Wall clock time and date at job start Tue Mar 31 2020 22:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30502 * 125.64996 * 2 1 4 4 C 1.34128 * 109.25609 * 180.29462 * 3 2 1 5 5 S 1.76198 * 125.99294 * 179.72726 * 4 3 2 6 6 O 1.42100 * 106.40416 * 83.53218 * 5 4 3 7 7 O 1.42095 * 106.40701 * 216.45902 * 5 4 3 8 8 N 1.65606 * 107.21664 * 329.99489 * 5 4 3 9 9 C 1.46499 * 120.00083 * 270.00081 * 8 5 4 10 10 C 1.50704 * 109.46884 * 94.99806 * 9 8 5 11 11 H 1.07992 * 120.00273 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99631 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99939 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00165 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.46913 * 90.00342 * 14 12 10 16 16 H 1.48494 * 109.47438 * 210.00068 * 14 12 10 17 17 H 1.48493 * 109.47396 * 330.00447 * 14 12 10 18 18 C 1.46504 * 120.00037 * 90.00002 * 8 5 4 19 19 C 1.50695 * 109.47330 * 94.99998 * 18 8 5 20 20 C 1.34520 * 125.78977 * 89.71202 * 19 18 8 21 21 C 1.41384 * 106.83858 * 179.89226 * 20 19 18 22 22 C 1.34506 * 106.84169 * 0.37658 * 21 20 19 23 23 O 1.34300 * 108.42236 * 359.76742 * 22 21 20 24 24 C 1.34670 * 108.02237 * 359.72151 * 4 3 2 25 25 N 1.35046 * 125.65115 * 179.82620 * 2 1 3 26 26 C 1.46499 * 126.39639 * 359.97025 * 25 2 1 27 27 H 1.08995 * 109.47668 * 270.17785 * 1 2 3 28 28 H 1.09004 * 109.47077 * 30.17905 * 1 2 3 29 29 H 1.09000 * 109.47155 * 150.17549 * 1 2 3 30 30 H 1.08997 * 109.47195 * 214.99794 * 9 8 5 31 31 H 1.09000 * 109.47164 * 334.99829 * 9 8 5 32 32 H 0.97001 * 119.99882 * 180.02562 * 13 12 10 33 33 H 1.08997 * 109.46985 * 215.00739 * 18 8 5 34 34 H 1.09003 * 109.46804 * 334.99842 * 18 8 5 35 35 H 1.08000 * 126.57536 * 0.03527 * 20 19 18 36 36 H 1.08004 * 126.57320 * 180.16705 * 21 20 19 37 37 H 1.08005 * 125.78874 * 179.75401 * 22 21 20 38 38 H 1.07997 * 126.59514 * 179.97438 * 24 4 3 39 39 H 1.09002 * 109.47391 * 269.71816 * 26 25 2 40 40 H 1.09001 * 109.46813 * 149.71873 * 26 25 2 41 41 H 1.09004 * 109.47041 * 29.72000 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6819 -0.0065 5 16 4.9500 1.7573 -0.0159 6 8 5.1816 2.1260 1.3367 7 8 5.9326 1.1325 -0.8304 8 7 4.4978 3.1403 -0.8066 9 6 4.6790 3.2478 -2.2564 10 6 3.3996 2.8606 -2.9525 11 1 2.5378 2.5646 -2.3730 12 6 3.3296 2.8844 -4.3293 13 7 2.2130 2.5470 -4.9368 14 14 4.8201 3.3971 -5.3317 15 1 5.6432 2.2006 -5.6422 16 1 4.3714 4.0310 -6.5973 17 1 5.6309 4.3670 -4.5526 18 6 3.9167 4.2564 -0.0564 19 6 5.0002 5.2422 0.2975 20 6 5.3888 6.2876 -0.4545 21 6 6.4230 6.9404 0.2549 22 6 6.6102 6.2500 1.3940 23 8 5.7456 5.2225 1.4145 24 6 3.5926 -0.6643 -0.0045 25 7 2.2941 -1.0974 0.0033 26 6 1.8425 -2.4910 0.0082 27 1 -0.3634 0.0032 1.0276 28 1 -0.3633 0.8884 -0.5166 29 1 -0.3633 -0.8916 -0.5111 30 1 4.9370 4.2746 -2.5152 31 1 5.4810 2.5808 -2.5728 32 1 2.1639 2.5634 -5.9054 33 1 3.1612 4.7505 -0.6672 34 1 3.4559 3.8795 0.8568 35 1 4.9863 6.5746 -1.4147 36 1 6.9619 7.8221 -0.0594 37 1 7.3333 6.4825 2.1619 38 1 4.4776 -1.2832 -0.0087 39 1 1.7357 -2.8348 1.0370 40 1 2.5746 -3.1119 -0.5083 41 1 0.8812 -2.5632 -0.5007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103267312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:34 Heat of formation + Delta-G solvation = 16.105699 kcal Electronic energy + Delta-G solvation = -28241.789833 eV Core-core repulsion = 24252.498219 eV Total energy + Delta-G solvation = -3989.291614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.09952 -41.94241 -36.57902 -35.94842 -35.24533 -34.03064 -32.61898 -32.38320 -31.73402 -30.12183 -27.65666 -27.42042 -26.77133 -24.89504 -22.25486 -21.69941 -21.21437 -20.17079 -19.98019 -18.37679 -17.66216 -16.89161 -16.78689 -16.50264 -15.97059 -15.72417 -15.54629 -15.18693 -14.35562 -14.20207 -14.03018 -13.68772 -13.61668 -13.38981 -12.79005 -12.75386 -12.54078 -12.43468 -12.41594 -12.30667 -12.27849 -11.93260 -11.68067 -11.50295 -11.34761 -11.17769 -11.05260 -10.61595 -10.45482 -10.18081 -9.82636 -9.65664 -9.51686 -9.43607 -8.56133 -8.44654 -8.21282 -8.07435 -6.05957 -4.04531 1.08138 1.91989 2.13175 2.76862 2.95338 3.02762 3.31860 3.38245 3.42578 3.44620 3.59056 4.32584 4.43286 4.59843 4.64942 4.77259 4.91042 5.09583 5.13339 5.17911 5.27134 5.33856 5.34646 5.42048 5.55526 5.59179 5.67460 5.95200 6.11002 6.17187 6.19905 6.23534 6.39532 6.51219 6.54164 6.88511 6.91959 7.12414 7.22129 7.37871 7.60062 7.62883 8.08039 8.52558 9.07418 9.55395 11.06722 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009064 B = 0.005907 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.459189 B = 4739.029444 C = 6656.298508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.206 3.794 3 N -0.399 5.399 4 C -0.530 4.530 5 S 2.723 3.277 6 O -0.963 6.963 7 O -0.960 6.960 8 N -0.960 5.960 9 C 0.213 3.787 10 C -0.535 4.535 11 H 0.092 0.908 12 C 0.076 3.924 13 N -0.897 5.897 14 Si 0.863 3.137 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.262 1.262 18 C 0.214 3.786 19 C -0.021 4.021 20 C -0.199 4.199 21 C -0.219 4.219 22 C -0.052 4.052 23 O -0.163 6.163 24 C 0.049 3.951 25 N -0.456 5.456 26 C 0.068 3.932 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.262 0.738 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.197 0.803 38 H 0.186 0.814 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 -4.127 11.606 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.059 4.059 3 N -0.117 5.117 4 C -0.742 4.742 5 S 2.809 3.191 6 O -0.953 6.953 7 O -0.950 6.950 8 N -0.797 5.797 9 C 0.089 3.911 10 C -0.574 4.574 11 H 0.110 0.890 12 C -0.127 4.127 13 N -0.535 5.535 14 Si 0.690 3.310 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.186 1.186 18 C 0.088 3.912 19 C -0.074 4.074 20 C -0.220 4.220 21 C -0.238 4.238 22 C -0.120 4.120 23 O -0.058 6.058 24 C -0.090 4.090 25 N -0.137 5.137 26 C -0.074 4.074 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.213 0.787 38 H 0.203 0.797 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.023 -3.911 11.997 12.619 hybrid contribution 0.468 -0.781 -1.247 1.544 sum 0.445 -4.692 10.750 11.738 Atomic orbital electron populations 1.20187 0.84515 1.04531 1.03141 1.23563 0.95933 0.81224 1.05193 1.70262 0.98841 1.27339 1.15247 1.33457 1.12749 1.06979 1.20972 1.01131 0.72698 0.72482 0.72791 1.93571 1.84377 1.82359 1.34969 1.93549 1.55492 1.76514 1.69485 1.57005 1.78027 1.26436 1.18270 1.19686 0.98263 0.98747 0.74360 1.21590 0.98319 1.45623 0.91890 0.88982 1.24822 0.95545 0.94690 0.97623 1.69897 1.25937 1.48525 1.09166 0.87046 0.83917 0.79785 0.80285 1.19927 1.21143 1.18611 1.19478 0.89673 0.85467 0.96617 1.23360 0.98071 0.99727 0.86201 1.21687 1.00594 0.97784 1.01906 1.21795 1.02229 1.03367 0.96448 1.23983 0.97208 0.89749 1.01095 1.84148 1.39702 1.43170 1.38768 1.22371 0.87716 0.94901 1.04045 1.45468 1.06364 1.07991 1.53894 1.22123 1.02484 0.79214 1.03626 0.90319 0.88449 0.90983 0.94049 0.93821 0.92767 0.86264 0.88990 0.83294 0.83931 0.78675 0.79717 0.90271 0.89308 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.19 36.00 0.37 -0.40 16 2 C 0.21 3.39 7.90 -155.41 -1.23 2.17 16 3 N -0.40 -8.02 11.25 -10.02 -0.11 -8.13 16 4 C -0.53 -10.66 7.08 -17.81 -0.13 -10.79 16 5 S 2.72 58.04 5.78 -107.50 -0.62 57.42 16 6 O -0.96 -20.95 16.99 -57.17 -0.97 -21.92 16 7 O -0.96 -22.17 16.50 -57.17 -0.94 -23.12 16 8 N -0.96 -20.72 2.75 -116.95 -0.32 -21.04 16 9 C 0.21 5.12 4.50 -5.19 -0.02 5.10 16 10 C -0.54 -14.60 9.94 -34.44 -0.34 -14.95 16 11 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 12 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 13 N -0.90 -26.70 13.96 55.43 0.77 -25.93 16 14 Si 0.86 21.19 27.47 -169.99 -4.67 16.52 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 18 C 0.21 4.04 5.87 -5.19 -0.03 4.01 16 19 C -0.02 -0.39 6.90 -35.63 -0.25 -0.63 16 20 C -0.20 -3.39 10.81 -39.70 -0.43 -3.82 16 21 C -0.22 -3.24 10.91 -39.70 -0.43 -3.67 16 22 C -0.05 -0.76 12.09 29.41 0.36 -0.40 16 23 O -0.16 -2.98 10.65 5.72 0.06 -2.92 16 24 C 0.05 0.83 11.44 -16.56 -0.19 0.64 16 25 N -0.46 -6.59 3.15 -121.28 -0.38 -6.97 16 26 C 0.07 0.57 10.98 59.85 0.66 1.23 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.07 0.66 7.06 -51.93 -0.37 0.29 16 30 H 0.04 0.96 7.17 -51.93 -0.37 0.59 16 31 H 0.04 1.10 6.34 -51.93 -0.33 0.77 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.12 2.13 8.11 -51.93 -0.42 1.71 16 34 H 0.09 1.63 7.61 -51.93 -0.40 1.24 16 35 H 0.15 2.41 8.06 -52.49 -0.42 1.99 16 36 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.20 1.98 8.06 -52.48 -0.42 1.56 16 38 H 0.19 2.45 8.06 -52.49 -0.42 2.02 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.62 7.04 -51.93 -0.37 0.25 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -37.60 367.82 -8.63 -46.23 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.22 Total: 3.80 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -1.77 Total: -19.49 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -0.04 Total: -62.07 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -1.85 Total: -47.95 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: 58.04 SS G_CDS: -0.62 Total: 57.42 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.60 -8.63 -46.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103267312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.339 kcal (2) G-P(sol) polarization free energy of solvation -37.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds