Wall clock time and date at job start Tue Mar 31 2020 22:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 O 1.20830 * 119.99594 * 120.00100 * 4 2 1 6 6 O 1.34222 * 120.00024 * 299.72383 * 4 2 1 7 7 C 1.45201 * 116.99867 * 180.02562 * 6 4 2 8 8 C 1.50695 * 109.47187 * 180.02562 * 7 6 4 9 9 O 1.21276 * 120.00334 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00023 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99930 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.46844 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00115 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99684 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99915 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00046 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46995 * 89.99900 * 16 14 12 18 18 H 1.48508 * 109.47110 * 209.99777 * 16 14 12 19 19 H 1.48497 * 109.47125 * 329.99835 * 16 14 12 20 20 C 1.50696 * 109.47197 * 239.99434 * 2 1 3 21 21 C 1.38242 * 119.98733 * 359.72963 * 20 2 1 22 22 C 1.38210 * 120.01218 * 179.72403 * 21 20 2 23 23 C 1.38356 * 119.98687 * 0.54822 * 22 21 20 24 24 Cl 1.73601 * 120.01294 * 179.70528 * 23 22 21 25 25 C 1.38343 * 119.97259 * 359.72633 * 23 22 21 26 26 C 1.38217 * 119.98775 * 359.97438 * 25 23 22 27 27 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 28 28 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 29 29 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 32 32 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 33 33 H 1.09009 * 109.46864 * 300.00062 * 7 6 4 34 34 H 1.09001 * 109.47271 * 60.00074 * 7 6 4 35 35 H 0.96997 * 120.00313 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.46986 * 300.00066 * 11 10 8 37 37 H 1.08997 * 109.47325 * 60.00538 * 11 10 8 38 38 H 0.96996 * 119.99582 * 180.02562 * 15 14 12 39 39 H 1.08005 * 119.99332 * 0.02562 * 21 20 2 40 40 H 1.08005 * 120.00530 * 180.27450 * 22 21 20 41 41 H 1.08004 * 120.00552 * 179.97438 * 25 23 22 42 42 H 1.08002 * 119.98917 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7269 -1.6928 1.1198 6 8 1.7125 -0.2484 2.4496 7 6 2.2318 -0.9825 3.5897 8 6 1.7722 -0.3221 4.8639 9 8 1.0760 0.6698 4.8160 10 7 2.1348 -0.8338 6.0569 11 6 1.6885 -0.1914 7.2957 12 6 2.2273 -0.9534 8.4790 13 1 2.8405 -1.8287 8.3238 14 6 1.9375 -0.5329 9.7597 15 7 2.4073 -1.1981 10.7924 16 14 0.8762 0.9808 10.0280 17 1 -0.5510 0.5776 10.1038 18 1 1.2714 1.6438 11.2968 19 1 1.0647 1.9243 8.8969 20 6 2.0323 -0.7105 -1.2304 21 6 1.1338 -1.2408 -2.1373 22 6 1.5939 -1.8875 -3.2688 23 6 2.9541 -2.0141 -3.4879 24 17 3.5328 -2.8331 -4.9050 25 6 3.8528 -1.4882 -2.5771 26 6 3.3915 -0.8363 -1.4491 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.8641 -2.0082 3.5595 34 1 3.3212 -0.9857 3.5543 35 1 2.6919 -1.6268 6.0954 36 1 2.0564 0.8341 7.3262 37 1 0.5991 -0.1878 7.3310 38 1 2.2030 -0.9024 11.6933 39 1 0.0720 -1.1454 -1.9641 40 1 0.8918 -2.2979 -3.9795 41 1 4.9147 -1.5871 -2.7474 42 1 4.0931 -0.4261 -0.7378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056292117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:54 Heat of formation + Delta-G solvation = -108.889594 kcal Electronic energy + Delta-G solvation = -26068.317559 eV Core-core repulsion = 22039.269285 eV Total energy + Delta-G solvation = -4029.048274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30226 -39.76049 -38.84939 -37.11806 -36.42362 -35.58948 -34.41545 -32.46463 -31.61775 -30.16126 -29.43042 -27.84969 -27.23931 -24.62328 -23.05482 -22.78586 -21.99163 -20.18012 -20.05061 -17.97867 -17.56348 -17.44555 -16.78687 -16.66357 -15.90819 -15.68886 -15.39913 -15.05803 -14.81257 -14.70070 -14.24312 -13.98406 -13.82017 -13.51673 -13.45169 -12.92027 -12.90071 -12.73842 -12.43162 -12.35550 -12.29867 -12.11241 -12.10034 -11.81284 -11.51502 -11.38629 -11.10321 -11.08338 -10.87466 -10.77869 -10.50614 -10.03127 -9.57635 -9.40437 -9.39209 -9.00139 -8.84851 -8.31222 -6.26913 -4.30233 0.67284 0.92455 1.75196 1.97846 2.26220 2.97896 3.22716 3.24578 3.30064 3.37242 3.79463 3.96608 4.24553 4.28189 4.47082 4.50865 4.56829 4.59793 4.91475 4.99342 5.03305 5.07289 5.11821 5.17566 5.24031 5.25253 5.32776 5.37874 5.42496 5.53762 5.70435 5.77808 5.85198 5.89421 6.09867 6.19929 6.38113 6.69180 6.97167 7.04878 7.28259 7.52904 8.01084 8.37564 8.64027 8.76015 9.31943 10.84826 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029843 B = 0.001870 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.004695 B =14970.050981 C =15506.697657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.009 4.009 3 C -0.142 4.142 4 C 0.468 3.532 5 O -0.499 6.499 6 O -0.324 6.324 7 C 0.048 3.952 8 C 0.502 3.498 9 O -0.536 6.536 10 N -0.699 5.699 11 C 0.222 3.778 12 C -0.547 4.547 13 H 0.081 0.919 14 C 0.078 3.922 15 N -0.890 5.890 16 Si 0.877 3.123 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.067 4.067 21 C -0.097 4.097 22 C -0.113 4.113 23 C -0.031 4.031 24 Cl -0.074 7.074 25 C -0.110 4.110 26 C -0.074 4.074 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.399 0.601 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.268 0.732 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 0.726 -30.530 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 C -0.199 4.199 4 C 0.310 3.690 5 O -0.386 6.386 6 O -0.238 6.238 7 C -0.030 4.030 8 C 0.286 3.714 9 O -0.414 6.414 10 N -0.350 5.350 11 C 0.101 3.899 12 C -0.585 4.585 13 H 0.099 0.901 14 C -0.126 4.126 15 N -0.527 5.527 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.185 1.185 20 C -0.067 4.067 21 C -0.115 4.115 22 C -0.131 4.131 23 C -0.058 4.058 24 Cl -0.045 7.045 25 C -0.129 4.129 26 C -0.092 4.092 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.233 0.767 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.750 1.065 -30.440 30.468 hybrid contribution 0.029 -0.080 0.329 0.340 sum -0.721 0.985 -30.111 30.136 Atomic orbital electron populations 1.22016 0.90740 1.03378 1.04427 1.19346 0.98319 0.96270 0.87133 1.21940 1.01756 0.91874 1.04334 1.23500 0.77713 0.82923 0.84869 1.90697 1.35239 1.25500 1.87198 1.86539 1.69103 1.54303 1.13886 1.22849 1.00550 0.96221 0.83338 1.19904 0.81767 0.85194 0.84580 1.90697 1.37844 1.25603 1.87234 1.46077 1.52131 1.31229 1.05538 1.19558 0.95427 0.94130 0.80809 1.21065 1.34279 1.14068 0.89070 0.90124 1.24793 0.95316 0.96851 0.95618 1.69878 1.44464 1.39679 0.98681 0.86813 0.81060 0.83439 0.78359 1.19782 1.20820 1.18477 1.19431 0.93721 0.98734 0.94807 1.21122 1.00307 0.96845 0.93275 1.21018 0.93543 1.00162 0.98419 1.20981 0.94126 1.00117 0.90571 1.98375 1.89135 1.77718 1.39257 1.21018 0.99821 0.98411 0.93651 1.20921 0.95025 0.97197 0.96033 0.89918 0.90380 0.91518 0.91756 0.90576 0.89931 0.88319 0.88305 0.76704 0.95413 0.95863 0.92165 0.84305 0.84766 0.84791 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 7.06 37.16 0.26 -0.85 16 2 C -0.01 -0.09 0.80 -156.81 -0.12 -0.21 16 3 C -0.14 -1.11 8.22 37.16 0.31 -0.80 16 4 C 0.47 5.79 6.42 36.01 0.23 6.02 16 5 O -0.50 -7.08 14.86 -18.75 -0.28 -7.36 16 6 O -0.32 -4.58 9.56 -45.88 -0.44 -5.02 16 7 C 0.05 0.67 5.94 36.00 0.21 0.88 16 8 C 0.50 9.23 7.91 -10.99 -0.09 9.14 16 9 O -0.54 -11.89 16.50 -14.10 -0.23 -12.12 16 10 N -0.70 -13.53 5.55 -61.47 -0.34 -13.87 16 11 C 0.22 5.29 4.50 -5.19 -0.02 5.27 16 12 C -0.55 -14.63 9.83 -34.44 -0.34 -14.97 16 13 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 14 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 15 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 16 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 20 C -0.07 -0.60 4.38 -104.62 -0.46 -1.06 16 21 C -0.10 -0.76 8.97 -39.59 -0.36 -1.11 16 22 C -0.11 -0.88 9.83 -39.55 -0.39 -1.26 16 23 C -0.03 -0.27 6.32 -39.50 -0.25 -0.52 16 24 Cl -0.07 -0.60 28.96 -51.86 -1.50 -2.10 16 25 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 26 C -0.07 -0.68 7.93 -39.59 -0.31 -0.99 16 27 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 28 H 0.08 0.41 7.52 -51.93 -0.39 0.02 16 29 H 0.07 0.49 7.50 -51.93 -0.39 0.10 16 30 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 33 H 0.10 1.22 8.14 -51.92 -0.42 0.79 16 34 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 35 H 0.40 6.67 8.32 -40.82 -0.34 6.33 16 36 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 37 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.14 0.78 5.89 -52.48 -0.31 0.48 16 40 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.13 1.14 7.52 -52.49 -0.39 0.75 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -32.98 372.84 -8.39 -41.37 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.51 Total: 2.16 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.81 Total: 0.26 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.43 Total: -39.08 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.95 Total: -24.50 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.98 -8.39 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056292117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.517 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds