Wall clock time and date at job start Tue Mar 31 2020 22:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21270 * 120.00271 * 2 1 4 4 N 1.34783 * 119.99531 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99631 * 179.97438 * 4 2 1 6 6 C 1.50697 * 109.47094 * 180.02562 * 5 4 2 7 7 C 1.34021 * 124.49975 * 89.99809 * 6 5 4 8 8 C 1.37207 * 115.14732 * 179.97438 * 7 6 5 9 9 C 1.37180 * 113.24359 * 0.02562 * 8 7 6 10 10 C 1.41228 * 125.47992 * 180.02562 * 9 8 7 11 11 O 1.21444 * 120.00552 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99843 * 179.97438 * 10 9 8 13 13 O 1.45202 * 109.46995 * 179.97438 * 12 10 9 14 14 C 1.34228 * 117.00107 * 179.97438 * 13 12 10 15 15 O 1.20822 * 119.99844 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00316 * 180.02562 * 14 13 12 17 17 H 1.09007 * 109.46871 * 59.99983 * 16 14 13 18 18 C 1.53000 * 109.47177 * 300.00594 * 16 14 13 19 19 C 1.50694 * 109.47166 * 180.02562 * 16 14 13 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 16 14 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 S 1.70610 * 124.50422 * 270.27156 * 6 5 4 28 28 H 1.08996 * 109.47358 * 270.00088 * 1 2 3 29 29 H 1.09002 * 109.46877 * 30.00367 * 1 2 3 30 30 H 1.09003 * 109.47711 * 150.00110 * 1 2 3 31 31 H 0.96997 * 120.00163 * 0.02562 * 4 2 1 32 32 H 1.08998 * 109.47237 * 60.00483 * 5 4 2 33 33 H 1.09001 * 109.47163 * 299.99802 * 5 4 2 34 34 H 1.07997 * 122.42867 * 359.97438 * 7 6 5 35 35 H 1.08008 * 123.37703 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.46984 * 60.00002 * 12 10 9 37 37 H 1.08998 * 109.47262 * 299.99431 * 12 10 9 38 38 H 1.08998 * 109.47089 * 59.99668 * 18 16 14 39 39 H 1.08995 * 109.47131 * 179.97438 * 18 16 14 40 40 H 1.09002 * 109.47106 * 299.99721 * 18 16 14 41 41 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1481 -2.5881 0.0001 7 6 4.4007 -3.3041 -1.1044 8 6 4.8525 -4.5803 -0.8813 9 6 4.9628 -4.8905 0.4504 10 6 5.4016 -6.1281 0.9702 11 8 5.7191 -7.0254 0.2158 12 6 5.4760 -6.3355 2.4611 13 8 5.9515 -7.6788 2.7397 14 6 6.0758 -8.0258 4.0304 15 8 5.7960 -7.2335 4.8986 16 6 6.5642 -9.4036 4.3967 17 1 7.5622 -9.5565 3.9857 18 6 5.6099 -10.4525 3.8221 19 6 6.6124 -9.5371 5.8969 20 1 6.3183 -8.7075 6.5227 21 6 7.0319 -10.7186 6.4708 22 7 7.3895 -11.7291 5.7088 23 14 7.0923 -10.8838 8.3305 24 1 7.5735 -12.2416 8.6914 25 1 8.0181 -9.8655 8.8881 26 1 5.7326 -10.6760 8.8903 27 16 4.4645 -3.5012 1.4061 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6958 -2.0073 0.0005 32 1 4.0095 -0.6530 0.8895 33 1 4.0088 -0.6541 -0.8905 34 1 4.2588 -2.9054 -2.0980 35 1 5.0969 -5.2713 -1.6746 36 1 4.4853 -6.2036 2.8961 37 1 6.1632 -5.6092 2.8951 38 1 5.5747 -10.3560 2.7370 39 1 5.9634 -11.4490 4.0867 40 1 4.6120 -10.2996 4.2331 41 1 7.6850 -12.5601 6.1126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649878599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:28 Heat of formation + Delta-G solvation = -130.645906 kcal Electronic energy + Delta-G solvation = -25316.472031 eV Core-core repulsion = 21288.524039 eV Total energy + Delta-G solvation = -4027.947992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.27536 -40.07932 -39.30254 -38.00896 -35.71224 -35.29077 -33.91543 -31.98950 -30.84241 -30.33949 -28.91026 -26.59819 -25.21329 -23.94871 -23.09991 -21.51157 -21.18827 -19.95589 -19.29207 -18.00891 -17.19660 -16.93832 -16.59906 -16.40643 -16.27063 -15.90100 -15.77833 -15.69373 -14.77624 -14.66284 -14.48663 -14.08869 -13.83800 -13.79479 -13.36881 -13.04389 -12.87187 -12.77965 -12.64257 -12.58405 -12.34576 -12.13540 -11.56006 -11.33242 -11.05699 -10.84628 -10.71257 -10.51627 -10.39737 -10.25603 -10.11341 -10.02811 -9.70508 -9.28648 -9.20940 -9.08006 -9.07144 -8.46247 -6.11627 -4.17768 -0.23817 0.94910 1.38161 1.67333 2.12723 2.54633 2.81978 3.03876 3.19986 3.31571 3.34542 3.39957 3.92903 4.09321 4.32722 4.40792 4.58175 4.71942 4.78660 4.88671 4.94531 5.02690 5.12451 5.13406 5.18488 5.21533 5.33218 5.46716 5.67106 5.75252 5.83526 5.98370 6.66403 6.86093 6.86378 6.91182 7.08439 7.28380 7.41914 7.66512 7.72883 7.92347 8.11518 8.73902 8.90129 9.47605 10.95617 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.021135 B = 0.001963 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.507401 B =14262.953788 C =15123.608115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.512 3.488 3 O -0.545 6.545 4 N -0.730 5.730 5 C 0.190 3.810 6 C -0.226 4.226 7 C -0.131 4.131 8 C -0.045 4.045 9 C -0.289 4.289 10 C 0.420 3.580 11 O -0.417 6.417 12 C 0.013 3.987 13 O -0.344 6.344 14 C 0.465 3.535 15 O -0.516 6.516 16 C 0.059 3.941 17 H 0.066 0.934 18 C -0.134 4.134 19 C -0.514 4.514 20 H 0.075 0.925 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.275 1.275 26 H -0.275 1.275 27 S 0.255 5.745 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.405 0.595 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.025 0.975 39 H 0.097 0.903 40 H 0.031 0.969 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.736 19.629 -15.095 27.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.422 6.422 4 N -0.384 5.384 5 C 0.065 3.935 6 C -0.347 4.347 7 C -0.164 4.164 8 C -0.078 4.078 9 C -0.408 4.408 10 C 0.296 3.704 11 O -0.291 6.291 12 C -0.063 4.063 13 O -0.262 6.262 14 C 0.310 3.690 15 O -0.403 6.403 16 C 0.041 3.959 17 H 0.084 0.916 18 C -0.192 4.192 19 C -0.552 4.552 20 H 0.093 0.907 21 C -0.140 4.140 22 N -0.529 5.529 23 Si 0.734 3.266 24 H -0.212 1.212 25 H -0.201 1.201 26 H -0.201 1.201 27 S 0.525 5.475 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.240 0.760 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.166 0.834 35 H 0.175 0.825 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.044 0.956 39 H 0.115 0.885 40 H 0.050 0.950 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.263 20.294 -13.635 26.919 hybrid contribution -0.112 -0.596 -0.531 0.806 sum -11.374 19.698 -14.166 26.797 Atomic orbital electron populations 1.21893 0.91144 1.05094 1.05107 1.20889 0.90783 0.83135 0.75240 1.90748 1.70808 1.31355 1.49337 1.46221 1.06572 1.09337 1.76234 1.19683 0.80310 0.89437 1.04096 1.24412 1.09538 1.01670 0.99052 1.20042 1.02790 0.93833 0.99695 1.20986 0.95365 0.96200 0.95278 1.24091 1.16872 1.01316 0.98549 1.19841 0.75082 0.85161 0.90359 1.90649 1.35321 1.42179 1.60998 1.23078 1.02248 0.86548 0.94389 1.86757 1.78178 1.29797 1.31442 1.25572 0.72973 0.92241 0.78190 1.90497 1.46998 1.53100 1.49659 1.18792 0.97156 0.82071 0.97928 0.91593 1.21744 0.97810 1.03165 0.96500 1.21074 1.45194 0.99878 0.89094 0.90658 1.24948 0.94777 0.95420 0.98865 1.69876 1.44129 1.03802 1.35086 0.86413 0.78628 0.77034 0.84521 1.21207 1.20081 1.20094 1.83408 1.57164 1.01128 1.05772 0.88561 0.88677 0.90006 0.76024 0.89916 0.89169 0.83414 0.82455 0.88428 0.88373 0.95550 0.88476 0.94992 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.30 36.01 0.37 -0.22 16 2 C 0.51 3.64 7.94 -10.98 -0.09 3.56 16 3 O -0.55 -6.40 17.10 5.57 0.10 -6.31 16 4 N -0.73 -3.95 5.55 -61.47 -0.34 -4.29 16 5 C 0.19 1.18 6.10 -5.19 -0.03 1.15 16 6 C -0.23 -1.47 5.65 -35.79 -0.20 -1.68 16 7 C -0.13 -0.86 9.99 -41.44 -0.41 -1.27 16 8 C -0.05 -0.39 9.95 -40.34 -0.40 -0.79 16 9 C -0.29 -3.01 6.23 -38.83 -0.24 -3.26 16 10 C 0.42 5.90 7.01 -33.17 -0.23 5.67 16 11 O -0.42 -7.22 16.88 -14.23 -0.24 -7.46 16 12 C 0.01 0.20 5.24 36.01 0.19 0.39 16 13 O -0.34 -7.04 9.66 -45.89 -0.44 -7.49 16 14 C 0.47 10.88 7.25 36.00 0.26 11.14 16 15 O -0.52 -12.68 15.21 -18.75 -0.29 -12.97 16 16 C 0.06 1.52 2.74 -92.93 -0.25 1.26 16 17 H 0.07 1.75 8.14 -51.92 -0.42 1.32 16 18 C -0.13 -3.22 8.90 37.16 0.33 -2.89 16 19 C -0.51 -14.34 8.37 -34.44 -0.29 -14.62 16 20 H 0.08 2.16 6.76 -52.49 -0.35 1.81 16 21 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 22 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 23 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 S 0.26 2.01 22.37 -107.50 -2.40 -0.40 16 28 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.40 1.37 8.46 -40.82 -0.35 1.02 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.16 1.28 8.02 -52.48 -0.42 0.86 16 36 H 0.10 1.36 8.13 -51.93 -0.42 0.94 16 37 H 0.10 1.38 8.13 -51.93 -0.42 0.95 16 38 H 0.03 0.57 8.11 -51.93 -0.42 0.14 16 39 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -34.50 376.97 -8.65 -43.14 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.22 Total: -2.12 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -1.10 Total: 0.03 kcal Atomic # 7 Polarization: -28.71 SS G_CDS: 0.29 Total: -28.43 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.87 Total: -34.22 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.40 Total: -0.40 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.50 -8.65 -43.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649878599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.503 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds