Wall clock time and date at job start Tue Mar 31 2020 22:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.46472 * 120.38572 * 2 1 4 4 C 1.39409 * 122.09133 * 0.04492 * 3 2 1 5 5 C 1.37906 * 119.49229 * 179.97438 * 4 3 2 6 6 C 1.38778 * 120.70848 * 0.02562 * 5 4 3 7 7 C 1.37984 * 120.74058 * 359.97148 * 6 5 4 8 8 C 1.39169 * 119.53786 * 0.05109 * 7 6 5 9 9 C 1.47030 * 122.06736 * 179.97438 * 8 7 6 10 10 O 1.21638 * 120.34002 * 359.95690 * 9 8 7 11 11 O 1.34407 * 119.32092 * 179.70766 * 9 8 7 12 12 C 1.34727 * 122.60646 * 0.51877 * 11 9 8 13 13 C 1.47291 * 118.73692 * 179.74268 * 12 11 9 14 14 O 1.21646 * 119.99638 * 172.97971 * 13 12 11 15 15 N 1.34774 * 119.99743 * 352.98693 * 13 12 11 16 16 C 1.40471 * 119.99615 * 179.97438 * 15 13 12 17 17 C 1.40683 * 126.08812 * 0.02562 * 16 15 13 18 18 N 1.30893 * 108.38223 * 179.97438 * 17 16 15 19 19 N 1.40063 * 108.42169 * 0.02562 * 18 17 16 20 20 C 1.37309 * 126.07021 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00707 * 179.97438 * 20 19 18 22 22 C 1.38993 * 119.99722 * 359.97438 * 20 19 18 23 23 N 1.31292 * 120.00041 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00035 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47245 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47198 * 120.00378 * 24 22 20 27 27 H 1.48500 * 109.47416 * 240.00351 * 24 22 20 28 28 C 1.35715 * 126.08585 * 179.71038 * 16 15 13 29 29 H 1.08999 * 109.47178 * 262.65314 * 1 2 3 30 30 H 1.08999 * 109.47232 * 22.65720 * 1 2 3 31 31 H 1.09000 * 109.46908 * 142.65429 * 1 2 3 32 32 H 1.08004 * 120.25717 * 359.95699 * 4 3 2 33 33 H 1.08005 * 119.64702 * 179.97438 * 5 4 3 34 34 H 1.08005 * 119.62596 * 180.02562 * 6 5 4 35 35 H 1.07997 * 120.23096 * 180.02562 * 7 6 5 36 36 H 0.96996 * 120.00042 * 359.97438 * 15 13 12 37 37 H 1.07999 * 125.81175 * 359.94493 * 17 16 15 38 38 H 0.97004 * 119.99859 * 179.97438 * 23 22 20 39 39 H 1.07997 * 126.24829 * 0.03428 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2479 1.2635 0.0000 4 6 1.6037 2.4998 0.0009 5 6 2.3545 3.6566 0.0014 6 6 3.7412 3.6015 0.0005 7 6 4.3988 2.3885 -0.0004 8 6 3.6614 1.2082 -0.0014 9 6 4.3044 -0.1140 -0.0029 10 8 5.5172 -0.2074 -0.0041 11 8 3.5384 -1.2184 0.0022 12 6 2.1921 -1.1682 -0.0016 13 6 1.4363 -2.4324 -0.0013 14 8 0.2264 -2.4176 0.1241 15 7 2.0852 -3.6055 -0.1398 16 6 1.3645 -4.8112 -0.1390 17 6 -0.0296 -4.9431 -0.0037 18 7 -0.3302 -6.2162 -0.0507 19 7 0.8544 -6.9449 -0.2165 20 6 0.9567 -8.3109 -0.3110 21 1 1.9248 -8.7724 -0.4387 22 6 -0.1856 -9.0998 -0.2422 23 7 -1.3625 -8.5388 -0.0875 24 14 -0.0464 -10.9581 -0.3714 25 1 1.3792 -11.3372 -0.5409 26 1 -0.5802 -11.5817 0.8661 27 1 -0.8278 -11.4329 -1.5416 28 6 1.8884 -6.0558 -0.2745 29 1 -0.3633 -0.1314 1.0192 30 1 -0.3633 0.9483 -0.3959 31 1 -0.3633 -0.8170 -0.6234 32 1 0.5249 2.5514 0.0010 33 1 1.8580 4.6158 0.0017 34 1 4.3120 4.5184 0.0013 35 1 5.4783 2.3552 -0.0007 36 1 3.0499 -3.6172 -0.2401 37 1 -0.7322 -4.1321 0.1187 38 1 -2.1597 -9.0893 -0.0399 39 1 2.9330 -6.2985 -0.4019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544158564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:52 Heat of formation + Delta-G solvation = 10.918900 kcal Electronic energy + Delta-G solvation = -27745.036649 eV Core-core repulsion = 23620.076168 eV Total energy + Delta-G solvation = -4124.960481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.99883 -41.74486 -40.50524 -39.79357 -38.97859 -36.37812 -35.32252 -34.89163 -32.54747 -32.31392 -31.49434 -30.00437 -28.55190 -26.83800 -25.94727 -25.26984 -23.29406 -22.77817 -22.44185 -21.31191 -20.36208 -19.84095 -19.13987 -18.47799 -18.06675 -17.56860 -17.38244 -16.96345 -16.29958 -16.18554 -15.96038 -15.65447 -15.54364 -15.31108 -15.21645 -14.90831 -14.63934 -14.36450 -14.13196 -13.77311 -13.53957 -13.50129 -13.40542 -13.17048 -12.94438 -12.93277 -12.73983 -12.24888 -12.03559 -11.93448 -11.68536 -11.08714 -10.93520 -10.86588 -10.59337 -10.25151 -10.12861 -9.33968 -8.56788 -8.48876 -6.25701 -0.88172 -0.40490 0.62182 1.00572 1.15087 1.32055 1.40075 1.58947 1.66536 1.89664 1.93300 2.18817 2.49929 2.69208 2.71973 2.85395 3.07323 3.30110 3.47704 3.67296 3.79198 4.17132 4.18560 4.26679 4.40303 4.40952 4.54290 4.59174 4.78016 4.84928 4.97589 4.98433 5.00668 5.05239 5.20071 5.27993 5.29310 5.32725 5.53057 5.73921 5.87043 5.93345 6.10406 6.27214 6.55326 6.69841 7.09366 7.41814 7.64235 8.50633 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030230 B = 0.002300 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.995924 B =12170.656537 C =13075.017346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.064 4.064 3 C -0.028 4.028 4 C -0.103 4.103 5 C -0.067 4.067 6 C -0.112 4.112 7 C -0.056 4.056 8 C -0.190 4.190 9 C 0.519 3.481 10 O -0.484 6.484 11 O -0.280 6.280 12 C 0.016 3.984 13 C 0.557 3.443 14 O -0.525 6.525 15 N -0.603 5.603 16 C -0.051 4.051 17 C -0.048 4.048 18 N -0.307 5.307 19 N -0.165 5.165 20 C -0.353 4.353 21 H 0.139 0.861 22 C -0.006 4.006 23 N -0.821 5.821 24 Si 1.019 2.981 25 H -0.243 1.243 26 H -0.272 1.272 27 H -0.271 1.271 28 C -0.080 4.080 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.167 0.833 33 H 0.176 0.824 34 H 0.171 0.829 35 H 0.145 0.855 36 H 0.417 0.583 37 H 0.179 0.821 38 H 0.278 0.722 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.464 24.629 -0.474 25.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.067 4.067 3 C -0.029 4.029 4 C -0.121 4.121 5 C -0.085 4.085 6 C -0.129 4.129 7 C -0.074 4.074 8 C -0.192 4.192 9 C 0.368 3.632 10 O -0.373 6.373 11 O -0.192 6.192 12 C -0.031 4.031 13 C 0.345 3.655 14 O -0.405 6.405 15 N -0.245 5.245 16 C -0.157 4.157 17 C -0.223 4.223 18 N -0.138 5.138 19 N 0.067 4.933 20 C -0.484 4.484 21 H 0.157 0.843 22 C -0.217 4.217 23 N -0.449 5.449 24 Si 0.838 3.162 25 H -0.166 1.166 26 H -0.197 1.197 27 H -0.196 1.196 28 C -0.231 4.231 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.185 0.815 33 H 0.194 0.806 34 H 0.188 0.812 35 H 0.162 0.838 36 H 0.254 0.746 37 H 0.196 0.804 38 H 0.087 0.913 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.132 23.465 -0.319 24.255 hybrid contribution 1.238 -0.513 -0.058 1.341 sum 7.370 22.953 -0.377 24.110 Atomic orbital electron populations 1.21099 0.86317 1.04689 1.04375 1.21328 0.98828 0.89538 0.96984 1.19038 0.90988 0.93859 0.98980 1.21645 1.02312 0.89711 0.98409 1.21959 0.93818 0.99753 0.92958 1.21788 0.95329 0.97927 0.97870 1.21335 1.01099 0.90597 0.94403 1.20261 0.94248 0.93264 1.11388 1.20825 0.85811 0.83016 0.73564 1.90897 1.12004 1.86163 1.48242 1.83219 1.18097 1.39957 1.77929 1.20758 0.78505 0.94756 1.09069 1.17444 0.86597 0.82134 0.79307 1.90710 1.13056 1.85240 1.51461 1.42355 1.10607 1.02902 1.68651 1.17285 0.91388 0.85093 1.21900 1.24262 0.94550 0.95149 1.08357 1.78146 1.06249 1.02567 1.26868 1.44840 1.03106 1.05810 1.39582 1.20652 0.97549 0.77139 1.53050 0.84347 1.26867 0.93745 1.06975 0.94158 1.70383 0.99199 1.38626 1.36652 0.84533 0.80220 0.73149 0.78292 1.16589 1.19672 1.19627 1.21962 0.95242 0.88223 1.17655 0.89684 0.88370 0.89614 0.81541 0.80613 0.81163 0.83755 0.74584 0.80410 0.91251 0.79980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 8.32 71.24 0.59 -1.72 16 2 C -0.06 -1.52 6.05 -18.37 -0.11 -1.64 16 3 C -0.03 -0.55 5.89 -20.06 -0.12 -0.66 16 4 C -0.10 -1.16 9.44 22.47 0.21 -0.94 16 5 C -0.07 -0.44 10.01 22.32 0.22 -0.22 16 6 C -0.11 -0.91 10.02 22.34 0.22 -0.69 16 7 C -0.06 -0.87 9.66 22.43 0.22 -0.66 16 8 C -0.19 -4.16 5.90 -19.96 -0.12 -4.27 16 9 C 0.52 14.89 8.19 70.13 0.57 15.46 16 10 O -0.48 -15.81 17.39 19.39 0.34 -15.47 16 11 O -0.28 -8.46 9.00 15.86 0.14 -8.32 16 12 C 0.02 0.46 6.86 24.00 0.16 0.63 16 13 C 0.56 19.98 7.65 86.62 0.66 20.65 16 14 O -0.52 -20.64 10.17 -4.18 -0.04 -20.68 16 15 N -0.60 -22.72 5.45 -306.99 -1.67 -24.40 16 16 C -0.05 -2.36 6.90 37.77 0.26 -2.10 16 17 C -0.05 -2.54 10.85 85.43 0.93 -1.61 16 18 N -0.31 -18.27 10.39 -56.45 -0.59 -18.85 16 19 N -0.17 -9.22 3.74 -190.00 -0.71 -9.93 16 20 C -0.35 -18.79 10.25 84.02 0.86 -17.93 16 21 H 0.14 6.47 7.83 -2.91 -0.02 6.44 16 22 C -0.01 -0.29 5.50 84.95 0.47 0.18 16 23 N -0.82 -46.99 11.81 21.66 0.26 -46.73 16 24 Si 1.02 38.68 29.55 68.60 2.03 40.71 16 25 H -0.24 -8.35 7.11 99.48 0.71 -7.64 16 26 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 27 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 28 C -0.08 -3.82 11.49 83.38 0.96 -2.86 16 29 H 0.08 1.83 8.13 -2.39 -0.02 1.81 16 30 H 0.10 1.29 6.32 -2.39 -0.02 1.28 16 31 H 0.09 2.33 5.75 -2.39 -0.01 2.32 16 32 H 0.17 1.03 6.45 -2.91 -0.02 1.01 16 33 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 34 H 0.17 0.24 8.06 -2.91 -0.02 0.21 16 35 H 0.14 2.11 7.80 -2.91 -0.02 2.09 16 36 H 0.42 13.48 8.18 -92.71 -0.76 12.73 16 37 H 0.18 9.15 5.91 -2.91 -0.02 9.13 16 38 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 39 H 0.18 7.08 8.06 -2.91 -0.02 7.06 16 Total: -1.00 -76.99 340.65 6.14 -70.85 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.39 Total: 31.21 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 6.00 Total: 1.62 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -2.71 Total: -99.91 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: 0.44 Total: -44.47 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -76.99 6.14 -70.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544158564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.764 kcal (2) G-P(sol) polarization free energy of solvation -76.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds