Wall clock time and date at job start Tue Mar 31 2020 22:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46411 * 2 1 4 4 N 1.46494 * 109.47639 * 239.99859 * 2 1 3 5 5 C 1.34781 * 119.99967 * 84.99777 * 4 2 1 6 6 O 1.21702 * 119.99981 * 359.97438 * 5 4 2 7 7 C 1.46589 * 119.99833 * 180.02562 * 5 4 2 8 8 C 1.36640 * 125.45352 * 179.97438 * 7 5 4 9 9 C 1.37480 * 113.29308 * 179.97438 * 8 7 5 10 10 C 1.33817 * 115.10076 * 0.02562 * 9 8 7 11 11 S 1.70613 * 110.95292 * 359.76169 * 10 9 8 12 12 C 1.50699 * 109.47120 * 119.99439 * 2 1 3 13 13 O 1.20822 * 120.00105 * 100.83318 * 12 2 1 14 14 O 1.34235 * 120.00125 * 280.83049 * 12 2 1 15 15 C 1.45194 * 116.99791 * 184.85305 * 14 12 2 16 16 C 1.53011 * 109.46919 * 175.26321 * 15 14 12 17 17 C 1.50699 * 112.99702 * 53.53751 * 16 15 14 18 18 H 1.08004 * 119.99851 * 266.62869 * 17 16 15 19 19 C 1.37874 * 120.00023 * 86.63755 * 17 16 15 20 20 N 1.31515 * 120.00042 * 172.92285 * 19 17 16 21 21 Si 1.86805 * 120.00063 * 352.91746 * 19 17 16 22 22 H 1.48495 * 109.47047 * 94.60842 * 21 19 17 23 23 H 1.48494 * 109.46866 * 214.61156 * 21 19 17 24 24 H 1.48501 * 109.46962 * 334.61272 * 21 19 17 25 25 C 1.54039 * 113.81429 * 281.55102 * 16 15 14 26 26 O 1.44172 * 85.51600 * 223.19589 * 25 16 15 27 27 C 1.44180 * 93.34318 * 24.19283 * 26 25 16 28 28 H 1.08991 * 109.47475 * 304.80805 * 1 2 3 29 29 H 1.09004 * 109.46918 * 64.81303 * 1 2 3 30 30 H 1.09000 * 109.46519 * 184.80450 * 1 2 3 31 31 H 0.97002 * 119.99905 * 265.00071 * 4 2 1 32 32 H 1.07995 * 123.35860 * 359.94082 * 8 7 5 33 33 H 1.08003 * 122.44650 * 180.02562 * 9 8 7 34 34 H 1.07998 * 124.52128 * 179.97438 * 10 9 8 35 35 H 1.08994 * 109.47738 * 295.26335 * 15 14 12 36 36 H 1.08998 * 109.47459 * 55.26555 * 15 14 12 37 37 H 0.97001 * 120.00037 * 180.02562 * 20 19 17 38 38 H 1.09000 * 113.86504 * 337.34169 * 25 16 15 39 39 H 1.08996 * 113.86150 * 109.04735 * 25 16 15 40 40 H 1.08998 * 113.86652 * 221.65862 * 27 26 25 41 41 H 1.09001 * 113.98162 * 89.96481 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1472 -0.0182 -2.3571 6 8 1.8572 1.1625 -2.4119 7 6 2.6354 -0.7094 -3.5540 8 6 2.8077 -0.1392 -4.7837 9 6 3.2797 -1.0183 -5.7294 10 6 3.4869 -2.2658 -5.2916 11 16 3.0991 -2.4035 -3.6358 12 6 2.0324 -0.7103 1.2305 13 8 2.4191 -1.8523 1.1533 14 8 2.0501 -0.0742 2.4124 15 6 2.6465 -0.7804 3.5321 16 6 2.6827 0.1395 4.7544 17 6 1.3359 0.7272 5.0889 18 1 1.0563 1.6940 4.6971 19 6 0.4609 0.0308 5.8953 20 7 -0.6535 0.5991 6.3012 21 14 0.8582 -1.7201 6.4113 22 1 1.5258 -1.7059 7.7376 23 1 -0.3978 -2.5077 6.4976 24 1 1.7624 -2.3385 5.4087 25 6 3.8246 1.1727 4.7216 26 8 4.0152 0.8381 6.1110 27 6 3.4159 -0.4653 5.9665 28 1 -0.3634 0.5866 0.8437 29 1 -0.3633 0.4374 -0.9300 30 1 -0.3632 -1.0241 0.0861 31 1 2.2492 -1.6318 -1.1525 32 1 2.5938 0.8987 -4.9923 33 1 3.4694 -0.7237 -6.7510 34 1 3.8541 -3.0762 -5.9037 35 1 2.0533 -1.6656 3.7611 36 1 3.6619 -1.0805 3.2732 37 1 -1.2689 0.1093 6.8689 38 1 4.6590 0.8877 4.0809 39 1 3.4884 2.1964 4.5567 40 1 2.7557 -0.7408 6.7889 41 1 4.1240 -1.2520 5.7060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646889509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:30 Heat of formation + Delta-G solvation = -104.036662 kcal Electronic energy + Delta-G solvation = -26871.703770 eV Core-core repulsion = 22844.909641 eV Total energy + Delta-G solvation = -4026.794128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02881 -41.34300 -40.64808 -38.52717 -37.69837 -36.25691 -34.88950 -32.88908 -32.26709 -30.38545 -27.79831 -27.43471 -26.62099 -26.17951 -25.08134 -22.81032 -21.64643 -21.03740 -20.50965 -19.90969 -18.80365 -18.18991 -18.03150 -17.93791 -17.37441 -17.03486 -16.79387 -16.43510 -16.40531 -16.12428 -15.73382 -15.43737 -14.94173 -14.87527 -14.74565 -14.09819 -14.04138 -13.78826 -13.71379 -13.64651 -13.40989 -13.19794 -12.90803 -12.81765 -12.36186 -12.24320 -12.13196 -11.95552 -11.94505 -11.52518 -11.38769 -11.37488 -11.04907 -10.66901 -10.58088 -10.42011 -9.89762 -9.56433 -8.34385 -6.38274 -0.53367 0.46148 0.91762 0.93627 1.22723 1.25785 1.30261 1.37898 1.38578 2.02713 2.12272 2.24635 2.76985 3.12030 3.30456 3.61114 3.76345 3.84678 3.95553 4.03986 4.14196 4.24657 4.26162 4.34019 4.38232 4.45353 4.53968 4.54192 4.56241 4.64572 4.92358 4.98592 5.02469 5.07210 5.20438 5.21205 5.30975 5.35790 5.41976 5.56759 6.16934 6.21862 6.56239 6.66355 6.87004 7.23937 8.81807 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.020314 B = 0.002594 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.008257 B =10792.343632 C =10907.318850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.126 0.874 4 N -0.709 5.709 5 C 0.597 3.403 6 O -0.559 6.559 7 C -0.305 4.305 8 C -0.050 4.050 9 C -0.159 4.159 10 C -0.213 4.213 11 S 0.221 5.779 12 C 0.458 3.542 13 O -0.528 6.528 14 O -0.332 6.332 15 C 0.073 3.927 16 C -0.019 4.019 17 C -0.487 4.487 18 H 0.043 0.957 19 C 0.019 3.981 20 N -0.938 5.938 21 Si 0.923 3.077 22 H -0.265 1.265 23 H -0.296 1.296 24 H -0.225 1.225 25 C 0.047 3.953 26 O -0.391 6.391 27 C 0.025 3.975 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.412 0.588 32 H 0.153 0.847 33 H 0.173 0.827 34 H 0.201 0.799 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.267 0.733 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.266 -9.452 -23.567 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 H 0.143 0.857 4 N -0.364 5.364 5 C 0.386 3.614 6 O -0.439 6.439 7 C -0.425 4.425 8 C -0.085 4.085 9 C -0.189 4.189 10 C -0.351 4.351 11 S 0.488 5.512 12 C 0.301 3.699 13 O -0.419 6.419 14 O -0.246 6.246 15 C -0.001 4.001 16 C -0.020 4.020 17 C -0.524 4.524 18 H 0.061 0.939 19 C -0.179 4.179 20 N -0.577 5.577 21 Si 0.749 3.251 22 H -0.191 1.191 23 H -0.223 1.223 24 H -0.148 1.148 25 C -0.029 4.029 26 O -0.310 6.310 27 C -0.051 4.051 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.250 0.750 32 H 0.170 0.830 33 H 0.190 0.810 34 H 0.218 0.782 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.173 -10.037 -22.173 26.010 hybrid contribution -0.467 0.152 -0.358 0.608 sum 8.706 -9.885 -22.532 26.100 Atomic orbital electron populations 1.22072 0.90479 1.03868 1.04660 1.20311 0.97055 0.97617 0.79719 0.85657 1.45663 1.67822 1.14739 1.08161 1.17211 0.76469 0.85706 0.82006 1.90830 1.51754 1.16249 1.85096 1.24421 1.19135 1.00649 0.98318 1.21062 0.95263 1.01925 0.90232 1.20293 1.03983 0.92213 1.02451 1.25822 1.06217 1.02994 1.00067 1.83222 1.58101 1.03857 1.05993 1.23878 0.74662 0.85503 0.85876 1.90587 1.45873 1.18950 1.86454 1.86599 1.72524 1.47775 1.17720 1.23761 0.96999 0.95349 0.84000 1.21612 0.95910 0.93799 0.90679 1.20458 0.97851 1.04580 1.29545 0.93854 1.25792 0.94808 1.01953 0.95354 1.70020 1.12726 1.38930 1.35994 0.86358 0.78084 0.80419 0.80235 1.19129 1.22315 1.14814 1.24122 0.96005 1.00439 0.82345 1.89557 1.83252 1.30548 1.27628 1.24390 0.95227 0.87612 0.97892 0.90058 0.89646 0.91172 0.74986 0.82953 0.81012 0.78204 0.92027 0.90105 0.92367 0.88268 0.90201 0.91309 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.47 71.98 0.68 -3.31 16 2 C 0.16 4.46 3.08 44.25 0.14 4.60 16 3 H 0.13 3.58 7.58 -2.38 -0.02 3.57 16 4 N -0.71 -17.65 5.03 -450.15 -2.27 -19.92 16 5 C 0.60 15.49 7.75 86.42 0.67 16.16 16 6 O -0.56 -17.88 16.50 -4.35 -0.07 -17.95 16 7 C -0.31 -6.17 6.45 24.08 0.16 -6.01 16 8 C -0.05 -0.86 10.01 21.72 0.22 -0.64 16 9 C -0.16 -1.81 10.15 21.09 0.21 -1.59 16 10 C -0.21 -2.09 10.92 66.81 0.73 -1.36 16 11 S 0.22 3.08 22.16 -56.49 -1.25 1.83 16 12 C 0.46 15.13 7.20 71.24 0.51 15.64 16 13 O -0.53 -18.15 15.65 21.97 0.34 -17.81 16 14 O -0.33 -12.76 9.82 -51.47 -0.51 -13.27 16 15 C 0.07 2.79 4.60 71.99 0.33 3.12 16 16 C -0.02 -0.81 0.51 -52.22 -0.03 -0.84 16 17 C -0.49 -26.46 8.62 25.60 0.22 -26.24 16 18 H 0.04 2.66 8.06 -2.91 -0.02 2.63 16 19 C 0.02 1.07 5.42 84.65 0.46 1.53 16 20 N -0.94 -57.01 13.96 21.45 0.30 -56.71 16 21 Si 0.92 41.43 23.72 68.60 1.63 43.06 16 22 H -0.26 -11.43 6.72 99.48 0.67 -10.76 16 23 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.22 -8.77 4.91 99.48 0.49 -8.29 16 25 C 0.05 1.81 8.35 72.28 0.60 2.42 16 26 O -0.39 -16.79 12.40 -148.98 -1.85 -18.64 16 27 C 0.03 1.00 6.56 72.27 0.47 1.48 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.41 9.37 6.85 -92.71 -0.63 8.74 16 32 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 34 H 0.20 0.69 8.06 -2.91 -0.02 0.66 16 35 H 0.06 2.46 5.73 -2.39 -0.01 2.45 16 36 H 0.08 2.61 8.00 -2.39 -0.02 2.59 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.10 3.02 8.03 -2.39 -0.02 3.00 16 39 H 0.08 3.17 8.09 -2.39 -0.02 3.15 16 40 H 0.07 2.97 3.75 -2.39 -0.01 2.96 16 41 H 0.11 3.33 8.10 -2.39 -0.02 3.31 16 Total: -1.00 -71.05 358.17 1.90 -69.16 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.19 Total: 25.31 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 5.38 Total: 4.95 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -1.97 Total: -76.63 kcal Atomic # 8 Polarization: -65.59 SS G_CDS: -2.08 Total: -67.67 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.63 Total: 43.06 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.25 Total: 1.83 kcal Total: -71.05 1.90 -69.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646889509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.881 kcal (2) G-P(sol) polarization free energy of solvation -71.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds