Wall clock time and date at job start Tue Mar 31 2020 22:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 O 1.20830 * 119.99594 * 120.00100 * 4 2 1 6 6 O 1.34222 * 120.00024 * 299.72383 * 4 2 1 7 7 C 1.45201 * 116.99867 * 180.02562 * 6 4 2 8 8 C 1.50695 * 109.47187 * 180.02562 * 7 6 4 9 9 O 1.21276 * 120.00334 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00023 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99930 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.46844 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00115 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99684 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99915 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00046 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46995 * 89.99900 * 16 14 12 18 18 H 1.48508 * 109.47110 * 209.99777 * 16 14 12 19 19 H 1.48497 * 109.47125 * 329.99835 * 16 14 12 20 20 C 1.50696 * 109.47197 * 239.99434 * 2 1 3 21 21 C 1.38242 * 119.98733 * 359.72963 * 20 2 1 22 22 C 1.38210 * 120.01218 * 179.72403 * 21 20 2 23 23 C 1.38356 * 119.98687 * 0.54822 * 22 21 20 24 24 Cl 1.73601 * 120.01294 * 179.70528 * 23 22 21 25 25 C 1.38343 * 119.97259 * 359.72633 * 23 22 21 26 26 C 1.38217 * 119.98775 * 359.97438 * 25 23 22 27 27 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 28 28 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 29 29 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 32 32 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 33 33 H 1.09009 * 109.46864 * 300.00062 * 7 6 4 34 34 H 1.09001 * 109.47271 * 60.00074 * 7 6 4 35 35 H 0.96997 * 120.00313 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.46986 * 300.00066 * 11 10 8 37 37 H 1.08997 * 109.47325 * 60.00538 * 11 10 8 38 38 H 0.96996 * 119.99582 * 180.02562 * 15 14 12 39 39 H 1.08005 * 119.99332 * 0.02562 * 21 20 2 40 40 H 1.08005 * 120.00530 * 180.27450 * 22 21 20 41 41 H 1.08004 * 120.00552 * 179.97438 * 25 23 22 42 42 H 1.08002 * 119.98917 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7269 -1.6928 1.1198 6 8 1.7125 -0.2484 2.4496 7 6 2.2318 -0.9825 3.5897 8 6 1.7722 -0.3221 4.8639 9 8 1.0760 0.6698 4.8160 10 7 2.1348 -0.8338 6.0569 11 6 1.6885 -0.1914 7.2957 12 6 2.2273 -0.9534 8.4790 13 1 2.8405 -1.8287 8.3238 14 6 1.9375 -0.5329 9.7597 15 7 2.4073 -1.1981 10.7924 16 14 0.8762 0.9808 10.0280 17 1 -0.5510 0.5776 10.1038 18 1 1.2714 1.6438 11.2968 19 1 1.0647 1.9243 8.8969 20 6 2.0323 -0.7105 -1.2304 21 6 1.1338 -1.2408 -2.1373 22 6 1.5939 -1.8875 -3.2688 23 6 2.9541 -2.0141 -3.4879 24 17 3.5328 -2.8331 -4.9050 25 6 3.8528 -1.4882 -2.5771 26 6 3.3915 -0.8363 -1.4491 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.8641 -2.0082 3.5595 34 1 3.3212 -0.9857 3.5543 35 1 2.6919 -1.6268 6.0954 36 1 2.0564 0.8341 7.3262 37 1 0.5991 -0.1878 7.3310 38 1 2.2030 -0.9024 11.6933 39 1 0.0720 -1.1454 -1.9641 40 1 0.8918 -2.2979 -3.9795 41 1 4.9147 -1.5871 -2.7474 42 1 4.0931 -0.4261 -0.7378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056292117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:53 Heat of formation + Delta-G solvation = -127.894650 kcal Electronic energy + Delta-G solvation = -26069.141680 eV Core-core repulsion = 22039.269285 eV Total energy + Delta-G solvation = -4029.872395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.20592 -40.77557 -40.09758 -37.86506 -37.40219 -36.28152 -36.19854 -34.46537 -32.21888 -31.25412 -30.54206 -28.84635 -28.43231 -25.44054 -24.22731 -23.60736 -23.27649 -21.73593 -20.89816 -19.38401 -18.55985 -18.46088 -18.01421 -17.80071 -17.19964 -16.93029 -16.45398 -16.16100 -16.08854 -15.70977 -15.35287 -14.94779 -14.74407 -14.52855 -14.48320 -14.35661 -14.06675 -13.94623 -13.55531 -13.34715 -13.22489 -13.08320 -12.89809 -12.70763 -12.70604 -12.45099 -12.13822 -12.02964 -11.93438 -11.90723 -11.70845 -11.67592 -11.41249 -10.96560 -10.92508 -10.04669 -10.00886 -9.64056 -8.40226 -6.48106 0.02277 0.31784 1.03106 1.12519 1.23418 1.34057 1.37166 1.48046 1.51108 2.28136 2.40463 2.68101 2.95157 3.26896 3.55683 3.64340 3.75009 3.87523 3.93809 3.96095 4.03297 4.04217 4.33189 4.44311 4.64350 4.71713 4.72470 4.74937 4.78413 4.83598 4.95726 5.00293 5.10681 5.18605 5.20561 5.24210 5.25167 5.30263 5.39322 5.48880 5.77246 6.05060 6.50793 6.54859 6.71543 7.10881 7.26256 8.74309 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029843 B = 0.001870 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.004695 B =14970.050981 C =15506.697657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.006 4.006 3 C -0.140 4.140 4 C 0.468 3.532 5 O -0.520 6.520 6 O -0.337 6.337 7 C 0.056 3.944 8 C 0.506 3.494 9 O -0.575 6.575 10 N -0.698 5.698 11 C 0.233 3.767 12 C -0.549 4.549 13 H 0.060 0.940 14 C 0.026 3.974 15 N -0.931 5.931 16 Si 0.938 3.062 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.076 4.076 21 C -0.096 4.096 22 C -0.115 4.115 23 C -0.042 4.042 24 Cl -0.073 7.073 25 C -0.119 4.119 26 C -0.086 4.086 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.412 0.588 36 H 0.018 0.982 37 H 0.017 0.983 38 H 0.273 0.727 39 H 0.162 0.838 40 H 0.153 0.847 41 H 0.142 0.858 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.505 1.212 -32.437 32.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.007 4.007 3 C -0.197 4.197 4 C 0.312 3.688 5 O -0.408 6.408 6 O -0.253 6.253 7 C -0.021 4.021 8 C 0.292 3.708 9 O -0.455 6.455 10 N -0.350 5.350 11 C 0.109 3.891 12 C -0.587 4.587 13 H 0.079 0.921 14 C -0.175 4.175 15 N -0.569 5.569 16 Si 0.762 3.238 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.182 1.182 20 C -0.076 4.076 21 C -0.114 4.114 22 C -0.133 4.133 23 C -0.068 4.068 24 Cl -0.044 7.044 25 C -0.138 4.138 26 C -0.104 4.104 27 H 0.090 0.910 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.248 0.752 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.082 0.918 39 H 0.180 0.820 40 H 0.171 0.829 41 H 0.160 0.840 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.719 1.529 -32.372 32.454 hybrid contribution 0.390 -0.301 0.853 0.985 sum -1.329 1.228 -31.520 31.571 Atomic orbital electron populations 1.22064 0.89359 1.03818 1.05253 1.19455 0.99336 0.96428 0.85451 1.21954 1.01764 0.91150 1.04857 1.24205 0.77069 0.82718 0.84849 1.90685 1.36241 1.26547 1.87292 1.86546 1.69485 1.54751 1.14489 1.22726 1.01680 0.96299 0.81378 1.20521 0.80487 0.84428 0.85382 1.90676 1.39518 1.27408 1.87864 1.45878 1.52523 1.31668 1.04882 1.19173 0.94780 0.93433 0.81677 1.21281 1.33601 1.13553 0.90295 0.92144 1.25615 0.96614 0.99744 0.95489 1.69985 1.46101 1.41534 0.99296 0.85846 0.79590 0.79927 0.78476 1.18932 1.19954 1.18178 1.19508 0.93849 0.99290 0.95003 1.21388 1.01296 0.95971 0.92725 1.21293 0.93520 0.99730 0.98752 1.21146 0.94677 1.00314 0.90666 1.98374 1.89202 1.77695 1.39157 1.21155 1.00461 0.98482 0.93664 1.21001 0.95396 0.97737 0.96309 0.91048 0.87628 0.91265 0.91854 0.88439 0.90953 0.86209 0.86134 0.75178 0.96408 0.96505 0.91825 0.82044 0.82901 0.84018 0.85534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 7.06 71.98 0.51 -1.38 16 2 C -0.01 -0.09 0.80 -53.67 -0.04 -0.14 16 3 C -0.14 -1.97 8.22 71.98 0.59 -1.38 16 4 C 0.47 10.97 6.42 71.24 0.46 11.43 16 5 O -0.52 -14.09 14.86 21.95 0.33 -13.76 16 6 O -0.34 -9.15 9.56 -44.98 -0.43 -9.58 16 7 C 0.06 1.48 5.94 71.23 0.42 1.90 16 8 C 0.51 18.14 7.91 87.66 0.69 18.83 16 9 O -0.57 -25.23 16.50 15.78 0.26 -24.97 16 10 N -0.70 -26.57 5.55 -466.78 -2.59 -29.16 16 11 C 0.23 11.00 4.50 85.63 0.38 11.39 16 12 C -0.55 -29.59 9.83 25.60 0.25 -29.34 16 13 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 14 C 0.03 1.43 5.47 84.65 0.46 1.90 16 15 N -0.93 -54.81 13.96 21.45 0.30 -54.51 16 16 Si 0.94 42.99 27.47 68.60 1.88 44.87 16 17 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.26 -11.60 6.54 99.48 0.65 -10.95 16 20 C -0.08 -1.23 4.38 -19.86 -0.09 -1.32 16 21 C -0.10 -1.24 8.97 22.26 0.20 -1.04 16 22 C -0.11 -1.52 9.83 22.29 0.22 -1.30 16 23 C -0.04 -0.65 6.32 22.32 0.14 -0.51 16 24 Cl -0.07 -1.10 28.96 -2.72 -0.08 -1.18 16 25 C -0.12 -1.95 9.83 22.29 0.22 -1.73 16 26 C -0.09 -1.50 7.93 22.26 0.18 -1.33 16 27 H 0.07 1.10 8.12 -2.38 -0.02 1.08 16 28 H 0.11 0.75 7.52 -2.39 -0.02 0.73 16 29 H 0.07 0.85 7.50 -2.39 -0.02 0.83 16 30 H 0.06 0.89 7.39 -2.39 -0.02 0.87 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 1.18 8.11 -2.39 -0.02 1.16 16 33 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 34 H 0.12 2.69 8.13 -2.39 -0.02 2.67 16 35 H 0.41 13.47 8.32 -92.71 -0.77 12.70 16 36 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 37 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 38 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.16 1.27 5.89 -2.91 -0.02 1.25 16 40 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.13 2.18 7.52 -2.91 -0.02 2.16 16 Total: -1.00 -70.57 372.84 4.50 -66.07 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.23 Total: 16.24 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 4.60 Total: 5.98 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.29 Total: -83.67 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: 0.16 Total: -48.31 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.87 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -70.57 4.50 -66.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056292117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.826 kcal (2) G-P(sol) polarization free energy of solvation -70.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds