Wall clock time and date at job start Tue Mar 31 2020 22:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34798 * 117.00020 * 2 1 4 4 O 1.21533 * 119.99885 * 359.97438 * 3 2 1 5 5 C 1.46951 * 119.99969 * 180.02562 * 3 2 1 6 6 C 1.33078 * 119.99817 * 171.39143 * 5 3 2 7 7 C 1.50699 * 120.00137 * 347.72565 * 6 5 3 8 8 H 1.08999 * 109.47327 * 340.21473 * 7 6 5 9 9 C 1.53003 * 109.46997 * 100.22330 * 7 6 5 10 10 N 1.46510 * 109.47072 * 220.21815 * 7 6 5 11 11 S 1.65598 * 119.99651 * 128.10975 * 10 7 6 12 12 O 1.42091 * 106.40484 * 307.37131 * 11 10 7 13 13 O 1.42105 * 106.40060 * 174.45161 * 11 10 7 14 14 C 1.76194 * 107.21734 * 60.91637 * 11 10 7 15 15 C 1.37645 * 120.13153 * 247.63468 * 14 11 10 16 16 C 1.38604 * 120.25375 * 180.31718 * 15 14 11 17 17 C 1.38660 * 120.49988 * 359.68008 * 16 15 14 18 18 C 1.37598 * 120.24973 * 359.97438 * 17 16 15 19 19 C 1.40701 * 120.13180 * 67.33012 * 14 11 10 20 20 C 1.41397 * 120.23905 * 359.97438 * 19 14 11 21 21 H 1.07995 * 119.99910 * 31.46659 * 20 19 14 22 22 C 1.39953 * 119.99838 * 211.45955 * 20 19 14 23 23 N 1.30817 * 119.99750 * 196.94914 * 22 20 19 24 24 Si 1.86793 * 119.99782 * 16.94947 * 22 20 19 25 25 H 1.48501 * 109.47046 * 268.59787 * 24 22 20 26 26 H 1.48499 * 109.47428 * 28.59991 * 24 22 20 27 27 H 1.48499 * 109.47077 * 148.60429 * 24 22 20 28 28 H 1.08995 * 109.47339 * 59.99803 * 1 2 3 29 29 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46850 * 300.00130 * 1 2 3 31 31 H 1.07995 * 119.99900 * 351.38220 * 5 3 2 32 32 H 1.08005 * 120.00116 * 167.73014 * 6 5 3 33 33 H 1.08993 * 109.47482 * 60.00064 * 9 7 6 34 34 H 1.09004 * 109.46879 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.46938 * 299.99489 * 9 7 6 36 36 H 0.96998 * 119.99835 * 308.11592 * 10 7 6 37 37 H 1.08004 * 119.87314 * 0.02562 * 15 14 11 38 38 H 1.07996 * 119.75379 * 179.69301 * 16 15 14 39 39 H 1.08006 * 119.87779 * 180.02562 * 17 16 15 40 40 H 1.07993 * 120.13183 * 180.02562 * 18 17 16 41 41 H 0.96998 * 119.99756 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4021 2.2203 -0.0005 5 6 3.5315 1.2780 -0.0006 6 6 4.1363 2.4508 -0.1731 7 6 3.3448 3.6452 -0.6400 8 1 2.4218 3.3078 -1.1113 9 6 3.0098 4.5352 0.5587 10 7 4.1370 4.4078 -1.6081 11 16 3.4886 4.8041 -3.0794 12 8 3.0086 3.5926 -3.6458 13 8 4.4390 5.6407 -3.7245 14 6 2.0718 5.8056 -2.7723 15 6 0.8133 5.3299 -3.0629 16 6 -0.3025 6.1180 -2.8284 17 6 -0.1659 7.3899 -2.2933 18 6 1.0819 7.8833 -1.9884 19 6 2.2220 7.0922 -2.2230 20 6 3.5093 7.5887 -1.9139 21 1 4.3612 7.2849 -2.5040 22 6 3.6794 8.4740 -0.8433 23 7 4.7724 9.1868 -0.7514 24 14 2.3456 8.6375 0.4542 25 1 1.4093 9.7233 0.0674 26 1 1.6011 7.3572 0.5630 27 1 2.9661 8.9622 1.7637 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.1192 0.3827 0.1392 32 1 5.1943 2.5466 0.0214 33 1 3.9329 4.8726 1.0299 34 1 2.4370 5.3989 0.2210 35 1 2.4204 3.9678 1.2789 36 1 5.0413 4.6805 -1.3873 37 1 0.6951 4.3405 -3.4797 38 1 -1.2858 5.7386 -3.0641 39 1 -1.0422 7.9952 -2.1143 40 1 1.1860 8.8739 -1.5713 41 1 4.8901 9.8006 -0.0096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657443903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:37 Heat of formation + Delta-G solvation = -116.824766 kcal Electronic energy + Delta-G solvation = -28646.284598 eV Core-core repulsion = 24618.935935 eV Total energy + Delta-G solvation = -4027.348662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.42552 -37.86630 -37.37308 -36.30541 -35.73320 -34.92966 -33.84032 -32.48376 -30.69920 -30.09073 -29.07584 -27.79667 -25.38993 -24.12279 -22.04852 -21.87377 -21.16852 -19.88320 -18.64118 -17.79727 -17.72031 -17.04348 -16.75020 -16.30364 -16.05841 -15.42775 -15.20452 -14.57549 -14.21963 -13.88505 -13.77349 -13.53603 -13.38889 -13.33507 -12.99328 -12.86778 -12.73351 -12.41169 -12.07070 -11.88385 -11.76020 -11.34169 -11.29715 -11.21488 -11.18898 -10.99179 -10.92026 -10.70191 -10.61388 -10.38107 -10.02146 -9.90925 -9.67683 -9.44131 -9.31583 -8.91777 -8.22770 -7.81189 -7.19173 -4.86112 1.06647 1.50629 2.09031 2.54191 2.77766 2.93504 2.94964 3.02970 3.13914 3.76339 3.88043 4.25517 4.64420 4.71636 4.82427 5.06420 5.12328 5.15914 5.27547 5.46262 5.49133 5.50571 5.67895 5.79388 5.86965 5.95107 6.03274 6.07331 6.21501 6.24422 6.42163 6.45669 6.63852 6.69506 6.77805 6.97098 7.11346 7.26636 7.45217 7.56514 7.60775 7.80611 7.85595 8.19952 8.34790 8.55653 9.78869 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.005025 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.086345 B = 5570.763861 C = 5610.552048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.486 3.514 4 O -0.493 6.493 5 C -0.203 4.203 6 C -0.039 4.039 7 C 0.161 3.839 8 H 0.124 0.876 9 C -0.155 4.155 10 N -1.111 6.111 11 S 2.705 3.295 12 O -0.996 6.996 13 O -0.967 6.967 14 C -0.769 4.769 15 C 0.021 3.979 16 C -0.258 4.258 17 C -0.042 4.042 18 C -0.238 4.238 19 C 0.168 3.832 20 C -0.458 4.458 21 H 0.131 0.869 22 C 0.092 3.908 23 N -0.778 5.778 24 Si 0.901 3.099 25 H -0.266 1.266 26 H -0.237 1.237 27 H -0.286 1.286 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.413 0.587 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.001 -12.177 6.379 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.333 3.667 4 O -0.382 6.382 5 C -0.222 4.222 6 C -0.059 4.059 7 C 0.055 3.945 8 H 0.141 0.859 9 C -0.214 4.214 10 N -0.866 5.866 11 S 2.802 3.198 12 O -0.986 6.986 13 O -0.957 6.957 14 C -0.863 4.863 15 C 0.001 3.999 16 C -0.278 4.278 17 C -0.061 4.061 18 C -0.257 4.257 19 C 0.163 3.837 20 C -0.484 4.484 21 H 0.149 0.851 22 C -0.131 4.131 23 N -0.400 5.400 24 Si 0.727 3.273 25 H -0.192 1.192 26 H -0.160 1.160 27 H -0.213 1.213 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.246 0.754 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.826 -12.048 5.612 13.588 hybrid contribution -0.841 0.896 1.202 1.719 sum -3.666 -11.152 6.814 13.573 Atomic orbital electron populations 1.23248 0.76372 1.03394 1.02813 1.86572 1.23368 1.33115 1.84617 1.21723 0.90251 0.81371 0.73385 1.90866 1.67254 1.35220 1.44894 1.21870 0.89994 0.99480 1.10905 1.24327 1.00955 0.93466 0.87189 1.20312 0.93766 0.88799 0.91659 0.85917 1.22122 1.01903 1.00318 0.97027 1.55682 1.25843 1.69843 1.35261 1.00974 0.74041 0.72933 0.71888 1.93461 1.82462 1.46615 1.76059 1.93524 1.61714 1.67951 1.72541 1.29783 1.14078 1.10371 1.32090 1.20374 0.91555 0.96986 0.91007 1.20480 0.97005 0.96874 1.13429 1.20842 0.96140 0.94780 0.94342 1.21282 0.93271 1.00053 1.11110 1.17056 0.92960 0.88051 0.85655 1.20397 0.95480 1.20443 1.12117 0.85149 1.26214 0.96295 0.91606 0.98985 1.69685 1.26115 1.15494 1.28675 0.86524 0.80758 0.81637 0.78375 1.19233 1.16043 1.21266 0.91608 0.88363 0.91928 0.83817 0.84042 0.92471 0.90331 0.91741 0.75407 0.87054 0.88194 0.88352 0.87489 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.36 -4.49 10.58 -40.76 -0.43 -4.92 16 3 C 0.49 6.87 7.67 34.26 0.26 7.13 16 4 O -0.49 -8.25 11.99 -19.29 -0.23 -8.48 16 5 C -0.20 -2.38 10.14 -37.85 -0.38 -2.77 16 6 C -0.04 -0.48 9.16 -36.10 -0.33 -0.82 16 7 C 0.16 2.66 2.38 -69.08 -0.16 2.49 16 8 H 0.12 2.29 4.98 -51.93 -0.26 2.03 16 9 C -0.16 -2.57 9.15 37.16 0.34 -2.23 16 10 N -1.11 -19.75 5.37 -5.88 -0.03 -19.78 16 11 S 2.70 58.97 5.00 -107.50 -0.54 58.43 16 12 O -1.00 -22.53 16.62 -57.17 -0.95 -23.48 16 13 O -0.97 -23.74 15.51 -57.17 -0.89 -24.63 16 14 C -0.77 -17.92 5.86 -38.87 -0.23 -18.15 16 15 C 0.02 0.45 9.53 -39.66 -0.38 0.08 16 16 C -0.26 -5.36 10.05 -39.29 -0.39 -5.75 16 17 C -0.04 -0.89 10.02 -39.66 -0.40 -1.29 16 18 C -0.24 -5.54 7.25 -38.87 -0.28 -5.82 16 19 C 0.17 4.12 5.06 -106.82 -0.54 3.58 16 20 C -0.46 -11.64 8.78 -37.74 -0.33 -11.97 16 21 H 0.13 3.57 5.57 -52.49 -0.29 3.27 16 22 C 0.09 2.24 5.41 -17.34 -0.09 2.15 16 23 N -0.78 -19.18 13.93 55.55 0.77 -18.40 16 24 Si 0.90 19.16 24.47 -169.99 -4.16 15.00 16 25 H -0.27 -5.57 6.55 56.52 0.37 -5.20 16 26 H -0.24 -5.09 6.12 56.52 0.35 -4.74 16 27 H -0.29 -5.80 7.11 56.52 0.40 -5.40 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.52 7.13 -51.93 -0.37 1.15 16 35 H 0.06 1.00 7.21 -51.93 -0.37 0.62 16 36 H 0.41 6.41 8.96 -34.47 -0.31 6.10 16 37 H 0.11 2.28 7.33 -52.48 -0.38 1.90 16 38 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.10 1.76 8.06 -52.48 -0.42 1.33 16 40 H 0.11 2.44 4.79 -52.49 -0.25 2.19 16 41 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -31.63 353.35 -7.83 -39.45 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -4.84 Total: 13.43 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: -1.85 Total: -31.95 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.74 Total: -38.18 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -2.50 Total: -61.51 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.16 Total: 15.00 kcal Atomic # 16 Polarization: 58.97 SS G_CDS: -0.54 Total: 58.43 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.63 -7.83 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657443903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.370 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds