Wall clock time and date at job start Tue Mar 31 2020 22:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21270 * 120.00271 * 2 1 4 4 N 1.34783 * 119.99531 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99631 * 179.97438 * 4 2 1 6 6 C 1.50697 * 109.47094 * 180.02562 * 5 4 2 7 7 C 1.34021 * 124.49975 * 89.99809 * 6 5 4 8 8 C 1.37207 * 115.14732 * 179.97438 * 7 6 5 9 9 C 1.37180 * 113.24359 * 0.02562 * 8 7 6 10 10 C 1.41228 * 125.47992 * 180.02562 * 9 8 7 11 11 O 1.21444 * 120.00552 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99843 * 179.97438 * 10 9 8 13 13 O 1.45202 * 109.46995 * 179.97438 * 12 10 9 14 14 C 1.34228 * 117.00107 * 179.97438 * 13 12 10 15 15 O 1.20822 * 119.99844 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00316 * 180.02562 * 14 13 12 17 17 H 1.09007 * 109.46871 * 59.99983 * 16 14 13 18 18 C 1.53000 * 109.47177 * 300.00594 * 16 14 13 19 19 C 1.50694 * 109.47166 * 180.02562 * 16 14 13 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 16 14 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 S 1.70610 * 124.50422 * 270.27156 * 6 5 4 28 28 H 1.08996 * 109.47358 * 270.00088 * 1 2 3 29 29 H 1.09002 * 109.46877 * 30.00367 * 1 2 3 30 30 H 1.09003 * 109.47711 * 150.00110 * 1 2 3 31 31 H 0.96997 * 120.00163 * 0.02562 * 4 2 1 32 32 H 1.08998 * 109.47237 * 60.00483 * 5 4 2 33 33 H 1.09001 * 109.47163 * 299.99802 * 5 4 2 34 34 H 1.07997 * 122.42867 * 359.97438 * 7 6 5 35 35 H 1.08008 * 123.37703 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.46984 * 60.00002 * 12 10 9 37 37 H 1.08998 * 109.47262 * 299.99431 * 12 10 9 38 38 H 1.08998 * 109.47089 * 59.99668 * 18 16 14 39 39 H 1.08995 * 109.47131 * 179.97438 * 18 16 14 40 40 H 1.09002 * 109.47106 * 299.99721 * 18 16 14 41 41 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1481 -2.5881 0.0001 7 6 4.4007 -3.3041 -1.1044 8 6 4.8525 -4.5803 -0.8813 9 6 4.9628 -4.8905 0.4504 10 6 5.4016 -6.1281 0.9702 11 8 5.7191 -7.0254 0.2158 12 6 5.4760 -6.3355 2.4611 13 8 5.9515 -7.6788 2.7397 14 6 6.0758 -8.0258 4.0304 15 8 5.7960 -7.2335 4.8986 16 6 6.5642 -9.4036 4.3967 17 1 7.5622 -9.5565 3.9857 18 6 5.6099 -10.4525 3.8221 19 6 6.6124 -9.5371 5.8969 20 1 6.3183 -8.7075 6.5227 21 6 7.0319 -10.7186 6.4708 22 7 7.3895 -11.7291 5.7088 23 14 7.0923 -10.8838 8.3305 24 1 7.5735 -12.2416 8.6914 25 1 8.0181 -9.8655 8.8881 26 1 5.7326 -10.6760 8.8903 27 16 4.4645 -3.5012 1.4061 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6958 -2.0073 0.0005 32 1 4.0095 -0.6530 0.8895 33 1 4.0088 -0.6541 -0.8905 34 1 4.2588 -2.9054 -2.0980 35 1 5.0969 -5.2713 -1.6746 36 1 4.4853 -6.2036 2.8961 37 1 6.1632 -5.6092 2.8951 38 1 5.5747 -10.3560 2.7370 39 1 5.9634 -11.4490 4.0867 40 1 4.6120 -10.2996 4.2331 41 1 7.6850 -12.5601 6.1126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649878599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:27 Heat of formation + Delta-G solvation = -151.921050 kcal Electronic energy + Delta-G solvation = -25317.394590 eV Core-core repulsion = 21288.524039 eV Total energy + Delta-G solvation = -4028.870551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67528 -40.78959 -40.55783 -38.80691 -37.40963 -35.94649 -35.91961 -32.88317 -32.56494 -31.20299 -29.71419 -27.43704 -27.26657 -25.07418 -24.38545 -22.52269 -21.71726 -21.67409 -20.09240 -18.90166 -18.70063 -18.01309 -17.91497 -17.68063 -17.47396 -17.08631 -16.91683 -16.39515 -16.31944 -16.06409 -15.47314 -15.15505 -14.77322 -14.63483 -14.44785 -14.23673 -13.93558 -13.76081 -13.45660 -13.41212 -13.25688 -13.18326 -12.98307 -12.87639 -12.79215 -12.62780 -12.31870 -12.05308 -11.98249 -11.87166 -11.33646 -11.13863 -11.13525 -10.99300 -10.54055 -10.24926 -9.99491 -9.70324 -8.19918 -6.34086 -0.99653 0.26774 0.72962 0.89636 1.33906 1.42930 1.45880 1.51333 1.60132 1.62056 1.71100 2.34878 2.42746 2.89729 3.10088 3.36327 3.84687 3.92116 3.92379 4.02730 4.04352 4.16475 4.27742 4.44573 4.51162 4.61708 4.66170 4.68229 4.87418 4.90365 4.95493 5.00814 5.09230 5.21017 5.28012 5.29750 5.39886 5.66589 5.85560 6.07004 6.21618 6.47580 6.71997 6.93772 7.17952 7.34678 8.86493 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.021135 B = 0.001963 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.507401 B =14262.953788 C =15123.608115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.509 3.491 3 O -0.598 6.598 4 N -0.719 5.719 5 C 0.189 3.811 6 C -0.203 4.203 7 C -0.128 4.128 8 C -0.029 4.029 9 C -0.325 4.325 10 C 0.433 3.567 11 O -0.464 6.464 12 C 0.002 3.998 13 O -0.351 6.351 14 C 0.474 3.526 15 O -0.532 6.532 16 C 0.050 3.950 17 H 0.049 0.951 18 C -0.121 4.121 19 C -0.538 4.538 20 H 0.061 0.939 21 C 0.020 3.980 22 N -0.910 5.910 23 Si 0.968 3.032 24 H -0.276 1.276 25 H -0.273 1.273 26 H -0.272 1.272 27 S 0.271 5.729 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.417 0.583 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.175 0.825 35 H 0.160 0.840 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.032 0.968 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.110 20.852 -15.550 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.298 3.702 3 O -0.479 6.479 4 N -0.373 5.373 5 C 0.063 3.937 6 C -0.324 4.324 7 C -0.160 4.160 8 C -0.063 4.063 9 C -0.444 4.444 10 C 0.312 3.688 11 O -0.341 6.341 12 C -0.073 4.073 13 O -0.268 6.268 14 C 0.320 3.680 15 O -0.421 6.421 16 C 0.031 3.969 17 H 0.067 0.933 18 C -0.179 4.179 19 C -0.576 4.576 20 H 0.079 0.921 21 C -0.180 4.180 22 N -0.548 5.548 23 Si 0.792 3.208 24 H -0.201 1.201 25 H -0.198 1.198 26 H -0.197 1.197 27 S 0.542 5.458 28 H 0.126 0.874 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.254 0.746 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.192 0.808 35 H 0.178 0.822 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.658 21.498 -14.099 28.656 hybrid contribution 0.280 -0.836 -0.492 1.010 sum -12.378 20.662 -14.592 28.161 Atomic orbital electron populations 1.21918 0.88174 1.06314 1.06208 1.21551 0.92207 0.82509 0.73951 1.90728 1.72058 1.33183 1.51929 1.46154 1.06246 1.09678 1.75240 1.19676 0.80932 0.88875 1.04171 1.24498 1.07849 1.01427 0.98600 1.20203 1.02148 0.92762 1.00888 1.21191 0.93611 0.96932 0.94605 1.23758 1.19923 1.00897 0.99780 1.19846 0.73907 0.85993 0.89080 1.90637 1.38218 1.43901 1.61383 1.23565 1.03386 0.84076 0.96275 1.86675 1.77995 1.32766 1.29380 1.24927 0.72738 0.91372 0.78991 1.90473 1.47866 1.53375 1.50394 1.18709 0.96847 0.84220 0.97172 0.93291 1.21567 0.97259 1.01622 0.97448 1.21210 1.46201 0.99919 0.90245 0.92077 1.25702 0.94141 0.94956 1.03203 1.69970 1.44013 1.04093 1.36731 0.85466 0.78698 0.77369 0.79258 1.20089 1.19827 1.19679 1.83400 1.56728 0.99947 1.05751 0.87381 0.88865 0.87404 0.74553 0.90434 0.88708 0.80784 0.82203 0.86723 0.86928 0.93853 0.90256 0.94865 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.30 71.24 0.73 0.01 16 2 C 0.51 6.35 7.94 87.66 0.70 7.04 16 3 O -0.60 -13.65 17.10 -3.00 -0.05 -13.71 16 4 N -0.72 -6.01 5.55 -466.80 -2.59 -8.60 16 5 C 0.19 1.91 6.10 85.63 0.52 2.43 16 6 C -0.20 -2.10 5.65 24.72 0.14 -1.96 16 7 C -0.13 -1.29 9.99 21.07 0.21 -1.08 16 8 C -0.03 -0.45 9.95 21.78 0.22 -0.23 16 9 C -0.33 -6.37 6.23 22.76 0.14 -6.23 16 10 C 0.43 12.07 7.01 26.42 0.19 12.25 16 11 O -0.46 -16.28 16.88 15.24 0.26 -16.02 16 12 C 0.00 0.05 5.24 71.24 0.37 0.42 16 13 O -0.35 -14.49 9.66 -45.04 -0.43 -14.93 16 14 C 0.47 22.45 7.25 71.24 0.52 22.97 16 15 O -0.53 -26.35 15.21 21.98 0.33 -26.02 16 16 C 0.05 2.59 2.74 -12.29 -0.03 2.55 16 17 H 0.05 2.69 8.14 -2.38 -0.02 2.67 16 18 C -0.12 -5.88 8.90 71.98 0.64 -5.24 16 19 C -0.54 -30.44 8.37 25.60 0.21 -30.23 16 20 H 0.06 3.57 6.76 -2.91 -0.02 3.55 16 21 C 0.02 1.10 5.30 84.66 0.45 1.54 16 22 N -0.91 -50.88 11.32 21.45 0.24 -50.64 16 23 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 27 S 0.27 3.75 22.37 -56.49 -1.26 2.48 16 28 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.42 1.50 8.46 -92.71 -0.78 0.71 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.16 2.37 8.02 -2.91 -0.02 2.35 16 36 H 0.12 3.10 8.13 -2.39 -0.02 3.08 16 37 H 0.11 3.10 8.13 -2.39 -0.02 3.08 16 38 H 0.04 1.89 8.11 -2.39 -0.02 1.88 16 39 H 0.08 4.14 6.07 -2.39 -0.01 4.12 16 40 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -75.60 376.97 3.82 -71.78 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 0.29 Total: 5.79 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 5.01 Total: 4.26 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -2.35 Total: -59.24 kcal Atomic # 8 Polarization: -70.78 SS G_CDS: 0.11 Total: -70.67 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.26 Total: 2.48 kcal Total: -75.60 3.82 -71.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649878599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.139 kcal (2) G-P(sol) polarization free energy of solvation -75.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds