Wall clock time and date at job start Tue Mar 31 2020 22:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47366 * 2 1 4 4 N 1.46498 * 109.46867 * 180.02562 * 3 2 1 5 5 C 1.37102 * 120.00019 * 266.94818 * 4 3 2 6 6 H 1.07997 * 119.99661 * 146.01828 * 5 4 3 7 7 C 1.38950 * 119.99950 * 326.02206 * 5 4 3 8 8 N 1.31408 * 120.00118 * 337.18071 * 7 5 4 9 9 Si 1.86798 * 119.99834 * 157.17938 * 7 5 4 10 10 H 1.48510 * 109.46985 * 94.97287 * 9 7 5 11 11 H 1.48504 * 109.47199 * 214.96850 * 9 7 5 12 12 H 1.48497 * 109.47299 * 334.97160 * 9 7 5 13 13 C 1.34777 * 120.00022 * 86.95098 * 4 3 2 14 14 O 1.21288 * 119.99838 * 179.97438 * 13 4 3 15 15 C 1.50697 * 119.99971 * 0.02562 * 13 4 3 16 16 H 1.09000 * 109.59392 * 315.41108 * 15 13 4 17 17 N 1.46090 * 109.59761 * 195.10553 * 15 13 4 18 18 C 1.39219 * 123.35561 * 290.17504 * 17 15 13 19 19 C 1.39422 * 118.82570 * 158.28619 * 18 17 15 20 20 C 1.37902 * 120.22182 * 179.16461 * 19 18 17 21 21 C 1.38308 * 120.28141 * 359.94246 * 20 19 18 22 22 C 1.38321 * 119.84935 * 0.37467 * 21 20 19 23 23 C 1.37921 * 120.02174 * 0.02562 * 22 21 20 24 24 S 1.76754 * 119.86453 * 178.53757 * 23 22 21 25 25 O 1.42096 * 106.78647 * 283.10126 * 24 23 22 26 26 O 1.42100 * 106.78191 * 56.97398 * 24 23 22 27 27 N 1.47691 * 109.60128 * 75.72599 * 15 13 4 28 28 H 1.09004 * 109.47060 * 59.99966 * 1 2 3 29 29 H 1.08999 * 109.47327 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47121 * 300.00242 * 1 2 3 31 31 H 1.09006 * 109.46615 * 120.00314 * 2 1 3 32 32 H 1.09000 * 109.47121 * 239.99757 * 2 1 3 33 33 H 1.08994 * 109.47142 * 299.99996 * 3 2 1 34 34 H 1.09004 * 109.47034 * 60.00298 * 3 2 1 35 35 H 0.97004 * 120.00145 * 180.02562 * 8 7 5 36 36 H 0.97001 * 118.31579 * 110.19497 * 17 15 13 37 37 H 1.08001 * 119.88867 * 359.14141 * 19 18 17 38 38 H 1.07994 * 119.85735 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.07443 * 180.35441 * 21 20 19 40 40 H 1.07994 * 119.98910 * 180.02562 * 22 21 20 41 41 H 0.96998 * 122.06494 * 241.43227 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1911 1.5053 1.1848 6 1 5.1327 0.9874 1.2918 7 6 3.6748 2.2354 2.2483 8 7 2.8131 3.2020 2.0249 9 14 4.2055 1.8426 3.9957 10 1 5.3250 2.7370 4.3859 11 1 3.0612 2.0503 4.9192 12 1 4.6523 0.4285 4.0713 13 6 4.1785 1.3804 -1.1665 14 8 5.3914 1.3807 -1.1670 15 6 3.4244 1.3118 -2.4694 16 1 2.6080 0.5949 -2.3820 17 7 4.3295 0.8957 -3.5380 18 6 5.3520 1.7011 -4.0321 19 6 6.4224 1.0992 -4.6923 20 6 7.4422 1.8708 -5.2082 21 6 7.4107 3.2472 -5.0760 22 6 6.3556 3.8515 -4.4166 23 6 5.3380 3.0822 -3.8922 24 16 4.0115 3.8556 -3.0168 25 8 4.5092 4.1887 -1.7282 26 8 3.4326 4.8036 -3.9031 27 7 2.8801 2.6449 -2.7976 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 2.4530 3.7120 2.7674 36 1 4.2118 0.0133 -3.9231 37 1 6.4531 0.0250 -4.7996 38 1 8.2687 1.3984 -5.7181 39 1 8.2083 3.8487 -5.4863 40 1 6.3285 4.9261 -4.3124 41 1 1.9273 2.8054 -2.8827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104043090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:14 Heat of formation + Delta-G solvation = -75.328415 kcal Electronic energy + Delta-G solvation = -29209.695822 eV Core-core repulsion = 25216.439327 eV Total energy + Delta-G solvation = -3993.256494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.28097 -40.03537 -38.27012 -37.61541 -37.01668 -36.86026 -34.55086 -34.08423 -32.92338 -32.19364 -30.51709 -28.13419 -27.02171 -25.71615 -24.28012 -23.29844 -22.40664 -21.30959 -20.35622 -19.39185 -19.21888 -18.79019 -17.98795 -17.61171 -17.42313 -17.07085 -16.54419 -16.38629 -15.85920 -15.49452 -15.37042 -15.27759 -15.06115 -14.86935 -14.51702 -14.03346 -13.92598 -13.44791 -13.40428 -13.29686 -13.19184 -13.16852 -12.95505 -12.84208 -12.60168 -12.49027 -12.18842 -12.10229 -11.94777 -11.86700 -11.72986 -11.48934 -11.22623 -10.87027 -10.33605 -10.21659 -9.39671 -8.78534 -8.29674 -5.98139 -0.69437 -0.01080 0.47534 1.30254 1.39921 1.49296 1.53376 1.96730 2.13523 2.34513 2.42604 2.69150 2.94886 3.06138 3.62423 3.71032 3.75601 3.85602 4.04264 4.15924 4.24147 4.34775 4.38796 4.44272 4.52709 4.62407 4.77509 4.85001 4.96274 5.01010 5.18839 5.24314 5.36356 5.45432 5.47555 5.51654 5.64773 5.66567 5.84870 6.08631 6.22836 6.50301 6.58776 7.19445 7.48389 8.03654 8.70863 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.004877 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.799071 B = 5739.380030 C = 6071.400334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C 0.085 3.915 4 N -0.427 5.427 5 C -0.336 4.336 6 H 0.065 0.935 7 C 0.002 3.998 8 N -0.880 5.880 9 Si 0.977 3.023 10 H -0.286 1.286 11 H -0.265 1.265 12 H -0.263 1.263 13 C 0.408 3.592 14 O -0.600 6.600 15 C 0.368 3.632 16 H 0.173 0.827 17 N -0.724 5.724 18 C 0.295 3.705 19 C -0.199 4.199 20 C -0.030 4.030 21 C -0.184 4.184 22 C -0.021 4.021 23 C -0.732 4.732 24 S 2.680 3.320 25 O -0.981 6.981 26 O -0.985 6.985 27 N -1.094 6.094 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.272 0.728 36 H 0.430 0.570 37 H 0.158 0.842 38 H 0.170 0.830 39 H 0.160 0.840 40 H 0.130 0.870 41 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.599 -7.700 -14.080 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C -0.038 4.038 4 N -0.145 5.145 5 C -0.464 4.464 6 H 0.083 0.917 7 C -0.201 4.201 8 N -0.517 5.517 9 Si 0.800 3.200 10 H -0.212 1.212 11 H -0.189 1.189 12 H -0.187 1.187 13 C 0.192 3.808 14 O -0.484 6.484 15 C 0.170 3.830 16 H 0.190 0.810 17 N -0.359 5.359 18 C 0.190 3.810 19 C -0.221 4.221 20 C -0.049 4.049 21 C -0.204 4.204 22 C -0.041 4.041 23 C -0.828 4.828 24 S 2.774 3.226 25 O -0.970 6.970 26 O -0.975 6.975 27 N -0.863 5.863 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.270 0.730 37 H 0.176 0.824 38 H 0.188 0.812 39 H 0.178 0.822 40 H 0.148 0.852 41 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -2.209 -6.590 -13.477 15.164 hybrid contribution 0.222 -0.278 0.891 0.959 sum -1.988 -6.869 -12.586 14.475 Atomic orbital electron populations 1.21660 0.93263 1.02556 1.02278 1.21919 0.97396 0.95941 1.01878 1.22002 0.79962 0.97487 1.04362 1.43627 1.06014 1.61017 1.03888 1.19340 1.07020 1.30843 0.89216 0.91713 1.26065 0.97293 0.93047 1.03684 1.70033 1.31549 1.16875 1.33284 0.85201 0.78048 0.78908 0.77819 1.21232 1.18898 1.18694 1.21533 0.88561 0.83965 0.86713 1.90555 1.15427 1.55255 1.87144 1.20603 0.91804 0.86556 0.84013 0.81021 1.44493 1.32307 1.20072 1.38997 1.17212 0.87683 0.87898 0.88245 1.21322 0.93877 1.01628 1.05264 1.21609 0.96836 0.93452 0.92956 1.21407 0.99329 0.96116 1.03593 1.20707 0.91891 0.99235 0.92254 1.29485 1.22663 1.03854 1.26763 1.02005 0.74303 0.72810 0.73462 1.93720 1.80287 1.82129 1.40840 1.93530 1.77732 1.59552 1.66660 1.55573 1.21131 1.21978 1.87587 0.91056 0.90945 0.93658 0.93408 0.91170 0.91140 0.89210 0.91872 0.73008 0.82394 0.81233 0.82216 0.85212 0.71872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.91 71.98 0.71 -2.48 16 2 C -0.13 -4.06 6.10 30.60 0.19 -3.87 16 3 C 0.09 3.45 4.63 86.38 0.40 3.85 16 4 N -0.43 -21.34 2.55 -635.55 -1.62 -22.96 16 5 C -0.34 -19.26 8.97 84.04 0.75 -18.51 16 6 H 0.07 3.98 7.71 -2.91 -0.02 3.96 16 7 C 0.00 0.12 4.93 84.93 0.42 0.54 16 8 N -0.88 -49.13 11.34 21.66 0.25 -48.88 16 9 Si 0.98 43.39 29.61 68.60 2.03 45.42 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 13 C 0.41 19.31 5.53 87.66 0.48 19.80 16 14 O -0.60 -33.66 15.38 -3.06 -0.05 -33.71 16 15 C 0.37 12.05 3.26 128.52 0.42 12.47 16 16 H 0.17 3.97 6.08 -2.39 -0.01 3.96 16 17 N -0.72 -20.50 5.04 -331.41 -1.67 -22.17 16 18 C 0.30 9.66 5.47 38.39 0.21 9.87 16 19 C -0.20 -5.11 9.83 22.48 0.22 -4.89 16 20 C -0.03 -0.67 10.02 22.21 0.22 -0.45 16 21 C -0.18 -4.69 10.06 22.31 0.22 -4.46 16 22 C -0.02 -0.69 9.74 22.21 0.22 -0.48 16 23 C -0.73 -27.54 5.86 22.34 0.13 -27.41 16 24 S 2.68 111.68 5.53 -56.49 -0.31 111.37 16 25 O -0.98 -53.18 16.77 -127.96 -2.15 -55.33 16 26 O -0.98 -41.39 18.05 -128.06 -2.31 -43.70 16 27 N -1.09 -36.16 5.34 -179.35 -0.96 -37.11 16 28 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.07 1.79 6.79 -2.39 -0.02 1.77 16 33 H 0.07 2.46 5.83 -2.39 -0.01 2.45 16 34 H 0.09 4.22 5.34 -2.38 -0.01 4.21 16 35 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 36 H 0.43 8.15 8.79 -92.71 -0.82 7.34 16 37 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 40 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.44 11.08 8.60 -94.54 -0.81 10.27 16 Total: -1.00 -88.78 347.49 -2.72 -91.50 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.53 Total: 31.60 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 4.60 Total: -16.03 kcal Atomic # 7 Polarization: -127.12 SS G_CDS: -4.00 Total: -131.12 kcal Atomic # 8 Polarization: -128.24 SS G_CDS: -4.50 Total: -132.74 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 111.68 SS G_CDS: -0.31 Total: 111.37 kcal Total: -88.78 -2.72 -91.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104043090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.172 kcal (2) G-P(sol) polarization free energy of solvation -88.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds