 -69.08 -0.21 1.96 16 3 H 0.13 1.79 7.58 -51.93 -0.39 1.40 16 4 N -0.71 -9.10 5.03 -56.27 -0.28 -9.39 16 5 C 0.60 7.78 7.75 -12.89 -0.10 7.68 16 6 O -0.52 -8.22 16.50 5.19 0.09 -8.14 16 7 C -0.27 -2.83 6.45 -36.79 -0.24 -3.06 16 8 C -0.05 -0.49 10.01 -40.44 -0.40 -0.90 16 9 C -0.15 -1.08 10.15 -41.41 -0.42 -1.50 16 10 C -0.23 -1.53 10.92 29.18 0.32 -1.22 16 11 S 0.21 1.69 22.16 -107.50 -2.38 -0.70 16 12 C 0.45 7.74 7.20 36.01 0.26 8.00 16 13 O -0.52 -9.45 15.65 -18.75 -0.29 -9.74 16 14 O -0.31 -6.15 9.82 -39.27 -0.39 -6.53 16 15 C 0.07 1.40 4.60 37.16 0.17 1.57 16 16 C 0.00 -0.10 0.51 -154.57 -0.08 -0.18 16 17 C -0.49 -12.89 8.62 -34.44 -0.30 -13.19 16 18 H 0.09 2.54 8.06 -52.48 -0.42 2.11 16 19 C 0.08 2.10 5.42 -17.82 -0.10 2.00 16 20 N -0.88 -25.77 13.96 55.43 0.77 -25.00 16 21 Si 0.87 20.26 23.72 -169.99 -4.03 16.23 16 22 H -0.27 -6.27 6.72 56.52 0.38 -5.89 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.26 -5.56 4.91 56.52 0.28 -5.28 16 25 C 0.04 0.80 8.35 37.61 0.31 1.12 16 26 O -0.37 -8.26 12.40 -35.23 -0.44 -8.70 16 27 C 0.02 0.50 6.56 37.61 0.25 0.74 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.41 4.85 6.85 -40.82 -0.28 4.57 16 32 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.07 1.53 5.73 -51.93 -0.30 1.23 16 36 H 0.05 0.91 8.00 -51.93 -0.42 0.50 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.06 1.00 8.03 -51.93 -0.42 0.58 16 39 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 40 H 0.09 1.93 3.75 -51.93 -0.19 1.73 16 41 H 0.06 1.14 8.10 -51.93 -0.42 0.71 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -31.65 358.17 -6.82 -38.47 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.08 Total: 6.76 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.19 Total: 1.33 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.49 Total: -34.38 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -1.03 Total: -33.11 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.03 Total: 16.23 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.38 Total: -0.70 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.65 -6.82 -38.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646889509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.093 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds