Wall clock time and date at job start Tue Mar 31 2020 22:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47366 * 2 1 4 4 N 1.46498 * 109.46867 * 180.02562 * 3 2 1 5 5 C 1.37102 * 120.00019 * 266.94818 * 4 3 2 6 6 H 1.07997 * 119.99661 * 146.01828 * 5 4 3 7 7 C 1.38950 * 119.99950 * 326.02206 * 5 4 3 8 8 N 1.31408 * 120.00118 * 337.18071 * 7 5 4 9 9 Si 1.86798 * 119.99834 * 157.17938 * 7 5 4 10 10 H 1.48510 * 109.46985 * 94.97287 * 9 7 5 11 11 H 1.48504 * 109.47199 * 214.96850 * 9 7 5 12 12 H 1.48497 * 109.47299 * 334.97160 * 9 7 5 13 13 C 1.34777 * 120.00022 * 86.95098 * 4 3 2 14 14 O 1.21288 * 119.99838 * 179.97438 * 13 4 3 15 15 C 1.50697 * 119.99971 * 0.02562 * 13 4 3 16 16 H 1.09000 * 109.59392 * 315.41108 * 15 13 4 17 17 N 1.46090 * 109.59761 * 195.10553 * 15 13 4 18 18 C 1.39219 * 123.35561 * 290.17504 * 17 15 13 19 19 C 1.39422 * 118.82570 * 158.28619 * 18 17 15 20 20 C 1.37902 * 120.22182 * 179.16461 * 19 18 17 21 21 C 1.38308 * 120.28141 * 359.94246 * 20 19 18 22 22 C 1.38321 * 119.84935 * 0.37467 * 21 20 19 23 23 C 1.37921 * 120.02174 * 0.02562 * 22 21 20 24 24 S 1.76754 * 119.86453 * 178.53757 * 23 22 21 25 25 O 1.42096 * 106.78647 * 283.10126 * 24 23 22 26 26 O 1.42100 * 106.78191 * 56.97398 * 24 23 22 27 27 N 1.47691 * 109.60128 * 75.72599 * 15 13 4 28 28 H 1.09004 * 109.47060 * 59.99966 * 1 2 3 29 29 H 1.08999 * 109.47327 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47121 * 300.00242 * 1 2 3 31 31 H 1.09006 * 109.46615 * 120.00314 * 2 1 3 32 32 H 1.09000 * 109.47121 * 239.99757 * 2 1 3 33 33 H 1.08994 * 109.47142 * 299.99996 * 3 2 1 34 34 H 1.09004 * 109.47034 * 60.00298 * 3 2 1 35 35 H 0.97004 * 120.00145 * 180.02562 * 8 7 5 36 36 H 0.97001 * 118.31579 * 110.19497 * 17 15 13 37 37 H 1.08001 * 119.88867 * 359.14141 * 19 18 17 38 38 H 1.07994 * 119.85735 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.07443 * 180.35441 * 21 20 19 40 40 H 1.07994 * 119.98910 * 180.02562 * 22 21 20 41 41 H 0.96998 * 122.06494 * 241.43227 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1911 1.5053 1.1848 6 1 5.1327 0.9874 1.2918 7 6 3.6748 2.2354 2.2483 8 7 2.8131 3.2020 2.0249 9 14 4.2055 1.8426 3.9957 10 1 5.3250 2.7370 4.3859 11 1 3.0612 2.0503 4.9192 12 1 4.6523 0.4285 4.0713 13 6 4.1785 1.3804 -1.1665 14 8 5.3914 1.3807 -1.1670 15 6 3.4244 1.3118 -2.4694 16 1 2.6080 0.5949 -2.3820 17 7 4.3295 0.8957 -3.5380 18 6 5.3520 1.7011 -4.0321 19 6 6.4224 1.0992 -4.6923 20 6 7.4422 1.8708 -5.2082 21 6 7.4107 3.2472 -5.0760 22 6 6.3556 3.8515 -4.4166 23 6 5.3380 3.0822 -3.8922 24 16 4.0115 3.8556 -3.0168 25 8 4.5092 4.1887 -1.7282 26 8 3.4326 4.8036 -3.9031 27 7 2.8801 2.6449 -2.7976 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 2.4530 3.7120 2.7674 36 1 4.2118 0.0133 -3.9231 37 1 6.4531 0.0250 -4.7996 38 1 8.2687 1.3984 -5.7181 39 1 8.2083 3.8487 -5.4863 40 1 6.3285 4.9261 -4.3124 41 1 1.9273 2.8054 -2.8827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104043090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:15 Heat of formation + Delta-G solvation = -44.551065 kcal Electronic energy + Delta-G solvation = -29208.361216 eV Core-core repulsion = 25216.439327 eV Total energy + Delta-G solvation = -3991.921888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.82716 -38.60956 -36.61353 -36.15335 -35.29805 -35.15111 -32.95464 -32.69965 -31.17966 -31.01805 -29.25022 -26.43871 -25.59003 -24.08449 -23.05392 -21.98010 -21.05598 -19.68618 -18.81995 -18.05000 -17.78282 -16.93370 -16.54872 -16.08903 -15.94277 -15.40026 -14.97387 -14.78759 -14.48267 -14.17469 -13.94380 -13.82012 -13.52367 -13.40238 -13.13577 -12.76056 -12.36846 -12.22009 -11.70404 -11.60717 -11.59136 -11.50974 -11.42569 -11.35339 -11.16249 -10.97912 -10.72738 -10.50851 -10.42933 -10.30355 -10.27885 -10.03505 -9.86183 -9.11135 -8.95969 -8.52119 -7.53789 -7.48202 -6.31584 -3.91666 0.82997 1.20123 1.65094 2.88502 3.16515 3.25844 3.27774 3.33927 3.76564 3.88228 3.95682 4.15768 4.63019 4.85246 4.93630 5.03744 5.08775 5.25361 5.38930 5.40835 5.44448 5.50405 5.60661 5.64073 5.74136 5.91894 5.96568 6.07248 6.09839 6.23227 6.33356 6.34954 6.48164 6.58193 6.79207 6.81616 6.99492 7.21259 7.28754 7.57538 7.61495 8.19209 8.45925 9.14380 9.35739 9.90695 10.71247 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.004877 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.799071 B = 5739.380030 C = 6071.400334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.089 3.911 4 N -0.412 5.412 5 C -0.305 4.305 6 H 0.094 0.906 7 C 0.040 3.960 8 N -0.855 5.855 9 Si 0.917 3.083 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.419 3.581 14 O -0.552 6.552 15 C 0.357 3.643 16 H 0.125 0.875 17 N -0.735 5.735 18 C 0.319 3.681 19 C -0.197 4.197 20 C -0.036 4.036 21 C -0.189 4.189 22 C 0.012 3.988 23 C -0.706 4.706 24 S 2.677 3.323 25 O -0.911 6.911 26 O -0.971 6.971 27 N -1.106 6.106 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.120 0.880 35 H 0.268 0.732 36 H 0.409 0.591 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.276 -5.444 -12.000 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.035 4.035 4 N -0.130 5.130 5 C -0.433 4.433 6 H 0.112 0.888 7 C -0.166 4.166 8 N -0.492 5.492 9 Si 0.743 3.257 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.202 3.798 14 O -0.433 6.433 15 C 0.160 3.840 16 H 0.143 0.857 17 N -0.367 5.367 18 C 0.213 3.787 19 C -0.219 4.219 20 C -0.055 4.055 21 C -0.210 4.210 22 C -0.008 4.008 23 C -0.799 4.799 24 S 2.767 3.233 25 O -0.900 6.900 26 O -0.961 6.961 27 N -0.871 5.871 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.137 0.863 35 H 0.078 0.922 36 H 0.245 0.755 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.800 -4.334 -11.391 12.320 hybrid contribution -0.016 -0.990 0.359 1.054 sum -1.816 -5.324 -11.032 12.383 Atomic orbital electron populations 1.21690 0.96120 1.00818 1.01751 1.22009 0.95074 0.99159 1.01738 1.21857 0.82179 0.94606 1.04858 1.43370 1.04466 1.60999 1.04200 1.19421 1.07070 1.29952 0.86870 0.88821 1.25338 0.97250 0.93536 1.00457 1.69943 1.30694 1.16381 1.32221 0.86088 0.78322 0.79212 0.82100 1.20302 1.20760 1.19341 1.20498 0.88622 0.85849 0.84850 1.90605 1.13043 1.53710 1.85906 1.20835 0.91091 0.85694 0.86391 0.85706 1.44654 1.32842 1.19204 1.39955 1.16868 0.86292 0.88246 0.87278 1.20838 0.94814 0.99741 1.06517 1.21010 0.96288 0.93834 0.94346 1.20926 0.99856 0.94999 1.05191 1.20350 0.90908 0.98638 0.90859 1.29763 1.22404 1.02593 1.25121 1.02630 0.73816 0.72332 0.74514 1.93791 1.78881 1.80299 1.37053 1.93568 1.77285 1.58183 1.67074 1.55918 1.20509 1.22759 1.87904 0.93155 0.93331 0.92512 0.91245 0.93560 0.93132 0.86289 0.92175 0.75532 0.85610 0.85721 0.85609 0.85571 0.73937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.14 -2.27 6.10 -26.73 -0.16 -2.43 16 3 C 0.09 1.81 4.63 -4.04 -0.02 1.79 16 4 N -0.41 -10.03 2.55 -114.82 -0.29 -10.32 16 5 C -0.31 -8.37 8.97 -14.93 -0.13 -8.50 16 6 H 0.09 2.70 7.71 -52.49 -0.40 2.29 16 7 C 0.04 1.04 4.93 -17.47 -0.09 0.96 16 8 N -0.86 -23.06 11.34 55.50 0.63 -22.43 16 9 Si 0.92 20.53 29.61 -169.99 -5.03 15.50 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.42 9.78 5.53 -10.99 -0.06 9.72 16 14 O -0.55 -14.99 15.38 5.55 0.09 -14.90 16 15 C 0.36 6.10 3.26 -127.93 -0.42 5.69 16 16 H 0.13 1.67 6.08 -51.93 -0.32 1.35 16 17 N -0.74 -11.17 5.04 -56.10 -0.28 -11.45 16 18 C 0.32 5.45 5.47 -83.85 -0.46 4.99 16 19 C -0.20 -2.84 9.83 -39.26 -0.39 -3.23 16 20 C -0.04 -0.47 10.02 -39.68 -0.40 -0.87 16 21 C -0.19 -2.65 10.06 -39.53 -0.40 -3.05 16 22 C 0.01 0.21 9.74 -39.67 -0.39 -0.18 16 23 C -0.71 -13.26 5.86 -39.48 -0.23 -13.49 16 24 S 2.68 54.09 5.53 -107.50 -0.59 53.50 16 25 O -0.91 -23.28 16.77 -57.21 -0.96 -24.24 16 26 O -0.97 -19.86 18.05 -57.11 -1.03 -20.89 16 27 N -1.11 -18.59 5.34 -8.04 -0.04 -18.63 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.66 6.79 -51.93 -0.35 0.31 16 33 H 0.05 0.90 5.83 -51.93 -0.30 0.60 16 34 H 0.12 2.73 5.34 -51.93 -0.28 2.45 16 35 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.41 4.57 8.79 -40.82 -0.36 4.21 16 37 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 41 H 0.42 5.60 8.60 -37.94 -0.33 5.28 16 LS Contribution 347.49 15.07 5.24 5.24 Total: -1.00 -37.50 347.49 -9.91 -47.40 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -4.86 Total: 11.34 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.77 Total: -10.11 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.01 Total: -62.84 kcal Atomic # 8 Polarization: -58.13 SS G_CDS: -1.90 Total: -60.03 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Atomic # 16 Polarization: 54.09 SS G_CDS: -0.59 Total: 53.50 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.50 -9.91 -47.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104043090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.854 kcal (2) G-P(sol) polarization free energy of solvation -37.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds